mRNA_H-canaliculatus_F_contig13896.3088.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13896.3088.1
Unique NamemRNA_H-canaliculatus_F_contig13896.3088.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13896.3088.1 vs. uniprot
Match: D8LCK2_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK2_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 1.020e-57
Identity = 157/196 (80.10%), Postives = 167/196 (85.20%), Query Frame = 1 
Query:    1 KVGRSGGADLAAVLQRLAHAYHKVVLSRRLRQPPPLPPINRFRGPSNAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASWFTPFMSVSGLGLRCLAVLEDVWDAEVVAAASAAGFDLVVTTAFRRVRGTVDLVPDSPLCTRLDVGGLGKDEARSLLRRCSGLSLGAALPPSADGVIK 588
            +VGRSGG DLA +L RLAHAYH+VVL +RLR PPPLPPI+RFRGP N         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A+WFTP+MS  GLGLRCL VLEDVW+AEVVAAASAAGFDLVVTTAFR      DLVPDSPLCTRLDVGGL +DEARSLLRRCSGL+  A LPPSADGVIK
Sbjct:  654 QVGRSGGTDLACLLHRLAHAYHRVVLCKRLRNPPPLPPISRFRGPRNG---EAAAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATWFTPYMS--GLGLRCLVVLEDVWEAEVVAAASAAGFDLVVTTAFR------DLVPDSPLCTRLDVGGLARDEARSLLRRCSGLAWQAPLPPSADGVIK 838
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BLAST of mRNA_H-canaliculatus_F_contig13896.3088.1 vs. uniprot
Match: A0A6H5JQC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQC7_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 5.110e-55
Identity = 120/209 (57.42%), Postives = 129/209 (61.72%), Query Frame = 1 
Query:    1 KVGRSGGADLAAVLQRLAHAYHKVVLSRRLRQPPPLPPINRFRGPSNA-------------GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASWFTPFMSVSGLGLRCLAVLEDVWDAEVVAAASAAGFDLVVTTAFRRVRGTVDLVPDSPLCTRLDVGGLGKDEARSLLRRCSGLSLGAALPPSADGVIK 588
            +VG SGG DLA +L RLAHAYH+VVL +RLR PPPLPPI RFRGP NA              XX                                             A+WFTP+MS  GLGLRCL VLEDVW+AEVVAAASAAGFDLVVTTAFR      DLVPDSPLCTRLDVGGL +DEARSLLRRCSGL+  A LPPSADGVIK
Sbjct:  554 QVGLSGGKDLACLLHRLAHAYHRVVLCKRLRNPPPLPPIGRFRGPRNAEAAAXXXXXXXXXXXXCGVFSTMNATFKAAYNFRGIRCDDPLFPTFCLGLLLKAEATATAAATWFTPYMS--GLGLRCLVVLEDVWEAEVVAAASAAGFDLVVTTAFR------DLVPDSPLCTRLDVGGLARDEARSLLRRCSGLAWQAPLPPSADGVIK 754
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13896.3088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCK2_ECTSI1.020e-5780.10Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JQC7_9PHAE5.110e-5557.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13896contigH-canaliculatus_F_contig13896:209..2444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size588
Cds size588
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13896.3088.1prot_H-canaliculatus_F_contig13896.3088.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13896 209..2444 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929132.8434324-CDS-H-canaliculatus_F_contig13896:208..3501622929132.8434324-CDS-H-canaliculatus_F_contig13896:208..350Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13896 209..350 -
1696845689.72493-CDS-H-canaliculatus_F_contig13896:208..3501696845689.72493-CDS-H-canaliculatus_F_contig13896:208..350Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13896 209..350 -
1622929132.8582938-CDS-H-canaliculatus_F_contig13896:1130..13121622929132.8582938-CDS-H-canaliculatus_F_contig13896:1130..1312Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13896 1131..1312 -
1696845689.7336729-CDS-H-canaliculatus_F_contig13896:1130..13121696845689.7336729-CDS-H-canaliculatus_F_contig13896:1130..1312Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13896 1131..1312 -
1622929132.8689837-CDS-H-canaliculatus_F_contig13896:1612..16891622929132.8689837-CDS-H-canaliculatus_F_contig13896:1612..1689Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13896 1613..1689 -
1696845689.7461505-CDS-H-canaliculatus_F_contig13896:1612..16891696845689.7461505-CDS-H-canaliculatus_F_contig13896:1612..1689Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13896 1613..1689 -
1622929132.8803282-CDS-H-canaliculatus_F_contig13896:2257..24441622929132.8803282-CDS-H-canaliculatus_F_contig13896:2257..2444Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13896 2258..2444 -
1696845689.7550075-CDS-H-canaliculatus_F_contig13896:2257..24441696845689.7550075-CDS-H-canaliculatus_F_contig13896:2257..2444Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13896 2258..2444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13896.3088.1

>prot_H-canaliculatus_F_contig13896.3088.1 ID=prot_H-canaliculatus_F_contig13896.3088.1|Name=mRNA_H-canaliculatus_F_contig13896.3088.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=196bp
KVGRSGGADLAAVLQRLAHAYHKVVLSRRLRQPPPLPPINRFRGPSNAGG
TTAAAAAAAAAAAVESSGEDGGGEAAAATAVAVAAAASAEAAATAAASWF
TPFMSVSGLGLRCLAVLEDVWDAEVVAAASAAGFDLVVTTAFRRVRGTVD
LVPDSPLCTRLDVGGLGKDEARSLLRRCSGLSLGAALPPSADGVIK
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mRNA from alignment at H-canaliculatus_F_contig13896:209..2444-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13896.3088.1 ID=mRNA_H-canaliculatus_F_contig13896.3088.1|Name=mRNA_H-canaliculatus_F_contig13896.3088.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2236bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13896:209..2444- (Hapterophycus canaliculatus Oshoro5f female)
AAGGTTGGGCGCTCCGGTGGCGCCGATCTAGCTGCCGTGCTCCAGCGGCT
CGCCCACGCCTACCACAAGGTGGTGCTGTCGAGGCGGCTACGGCAACCCC
CCCCGCTCCCGCCAATCAACCGCTTCCGTGGACCGTCCAACGCGGGAGGC
ACGACGGCGGCGGCGGCGGCGGCTGCAGCTGCCGCTGGTGAGTATGTCGT
TGGTAAGAAAAGCGATGCTCTTCTCTGTTCCTGTCGGTCGGAGGCCGGAT
CGGAATAAAAAAAAATACGCTGTTGGAAGATTTCGGTGGACGATCCTGGT
CGGTGTTCCTGCTGGCGGAGGTACTCGTGCCCTTGTTGTTGTTGTTGTTG
TTGTTGTTGTCGACGTTGGAGGTGGTGGTGTTGGTGGTCGTGTTCGCCGC
TGCGTGCGACGCTCGCCGATGACCCTACCCGTGCTGTGGTCGTCGAGTGT
TAGATTTTGGGGATGGGAGTGGTCGGCGAGGTCGCTCTTGCGATTGCTGC
CCTCACGAGCACTCGCTGCTGGCCGAGCGGAGGCCCACGAGCCCCGGATA
CGCGGATGATGACTCCCTCTTTGCCCCAGCAAGAGTTGGGGCGGGACGCC
GGGCGCCGCCCCGCAGGCCTGCGGGGTTACCGGGGAAAGAGTCGCTACTG
TAGCTCGTTCCGACGCTCACGAACAGCGCCAAAGGTATCGAAGCCCAACC
CCTGGTGTATATTGACACGAAGACGACGACAACGCCCCCTCTCTGACAGC
CGCAGCCGTCGAGTCGTCGGGAGAGGACGGAGGAGGTGAAGCGGCGGCAG
CAACAGCGGTGGCAGTAGCGGCGGCAGCCTCGGTGAGTTTCTCGAAAGAT
GCAGCACCAGTAGCACCAGCACCAGGGGATGTTTGTGTTTTGTCCTCATG
GCCTATCACCTCTCCTTGTTTCGCTTCGTTCCAATCTTTGCGCGAGGCGC
CTTTTTTCCTTTCGTTTTCCTTCTTTTTCCTTCTTTTTCCTTCTTTTTTT
TCCTCTGAAACTGCGTGCGAAATTGCGGCATCTGCCAGGACGTTGACGCG
AAACCCTTCGAAACGCCCGTCCTCTCTCGTTGTATCCACCGCTTCTTGGT
CCGCTCTCCTCCTGCTTTTGCTCTCGTCGAAGGCGGAGGCCGCGGCCACC
GCCGCCGCGAGCTGGTTCACGCCCTTCATGTCCGTGTCCGGCCTGGGGCT
GCGGTGCCTGGCGGTGCTGGAAGACGTCTGGGACGCTGAAGTGGTGGCTG
CGGCGAGCGCGGCGGGTTTCGATCTCGTGGTAACGACGGCGTTCAGGCGA
GTTCGGGGCACCGTGTATGATGGCCGAGCATGGGCCTGTTGTGACGGCGT
TCAGGTTAGCCCGGGCGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTCGACGTCGTGGCTGTGACGACTGCC
CTCGCCAGCTTGAGACGGCGTTTGCGCGGGAGTTGACGGTGTGGTTTTGA
GTGATACCCGGTTGCATCGCCGGGGTAAGCGGTTGCGCGTGTTGAACGGG
GTTGGCGTTTCGTCATTGTTTTCCATATGGGGGTTGGTTTGCTGTGTGGC
GTGTGGCTTGTTTCCGACGTTGCGACATACGCGCTGCTCGCGACCGGCAG
CGGCGTCGTTATCTTTTTTTTTGCTGGGCGTGGATGGCGCTGCAGAGCTT
CCGAGATAAAAAGGCGAACCTTGAAAACCCGTATCGAAAAGCACCAATAA
GACACACGATACCGGAACACCAAAAGGTGAGAAGGAGACCGACAAGCACA
ACGAAATACAAAAAGGAGGATCCCCCATCGTCCGTCTCTACTGACACGCA
TAAAATGTCTTGCCTGACACCATGAATTGTCTTCACACCATCCTGAACCC
TCACTATAAGGAATTCAACAAAAATCCTCCCGAGTCGCTCTTAATTTTGG
CTCAGCGGAGGTTATTCCTTTGGTGTTGTTGACTCTTTCTCCTAGAAACG
AAGGTGGGAAGCAAAACACCAGTGGGAAAATATGGAAACACTCTCTATTC
GAGGGCACGGAACAAACCAAGTGCTCTGCGTATGCGTGTGCCAGGGACTT
GGTGCCCGACTCCCCGCTGTGCACCCGGCTGGACGTCGGGGGTCTCGGGA
AGGACGAAGCGAGGTCTCTGCTCCGGCGGTGCAGCGGGCTGAGCTTGGGG
GCCGCGCTCCCCCCTTCGGCGGACGGGGTCATCAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13896:209..2444-

>mRNA_H-canaliculatus_F_contig13896.3088.1 ID=mRNA_H-canaliculatus_F_contig13896.3088.1|Name=mRNA_H-canaliculatus_F_contig13896.3088.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1176bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13896:209..2444- (Hapterophycus canaliculatus Oshoro5f female)
AAGGTTGGGCGCTCCGGTGGCGCCGATCTAGCTGCCGTGCTCCAGCGGCT
CGCCCACGCCTACCACAAGGTGGTGCTGTCGAGGCGGCTACGGCAACCCC
CCCCGCTCCCGCCAATCAACCGCTTCCGTGGACCGTCCAACGCGGGAGGC
ACGACGGCGGCGGCGGCGGCGGCTGCAGCTGCCGCTGAAGGTTGGGCGCT
CCGGTGGCGCCGATCTAGCTGCCGTGCTCCAGCGGCTCGCCCACGCCTAC
CACAAGGTGGTGCTGTCGAGGCGGCTACGGCAACCCCCCCCGCTCCCGCC
AATCAACCGCTTCCGTGGACCGTCCAACGCGGGAGGCACGACGGCGGCGG
CGGCGGCGGCTGCAGCTGCCGCTGCCGTCGAGTCGTCGGGAGAGGACGGA
GGAGGTGAAGCGGCGGCAGCAACAGCGGTGGCAGTAGCGGCGGCAGCCTC
GCCGTCGAGTCGTCGGGAGAGGACGGAGGAGGTGAAGCGGCGGCAGCAAC
AGCGGTGGCAGTAGCGGCGGCAGCCTCGGCGGAGGCCGCGGCCACCGCCG
CCGCGAGCTGGTTCACGCCCTTCATGTCCGTGTCCGGCCTGGGGCTGCGG
TGCCTGGCGGTGCTGGAAGACGTCTGGGACGCTGAAGTGGTGGCTGCGGC
GAGCGCGGCGGGTTTCGATCTCGTGGTAACGACGGCGTTCAGGCGAGTTC
GGGGCACCGTGCGGAGGCCGCGGCCACCGCCGCCGCGAGCTGGTTCACGC
CCTTCATGTCCGTGTCCGGCCTGGGGCTGCGGTGCCTGGCGGTGCTGGAA
GACGTCTGGGACGCTGAAGTGGTGGCTGCGGCGAGCGCGGCGGGTTTCGA
TCTCGTGGTAACGACGGCGTTCAGGCGAGTTCGGGGCACCGTGGACTTGG
TGCCCGACTCCCCGCTGTGCACCCGGCTGGACGTCGGGGGTCTCGGGAAG
GACGAAGCGAGGTCTCTGCTCCGGCGGTGCAGCGGGCTGAGCTTGGGGGC
CGCGCTCCCCCCTTCGGCGGACGGGGTCATCAAGGGACTTGGTGCCCGAC
TCCCCGCTGTGCACCCGGCTGGACGTCGGGGGTCTCGGGAAGGACGAAGC
GAGGTCTCTGCTCCGGCGGTGCAGCGGGCTGAGCTTGGGGGCCGCGCTCC
CCCCTTCGGCGGACGGGGTCATCAAG
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