mRNA_H-canaliculatus_F_contig13879.3077.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13879.3077.1
Unique NamemRNA_H-canaliculatus_F_contig13879.3077.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig13879.3077.1 vs. uniprot
Match: D8LHP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHP2_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 3.920e-34
Identity = 60/65 (92.31%), Postives = 65/65 (100.00%), Query Frame = 1
Query:    1 RNLQVARKVYWFEKFNWFITSENFLVLSGRNAQQNEVVVKKYLRPGDIYVHADLHGAASCVVRNK 195
            R+LQVARKVYWFEKFNWFI+SEN+LV+SGRNAQQNEVVVKKYLRPGDIYVHADLHGA+SCVVRNK
Sbjct:  657 RSLQVARKVYWFEKFNWFISSENYLVISGRNAQQNEVVVKKYLRPGDIYVHADLHGASSCVVRNK 721          
BLAST of mRNA_H-canaliculatus_F_contig13879.3077.1 vs. uniprot
Match: A0A8B9GSV1_ASTMX (NFACT-R_1 domain-containing protein n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9GSV1_ASTMX)

HSP 1 Score: 108 bits (269), Expect = 6.050e-29
Identity = 46/62 (74.19%), Postives = 57/62 (91.94%), Query Frame = 1
Query:    7 LQVARKVYWFEKFNWFITSENFLVLSGRNAQQNEVVVKKYLRPGDIYVHADLHGAASCVVRN 192
            +Q ARKVYWFEKF WFI+SEN+LV++GR+ QQNE++VK+YLR GDIYVHADLHGA SCV++N
Sbjct:   48 IQKARKVYWFEKFLWFISSENYLVIAGRDQQQNEMIVKRYLRAGDIYVHADLHGATSCVIKN 109          
BLAST of mRNA_H-canaliculatus_F_contig13879.3077.1 vs. uniprot
Match: A0A3Q3KZ28_9LABR (NFACT-R_1 domain-containing protein n=4 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3Q3KZ28_9LABR)

HSP 1 Score: 108 bits (269), Expect = 6.780e-29
Identity = 46/62 (74.19%), Postives = 57/62 (91.94%), Query Frame = 1
Query:    7 LQVARKVYWFEKFNWFITSENFLVLSGRNAQQNEVVVKKYLRPGDIYVHADLHGAASCVVRN 192
            +Q ARKVYWFEKF WFI+SEN+LV++GR+ QQNE++VK+YLR GDIYVHADLHGA SCV++N
Sbjct:   60 IQKARKVYWFEKFLWFISSENYLVIAGRDQQQNEMIVKRYLRAGDIYVHADLHGATSCVIKN 121          
BLAST of mRNA_H-canaliculatus_F_contig13879.3077.1 vs. uniprot
Match: A0A3Q3JY82_MONAL (NFACT-R_1 domain-containing protein n=2 Tax=Percomorphaceae TaxID=1489872 RepID=A0A3Q3JY82_MONAL)

HSP 1 Score: 107 bits (266), Expect = 1.830e-28
Identity = 44/62 (70.97%), Postives = 56/62 (90.32%), Query Frame = 1
Query:    7 LQVARKVYWFEKFNWFITSENFLVLSGRNAQQNEVVVKKYLRPGDIYVHADLHGAASCVVRN 192
            +Q ARKVYWFEKF WFI+SEN+L+++GR+ QQNE++VK+Y R GDIYVHADLHGA SCV++N
Sbjct:   60 IQKARKVYWFEKFLWFISSENYLIIAGRDQQQNEIIVKRYFRAGDIYVHADLHGATSCVIKN 121          
BLAST of mRNA_H-canaliculatus_F_contig13879.3077.1 vs. uniprot
Match: A0A3B4BJB3_9GOBI (Nuclear export mediator factor n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B4BJB3_9GOBI)

HSP 1 Score: 106 bits (265), Expect = 3.000e-28
Identity = 44/62 (70.97%), Postives = 57/62 (91.94%), Query Frame = 1
Query:    7 LQVARKVYWFEKFNWFITSENFLVLSGRNAQQNEVVVKKYLRPGDIYVHADLHGAASCVVRN 192
            +Q ARKVYWFEKF WFI++EN+LV++GR+ QQNE++VK+YLR GD+YVHADLHGA SCV++N
Sbjct:   59 IQKARKVYWFEKFLWFISAENYLVIAGRDQQQNEMIVKRYLRAGDVYVHADLHGATSCVIKN 120          
BLAST of mRNA_H-canaliculatus_F_contig13879.3077.1 vs. uniprot
Match: A0A6U1AHC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1AHC6_9STRA)

HSP 1 Score: 114 bits (284), Expect = 6.390e-28
Identity = 49/65 (75.38%), Postives = 59/65 (90.77%), Query Frame = 1
Query:    1 RNLQVARKVYWFEKFNWFITSENFLVLSGRNAQQNEVVVKKYLRPGDIYVHADLHGAASCVVRNK 195
            R L+  RK YWFEKF+WFITSENFLVL+GR+AQQNE +VK+YLRPGD YVHAD+HGA+SC++RNK
Sbjct:  520 RQLKAVRKPYWFEKFHWFITSENFLVLAGRDAQQNEQLVKRYLRPGDAYVHADMHGASSCILRNK 584          
BLAST of mRNA_H-canaliculatus_F_contig13879.3077.1 vs. uniprot
Match: A0A8M9PZY7_DANRE (nuclear export mediator factor Nemf-like n=1 Tax=Danio rerio TaxID=7955 RepID=A0A8M9PZY7_DANRE)

HSP 1 Score: 106 bits (265), Expect = 1.000e-27
Identity = 43/63 (68.25%), Postives = 58/63 (92.06%), Query Frame = 1
Query:    4 NLQVARKVYWFEKFNWFITSENFLVLSGRNAQQNEVVVKKYLRPGDIYVHADLHGAASCVVRN 192
            ++Q ARKVYWFEKF WF++SEN+L+++GR+ QQNE++VK+YLR GD+YVHADLHGA SCV++N
Sbjct:   82 SIQKARKVYWFEKFLWFLSSENYLIIAGRDQQQNEMIVKRYLRAGDLYVHADLHGATSCVIKN 144          
BLAST of mRNA_H-canaliculatus_F_contig13879.3077.1 vs. uniprot
Match: A0A0S7LM57_9TELE (NEMF (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7LM57_9TELE)

HSP 1 Score: 107 bits (268), Expect = 1.090e-27
Identity = 45/62 (72.58%), Postives = 57/62 (91.94%), Query Frame = 1
Query:    7 LQVARKVYWFEKFNWFITSENFLVLSGRNAQQNEVVVKKYLRPGDIYVHADLHGAASCVVRN 192
            +Q ARKVYWFEKF WFI+SEN+LV++GR+ QQNE++VK+YLR GD+YVHADLHGA SCV++N
Sbjct:   15 IQKARKVYWFEKFLWFISSENYLVIAGRDQQQNEMIVKRYLRSGDVYVHADLHGATSCVIKN 76          
BLAST of mRNA_H-canaliculatus_F_contig13879.3077.1 vs. uniprot
Match: A0A3B3QMV0_9TELE (NFACT-R_1 domain-containing protein n=1 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3QMV0_9TELE)

HSP 1 Score: 106 bits (265), Expect = 1.200e-27
Identity = 44/62 (70.97%), Postives = 57/62 (91.94%), Query Frame = 1
Query:    7 LQVARKVYWFEKFNWFITSENFLVLSGRNAQQNEVVVKKYLRPGDIYVHADLHGAASCVVRN 192
            +Q ARKVYWFEKF WFI+SEN+L+++GR+ QQNE++VK+YL+ GDIYVHADLHGA SCV++N
Sbjct:   59 IQKARKVYWFEKFLWFISSENYLIIAGRDQQQNEMIVKRYLKTGDIYVHADLHGATSCVIKN 120          
BLAST of mRNA_H-canaliculatus_F_contig13879.3077.1 vs. uniprot
Match: A0A7S2T9B4_9CHLO (Hypothetical protein (Fragment) n=2 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S2T9B4_9CHLO)

HSP 1 Score: 106 bits (264), Expect = 1.500e-27
Identity = 45/62 (72.58%), Postives = 58/62 (93.55%), Query Frame = 1
Query:   10 QVARKVYWFEKFNWFITSENFLVLSGRNAQQNEVVVKKYLRPGDIYVHADLHGAASCVVRNK 195
            +VARK YWFEKF+WF++SEN+LV+SGR+AQQNE++VK+YL   D+YVHAD+HGAASCVVRN+
Sbjct:   41 KVARKQYWFEKFDWFVSSENYLVVSGRDAQQNELLVKRYLTTHDVYVHADIHGAASCVVRNR 102          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13879.3077.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHP2_ECTSI3.920e-3492.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8B9GSV1_ASTMX6.050e-2974.19NFACT-R_1 domain-containing protein n=1 Tax=Astyan... [more]
A0A3Q3KZ28_9LABR6.780e-2974.19NFACT-R_1 domain-containing protein n=4 Tax=Percom... [more]
A0A3Q3JY82_MONAL1.830e-2870.97NFACT-R_1 domain-containing protein n=2 Tax=Percom... [more]
A0A3B4BJB3_9GOBI3.000e-2870.97Nuclear export mediator factor n=1 Tax=Periophthal... [more]
A0A6U1AHC6_9STRA6.390e-2875.38Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8M9PZY7_DANRE1.000e-2768.25nuclear export mediator factor Nemf-like n=1 Tax=D... [more]
A0A0S7LM57_9TELE1.090e-2772.58NEMF (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]
A0A3B3QMV0_9TELE1.200e-2770.97NFACT-R_1 domain-containing protein n=1 Tax=Paramo... [more]
A0A7S2T9B4_9CHLO1.500e-2772.58Hypothetical protein (Fragment) n=2 Tax=Chloropico... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13879contigH-canaliculatus_F_contig13879:750..944 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.3
Seed ortholog evalue1.6e-28
Seed eggNOG ortholog2880.D8LHP2
KEGG koko:K10589
KEGG Pathwayko04120,map04120
EggNOG free text desc.actin binding
EggNOG OGsCOG1293@1,KOG2030@2759
EC2.3.2.26
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929131.6946287-CDS-H-canaliculatus_F_contig13879:749..9441622929131.6946287-CDS-H-canaliculatus_F_contig13879:749..944Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13879 750..944 -
1696845689.331612-CDS-H-canaliculatus_F_contig13879:749..9441696845689.331612-CDS-H-canaliculatus_F_contig13879:749..944Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13879 750..944 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13879.3077.1prot_H-canaliculatus_F_contig13879.3077.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13879 750..944 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13879.3077.1

>prot_H-canaliculatus_F_contig13879.3077.1 ID=prot_H-canaliculatus_F_contig13879.3077.1|Name=mRNA_H-canaliculatus_F_contig13879.3077.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=65bp
RNLQVARKVYWFEKFNWFITSENFLVLSGRNAQQNEVVVKKYLRPGDIYV
HADLHGAASCVVRNK
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mRNA from alignment at H-canaliculatus_F_contig13879:750..944-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13879.3077.1 ID=mRNA_H-canaliculatus_F_contig13879.3077.1|Name=mRNA_H-canaliculatus_F_contig13879.3077.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=195bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13879:750..944- (Hapterophycus canaliculatus Oshoro5f female)
CGGAACCTCCAGGTAGCTCGCAAGGTCTACTGGTTCGAGAAATTCAACTG GTTCATCACCTCGGAGAACTTCCTCGTCCTCAGCGGCCGGAATGCCCAGC AGAACGAGGTGGTCGTGAAGAAGTACCTCAGGCCCGGCGACATCTACGTG CACGCCGACCTCCACGGCGCCGCCTCCTGCGTCGTCAGAAACAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13879:750..944-

>mRNA_H-canaliculatus_F_contig13879.3077.1 ID=mRNA_H-canaliculatus_F_contig13879.3077.1|Name=mRNA_H-canaliculatus_F_contig13879.3077.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=390bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13879:750..944- (Hapterophycus canaliculatus Oshoro5f female)
CGGAACCTCCAGGTAGCTCGCAAGGTCTACTGGTTCGAGAAATTCAACTG
GTTCATCACCTCGGAGAACTTCCTCGTCCTCAGCGGCCGGAATGCCCAGC
AGAACGAGGTGGTCGTGAAGAAGTACCTCAGGCCCGGCGACATCTACGTG
CACGCCGACCTCCACGGCGCCGCCTCCTGCGTCGTCAGAAACAAGCGGAA
CCTCCAGGTAGCTCGCAAGGTCTACTGGTTCGAGAAATTCAACTGGTTCA
TCACCTCGGAGAACTTCCTCGTCCTCAGCGGCCGGAATGCCCAGCAGAAC
GAGGTGGTCGTGAAGAAGTACCTCAGGCCCGGCGACATCTACGTGCACGC
CGACCTCCACGGCGCCGCCTCCTGCGTCGTCAGAAACAAG
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