mRNA_H-canaliculatus_F_contig139.3097.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig139.3097.1
Unique NamemRNA_H-canaliculatus_F_contig139.3097.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig139.3097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig139contigH-canaliculatus_F_contig139:57500..57944 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size445
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig139.3097.1prot_H-canaliculatus_F_contig139.3097.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig139 57539..57847 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929133.3929322-UTR-H-canaliculatus_F_contig139:57499..575381622929133.3929322-UTR-H-canaliculatus_F_contig139:57499..57538Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig139 57500..57538 +
1696845689.96814-UTR-H-canaliculatus_F_contig139:57499..575381696845689.96814-UTR-H-canaliculatus_F_contig139:57499..57538Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig139 57500..57538 +
1622929133.4266806-UTR-H-canaliculatus_F_contig139:57847..579441622929133.4266806-UTR-H-canaliculatus_F_contig139:57847..57944Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig139 57848..57944 +
1696845689.984834-UTR-H-canaliculatus_F_contig139:57847..579441696845689.984834-UTR-H-canaliculatus_F_contig139:57847..57944Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig139 57848..57944 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929133.4100056-CDS-H-canaliculatus_F_contig139:57538..578471622929133.4100056-CDS-H-canaliculatus_F_contig139:57538..57847Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig139 57539..57847 +
1696845689.976365-CDS-H-canaliculatus_F_contig139:57538..578471696845689.976365-CDS-H-canaliculatus_F_contig139:57538..57847Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig139 57539..57847 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig139.3097.1

>prot_H-canaliculatus_F_contig139.3097.1 ID=prot_H-canaliculatus_F_contig139.3097.1|Name=mRNA_H-canaliculatus_F_contig139.3097.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=103bp
MSDIEELDASKDSHVFVDSQPWRSTRPSGSSLSTRVQDFDKAFLRHFVLG
RQRIPREIHAVRHSARIFLLSFGRRVSRRRGVLVQAWLRVTVMGLWRWRC
PS*
back to top

mRNA from alignment at H-canaliculatus_F_contig139:57500..57944+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig139.3097.1 ID=mRNA_H-canaliculatus_F_contig139.3097.1|Name=mRNA_H-canaliculatus_F_contig139.3097.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=445bp|location=Sequence derived from alignment at H-canaliculatus_F_contig139:57500..57944+ (Hapterophycus canaliculatus Oshoro5f female)
AGCGTGCTTGATTGCCATCCGTGTGCCCTCCCGCGAAAAATGTCTGATAT
CGAAGAACTCGACGCCAGCAAGGACTCGCATGTGTTTGTGGATTCCCAAC
CATGGAGGTCGACGAGGCCGTCCGGATCAAGTCTATCAACACGAGTCCAG
GATTTTGATAAAGCTTTCTTGCGGCACTTTGTATTGGGTCGGCAGCGGAT
TCCCAGGGAAATTCATGCAGTGAGACATTCTGCGAGGATCTTTCTCCTTT
CATTCGGTCGGAGGGTTTCCCGGAGGAGAGGCGTCCTCGTGCAAGCGTGG
TTGCGGGTAACGGTTATGGGGTTGTGGAGGTGGCGATGTCCTAGTTAGAT
GATGCCAACTGTTGTGCCGCTGCCTTCGAAAAGCTCGAAGCGGGTGGTCT
TGGTTTGGGACAGGGAGATGAAAACCATCAGCCTCTTCGTTCATC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig139:57500..57944+

>mRNA_H-canaliculatus_F_contig139.3097.1 ID=mRNA_H-canaliculatus_F_contig139.3097.1|Name=mRNA_H-canaliculatus_F_contig139.3097.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=618bp|location=Sequence derived from alignment at H-canaliculatus_F_contig139:57500..57944+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCTGATATCGAAGAACTCGACGCCAGCAAGGACTCGCATGTGTTTGT
GGATTCCCAACCATGGAGGTCGACGAGGCCGTCCGGATCAAGTCTATCAA
CACGAGTCCAGGATTTTGATAAAGCTTTCTTGCGGCACTTTGTATTGGGT
CGGCAGCGGATTCCCAGGGAAATTCATGCAGTGAGACATTCTGCGAGGAT
CTTTCTCCTTTCATTCGGTCGGAGGGTTTCCCGGAGGAGAGGCGTCCTCG
TGCAAGCGTGGTTGCGGGTAACGGTTATGGGGTTGTGGAGGTGGCGATGT
CCTAGTTAGATGTCTGATATCGAAGAACTCGACGCCAGCAAGGACTCGCA
TGTGTTTGTGGATTCCCAACCATGGAGGTCGACGAGGCCGTCCGGATCAA
GTCTATCAACACGAGTCCAGGATTTTGATAAAGCTTTCTTGCGGCACTTT
GTATTGGGTCGGCAGCGGATTCCCAGGGAAATTCATGCAGTGAGACATTC
TGCGAGGATCTTTCTCCTTTCATTCGGTCGGAGGGTTTCCCGGAGGAGAG
GCGTCCTCGTGCAAGCGTGGTTGCGGGTAACGGTTATGGGGTTGTGGAGG
TGGCGATGTCCTAGTTAG
back to top