mRNA_H-canaliculatus_F_contig13885.3083.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13885.3083.1
Unique NamemRNA_H-canaliculatus_F_contig13885.3083.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13885.3083.1 vs. uniprot
Match: A0A6H5L6Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y7_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 2.090e-12
Identity = 32/36 (88.89%), Postives = 34/36 (94.44%), Query Frame = 1 
Query:   64 LWDLLRLHHIFLATAASVARCEASVHVPPVADNGDG 171
            LWDLLRLHH+FLATAASVA C+A VHVPPVADNGDG
Sbjct:  876 LWDLLRLHHVFLATAASVAGCQADVHVPPVADNGDG 911
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13885.3083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L6Y7_9PHAE2.090e-1288.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13885contigH-canaliculatus_F_contig13885:1920..2223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionTranscription factor IIIC, 90kDa subunit, N-terminal
Ec32 orthologEc-05_005910.2
Hectar predicted targeting categoryother localisation
Exons1
Model size304
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929132.2297382-CDS-H-canaliculatus_F_contig13885:1919..22221622929132.2297382-CDS-H-canaliculatus_F_contig13885:1919..2222Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13885 1920..2222 +
1696845689.5603795-CDS-H-canaliculatus_F_contig13885:1919..22221696845689.5603795-CDS-H-canaliculatus_F_contig13885:1919..2222Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13885 1920..2222 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13885.3083.1prot_H-canaliculatus_F_contig13885.3083.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13885 1920..2222 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13885.3083.1

>prot_H-canaliculatus_F_contig13885.3083.1 ID=prot_H-canaliculatus_F_contig13885.3083.1|Name=mRNA_H-canaliculatus_F_contig13885.3083.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=101bp
GGRVSPSSSSGGGSGGAPSAHLWDLLRLHHIFLATAASVARCEASVHVPP
VADNGDGGGPAEKDRDDGDDDDDDDDDDEDEEEEEEEDDDDVDGDDDDGE
G
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mRNA from alignment at H-canaliculatus_F_contig13885:1920..2223+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13885.3083.1 ID=mRNA_H-canaliculatus_F_contig13885.3083.1|Name=mRNA_H-canaliculatus_F_contig13885.3083.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=304bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13885:1920..2223+ (Hapterophycus canaliculatus Oshoro5f female)
GGCGGCAGGGTCAGCCCCAGTAGCAGCAGCGGCGGCGGCAGCGGCGGTGC
CCCCTCCGCGCATCTTTGGGATCTGCTGCGCCTGCACCACATCTTTTTGG
CGACGGCGGCGAGCGTGGCCCGCTGCGAGGCCTCCGTCCACGTGCCGCCG
GTGGCAGACAACGGTGACGGGGGAGGACCCGCCGAAAAAGACAGAGATGA
CGGAGATGACGACGACGACGACGATGACGACGACGAAGATGAAGAGGAGG
AGGAGGAGGAGGATGACGATGATGTCGATGGTGACGACGATGATGGCGAG
GGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13885:1920..2223+

>mRNA_H-canaliculatus_F_contig13885.3083.1 ID=mRNA_H-canaliculatus_F_contig13885.3083.1|Name=mRNA_H-canaliculatus_F_contig13885.3083.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=606bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13885:1920..2223+ (Hapterophycus canaliculatus Oshoro5f female)
GGCGGCAGGGTCAGCCCCAGTAGCAGCAGCGGCGGCGGCAGCGGCGGTGC
CCCCTCCGCGCATCTTTGGGATCTGCTGCGCCTGCACCACATCTTTTTGG
CGACGGCGGCGAGCGTGGCCCGCTGCGAGGCCTCCGTCCACGTGCCGCCG
GTGGCAGACAACGGTGACGGGGGAGGACCCGCCGAAAAAGACAGAGATGA
CGGAGATGACGACGACGACGACGATGACGACGACGAAGATGAAGAGGAGG
AGGAGGAGGAGGATGACGATGATGTCGATGGTGACGACGATGATGGCGAG
GGAGGCGGCAGGGTCAGCCCCAGTAGCAGCAGCGGCGGCGGCAGCGGCGG
TGCCCCCTCCGCGCATCTTTGGGATCTGCTGCGCCTGCACCACATCTTTT
TGGCGACGGCGGCGAGCGTGGCCCGCTGCGAGGCCTCCGTCCACGTGCCG
CCGGTGGCAGACAACGGTGACGGGGGAGGACCCGCCGAAAAAGACAGAGA
TGACGGAGATGACGACGACGACGACGATGACGACGACGAAGATGAAGAGG
AGGAGGAGGAGGAGGATGACGATGATGTCGATGGTGACGACGATGATGGC
GAGGGA
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