mRNA_H-canaliculatus_F_contig13885.3082.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13885.3082.1
Unique NamemRNA_H-canaliculatus_F_contig13885.3082.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13885.3082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13885contigH-canaliculatus_F_contig13885:1197..1802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size606
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13885.3082.1prot_H-canaliculatus_F_contig13885.3082.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13885 1217..1537 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929132.1334364-UTR-H-canaliculatus_F_contig13885:1196..12161622929132.1334364-UTR-H-canaliculatus_F_contig13885:1196..1216Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13885 1197..1216 +
1696845689.5344956-UTR-H-canaliculatus_F_contig13885:1196..12161696845689.5344956-UTR-H-canaliculatus_F_contig13885:1196..1216Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13885 1197..1216 +
1622929132.1691108-UTR-H-canaliculatus_F_contig13885:1537..18021622929132.1691108-UTR-H-canaliculatus_F_contig13885:1537..1802Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13885 1538..1802 +
1696845689.5515654-UTR-H-canaliculatus_F_contig13885:1537..18021696845689.5515654-UTR-H-canaliculatus_F_contig13885:1537..1802Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13885 1538..1802 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929132.1529374-CDS-H-canaliculatus_F_contig13885:1216..15371622929132.1529374-CDS-H-canaliculatus_F_contig13885:1216..1537Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13885 1217..1537 +
1696845689.543124-CDS-H-canaliculatus_F_contig13885:1216..15371696845689.543124-CDS-H-canaliculatus_F_contig13885:1216..1537Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13885 1217..1537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13885.3082.1

>prot_H-canaliculatus_F_contig13885.3082.1 ID=prot_H-canaliculatus_F_contig13885.3082.1|Name=mRNA_H-canaliculatus_F_contig13885.3082.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=107bp
MLVLEHGPQYRIRDAPFPPTIRTNPASSLGCVELTTTHSPARFPPPARPP
IESRVTPPLPQTPSTPAREIHKSRAWALVRRCNQVSLSVKSAGWPKDDPK
PPALQK*
back to top

mRNA from alignment at H-canaliculatus_F_contig13885:1197..1802+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13885.3082.1 ID=mRNA_H-canaliculatus_F_contig13885.3082.1|Name=mRNA_H-canaliculatus_F_contig13885.3082.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=606bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13885:1197..1802+ (Hapterophycus canaliculatus Oshoro5f female)
TTTTTACCGTGTTGTTCCGGATGCTGGTCTTGGAACATGGGCCCCAGTAC
CGCATCCGCGACGCCCCCTTCCCCCCAACTATTCGCACGAATCCAGCGAG
CTCTCTCGGATGCGTTGAACTCACTACCACCCATAGTCCAGCACGGTTCC
CTCCACCGGCTCGTCCTCCGATTGAAAGCCGGGTAACTCCACCGCTCCCG
CAAACGCCATCGACCCCAGCGAGAGAGATCCACAAATCTCGAGCGTGGGC
GCTTGTTCGACGATGCAACCAAGTGTCCTTGTCGGTGAAAAGCGCTGGAT
GGCCGAAGGATGATCCGAAGCCACCTGCTTTGCAAAAATGAAAAACCGCC
CCGACGAAAATACTTGCGCACGTATCAAGTACCCAGATCTACCGCGAAAC
GCTTCCCTCGCCCCTCTGCCCCCACCCCTTCTCTCCATCGAATACCTTGG
TGAGTGCCTGCCTGACCGTCGTTCATGGCACCGGTTTTGGAAACACCCTG
CCTTTCCTCGGACTCCCAGGTGCACAGCAGCCATGAGAAGCCCGTTACGT
TCTCCCTCGTGCCGACTCTTCGCCGTGCCCTTGAGGATGCGGTTCTCAAG
ACGGCG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13885:1197..1802+

>mRNA_H-canaliculatus_F_contig13885.3082.1 ID=mRNA_H-canaliculatus_F_contig13885.3082.1|Name=mRNA_H-canaliculatus_F_contig13885.3082.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=642bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13885:1197..1802+ (Hapterophycus canaliculatus Oshoro5f female)
ATGCTGGTCTTGGAACATGGGCCCCAGTACCGCATCCGCGACGCCCCCTT
CCCCCCAACTATTCGCACGAATCCAGCGAGCTCTCTCGGATGCGTTGAAC
TCACTACCACCCATAGTCCAGCACGGTTCCCTCCACCGGCTCGTCCTCCG
ATTGAAAGCCGGGTAACTCCACCGCTCCCGCAAACGCCATCGACCCCAGC
GAGAGAGATCCACAAATCTCGAGCGTGGGCGCTTGTTCGACGATGCAACC
AAGTGTCCTTGTCGGTGAAAAGCGCTGGATGGCCGAAGGATGATCCGAAG
CCACCTGCTTTGCAAAAATGAATGCTGGTCTTGGAACATGGGCCCCAGTA
CCGCATCCGCGACGCCCCCTTCCCCCCAACTATTCGCACGAATCCAGCGA
GCTCTCTCGGATGCGTTGAACTCACTACCACCCATAGTCCAGCACGGTTC
CCTCCACCGGCTCGTCCTCCGATTGAAAGCCGGGTAACTCCACCGCTCCC
GCAAACGCCATCGACCCCAGCGAGAGAGATCCACAAATCTCGAGCGTGGG
CGCTTGTTCGACGATGCAACCAAGTGTCCTTGTCGGTGAAAAGCGCTGGA
TGGCCGAAGGATGATCCGAAGCCACCTGCTTTGCAAAAATGA
back to top