mRNA_H-canaliculatus_F_contig1391.3108.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1391.3108.1
Unique NamemRNA_H-canaliculatus_F_contig1391.3108.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1391.3108.1 vs. uniprot
Match: D7G8P8_ECTSI (HYPK_UBA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P8_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 2.140e-32
Identity = 70/97 (72.16%), Postives = 81/97 (83.51%), Query Frame = 1 
Query:    1 MTDKEEATAGLEKVTDYHVEKELNEDDTANALSSLSTNSAKT---TSTEPSTEASLKISAADIEVLKDELEVSSEEAKTALLTGNGDLVQAFRKLLR 282
            M + EEA AGLEKVTDYH EKELNE+DTANALSSL+ NS+ T    S EPSTE++LKISAADIEVLK+ELEVS+EEAK ALL  +GD+VQA R LL+
Sbjct:    1 MAEAEEANAGLEKVTDYHAEKELNENDTANALSSLANNSSPTLIPASAEPSTESTLKISAADIEVLKEELEVSTEEAKAALLKRDGDVVQALRLLLQ 97
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1391.3108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8P8_ECTSI2.140e-3272.16HYPK_UBA domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1391contigH-canaliculatus_F_contig1391:19588..22162 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUBA-like
Ec32 orthologEc-22_002540.1
Exons2
Model size285
Cds size285
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929135.8669755-CDS-H-canaliculatus_F_contig1391:19587..197181622929135.8669755-CDS-H-canaliculatus_F_contig1391:19587..19718Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1391 19588..19718 +
1696845691.1759946-CDS-H-canaliculatus_F_contig1391:19587..197181696845691.1759946-CDS-H-canaliculatus_F_contig1391:19587..19718Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1391 19588..19718 +
1622929136.4268436-CDS-H-canaliculatus_F_contig1391:22008..221621622929136.4268436-CDS-H-canaliculatus_F_contig1391:22008..22162Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1391 22009..22162 +
1696845691.1861074-CDS-H-canaliculatus_F_contig1391:22008..221621696845691.1861074-CDS-H-canaliculatus_F_contig1391:22008..22162Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1391 22009..22162 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1391.3108.1prot_H-canaliculatus_F_contig1391.3108.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1391 19588..22162 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1391.3108.1

>prot_H-canaliculatus_F_contig1391.3108.1 ID=prot_H-canaliculatus_F_contig1391.3108.1|Name=mRNA_H-canaliculatus_F_contig1391.3108.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=95bp
MTDKEEATAGLEKVTDYHVEKELNEDDTANALSSLSTNSAKTTSTEPSTE
ASLKISAADIEVLKDELEVSSEEAKTALLTGNGDLVQAFRKLLR*
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mRNA from alignment at H-canaliculatus_F_contig1391:19588..22162+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1391.3108.1 ID=mRNA_H-canaliculatus_F_contig1391.3108.1|Name=mRNA_H-canaliculatus_F_contig1391.3108.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2575bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1391:19588..22162+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACCGACAAAGAAGAGGCTACTGCTGGCTTGGAGAAGGTGACTGATTA
TCACGTGGAGAAGGAACTCAACGAGGATGATACGGCGAACGCATTGTCGA
GCTTATCCACCAACTCCGCAAAGACAACAAGGTACTTTGTTATACACATC
GTGTCGTCTGCGTACCAAGAAAAAGGATGACCCTGAGACTACTCCGTAAA
ATATATGAAATTAAAGAGTTTCGGACGCGACGCGCCAGAGTGCTCAGGTT
CAGACCACGGTAGGTGGGATCCAGGTTGATCCACAGCGACCAGTTGTTGT
CGAAATAACACTGATCCGGAGAACGTAGTTTGAAGAAACGATACGTCCTG
CGTTTGACCATCTCAGCTTGCCGCAGGGAAAGGACAACCCTCACATGTAC
CGACGAGGAGCGTTGCGCACTAACATCAGGTTTTTCCAGCAACCCTTGCT
GCACTGGGATGGCACGTTCGTGTCGCTCGGATTTGGTGGGCTTTCTCCAA
GTTTGCGAAAAGGAGATAGTGTGTGCGATTGAAATACGTCTGTTTACAAG
TGTACAGACGAAATCCCTTCCGACGAAAGTTCCTACTGAGCGTGGGCCTT
CGCTTTGCTGGCGCAGTTACTCCAAACCCACACGTCGGCCACCAACGACT
CAACAGGAACGATTCCGGTTGACGTCTGACCTCGATCCGTGGAGTAAGGC
GGAAGAGAGAGGCATGTCGCGCTGTGTCTCTCGACCTTCAAGTCAGCTGA
CATGTTGGATGTAGAGGAATAGAAAAGACCTTGGACTCTTTCCAAATCGA
ATGTGTTTCCTCCTTGTTGCCCGAGCACCGCGCACAGACACATGCCAGGC
GCCTCAGCTGAAATCTGCCAATAACCCCTTCCCTCCCAGCACTGTCGCGA
AGGTCAGCACAATCTGGTGGTGTGTTTTGTTGCCTGCAACGGACTCTCAG
GTTATTATGATGATGACCCGAGAGTTCTGAGTTGGGCACGTGAGAGCTCA
GGGTCACGGATGCTTCTTGACCACTTTTCCCTGAGCGCTTCGTCCGCGAG
CGCTCTCAACTGTTCTAAAATCAAATATCGGTGGCTCTAAAAAGGAATTG
CCAGCTTTTCTAACCTTGAGCCCTTAGCACTTTCCCCGAGCACTTCGGAA
ACAAAAAGCTGCGTCCGAAACTTGCTACTGTACCCCGTTTTCATGTGAGG
CCGAAAGCAGGTATCCGTTTGTCTCTGAAATCGATCAGCGCCACCTCATT
GGCCAACGCAGGCCACCACCCGACATTGCCGGCATTTCCGCCGGGCAGCC
CCAATTGCGGCTATCCCACACACATTTACCCGAAAATGGCCATGGATTCG
CGGGCTCTTCGACCAACGGCGTACACGCGTCATCCAGGACTGAGACTCTC
AGCCAACAGCGACGGCTGCATCCGGCTACTGTAGTGTTGCCATGCACGCG
CACCAACCTCCGCTTGAACGGACGACCTCTTTTTGCGTTATCTCTCTTGC
CTCTTCAGAAGTTTTCTCTCTCCTACGCGAGAGCTAACACTAGACTCGAA
ATACCAATAGCAGCAGTCATGGATTTGTACTTTCCCTTCCGAGGGTCTAC
AAGTGTAGCTCGAGGTGAATCAGCACTTCCCTTGGCCAAGAAGTTGCCGG
CGGTACCTTTGGGCAACGACTTCTCCCGCCGGTAGGTGTTTGTTATCACT
CACGGTGTATCACAGTGGCTGCGCTTCTTGTTGCGAATGTCTTGTCGGCC
CTCGCAGACGGCAGAAAGAGACATGTATGGAGGGAAGAGGGAGAACGAAA
AAAAGGCCATCCGTTCAAGCGGAGGTTGGTGCGCGTGCATGCGAACACTA
GCCGGATCCAGCCGTCGCTGTTGGTGGCTGAGAGTCTCAGTCCTGGCTGA
CTTATGTACGCCATTCGTCAAAGAACCCGTATATCCATGACCACGTTTGG
GTAATTTCGGGTATGGGTGTGTGGAAAATGAGCGCCCTCCGAGCGATGAA
CAGCCGCAATCGGGTTTACCCGGCAGAAATGCCGGCAATGTCGGATGGCG
GCCTGCGCTGCCAACGGTATGACGCGAATCGACTTCAAGGCCTAGAGATA
CCCGTTTCAGGCCAAACATGGACATGGAGTATACCCATTTTTGGCAACTG
GTCTTTCCAAATAGTAATTTTGCCAAAGGCTCTTCGTAGCTTAGTGTGGA
AGACTCCTGTTCGTACGATCCTTCGTCCTTAGTGACATCGAAAGGGTTGG
AGAATTCAACAAACTGCCGGAATGTTTTCGCGAGGCTCAGGAGGTCCTGA
AGCCTCTCAGGCCCTCCCGTCCCATTCTTCTGGCGAATTAGAACTGACAG
TCGCCCTCCTCCCATCGTCCTACGCTTCCACGTTTATCTATGGATCATTT
GGCGTTGCGCACATGGCAAAGCACGGAGCCAAGCACGGAAGCAAGTCTTA
AGATATCGGCGGCAGATATTGAAGTTTTGAAGGACGAGCTGGAAGTTTCA
AGTGAAGAGGCGAAAACTGCGTTGTTGACAGGGAATGGTGATCTTGTGCA
AGCTTTCAGAAAACTATTGCGATAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1391:19588..22162+

>mRNA_H-canaliculatus_F_contig1391.3108.1 ID=mRNA_H-canaliculatus_F_contig1391.3108.1|Name=mRNA_H-canaliculatus_F_contig1391.3108.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=570bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1391:19588..22162+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACCGACAAAGAAGAGGCTACTGCTGGCTTGGAGAAGGTGACTGATTA
TCACGTGGAGAAGGAACTCAACGAGGATGATACGGCGAACGCATTGTCGA
GCTTATCCACCAACTCCGCAAAGACAACAAGATGACCGACAAAGAAGAGG
CTACTGCTGGCTTGGAGAAGGTGACTGATTATCACGTGGAGAAGGAACTC
AACGAGGATGATACGGCGAACGCATTGTCGAGCTTATCCACCAACTCCGC
AAAGACAACAAGCACGGAGCCAAGCACGGAAGCAAGTCTTAAGATATCGG
CGGCAGATATTGAAGTTTTGAAGGACGAGCTGGAAGTTTCAAGTGAAGAG
GCGAAAACTGCGTTGTTGACAGGGAATGGTGATCTTGTGCAAGCTTTCAG
AAAACTATTGCGATAACACGGAGCCAAGCACGGAAGCAAGTCTTAAGATA
TCGGCGGCAGATATTGAAGTTTTGAAGGACGAGCTGGAAGTTTCAAGTGA
AGAGGCGAAAACTGCGTTGTTGACAGGGAATGGTGATCTTGTGCAAGCTT
TCAGAAAACTATTGCGATAA
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