mRNA_H-canaliculatus_F_contig13878.3076.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13878.3076.1
Unique NamemRNA_H-canaliculatus_F_contig13878.3076.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13878.3076.1 vs. uniprot
Match: D8LLZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ4_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 3.520e-21
Identity = 54/58 (93.10%), Postives = 56/58 (96.55%), Query Frame = 1 
Query:   94 RSPRWTVGAAVAGRLEEMRARELGASLRAKVQENEAMKRYVESVTEEMRALQLKVSRQ 267
            RSPRWTVGAAVAGRLE MRARELGASLRAKVQENEAMKRYVESVTEEMRALQ K+S+Q
Sbjct:  337 RSPRWTVGAAVAGRLEGMRARELGASLRAKVQENEAMKRYVESVTEEMRALQQKISQQ 394
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BLAST of mRNA_H-canaliculatus_F_contig13878.3076.1 vs. uniprot
Match: A0A6H5JD62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD62_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 8.000e-18
Identity = 55/68 (80.88%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:   25 SSGQLPEGDGRGAGXXXGMVGGGRSPRWTVGAAVAGRLEEMRARELGASLRAKVQENEAMKRYVESVT 228
            SS    EGDGRG        GGGRSPRWTVGAAVAGRLE MRARELGASLRAKVQENEAMKRYVESVT
Sbjct:  436 SSRGFSEGDGRG-------NGGGRSPRWTVGAAVAGRLEGMRARELGASLRAKVQENEAMKRYVESVT 496
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13878.3076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLZ4_ECTSI3.520e-2193.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JD62_9PHAE8.000e-1880.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13878contigH-canaliculatus_F_contig13878:1115..1867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue7.6e-19
Seed eggNOG ortholog2880.D8LLZ4
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size493
Cds size492
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929131.6461256-CDS-H-canaliculatus_F_contig13878:1114..13421622929131.6461256-CDS-H-canaliculatus_F_contig13878:1114..1342Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13878 1115..1342 +
1696845689.3032079-CDS-H-canaliculatus_F_contig13878:1114..13421696845689.3032079-CDS-H-canaliculatus_F_contig13878:1114..1342Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13878 1115..1342 +
1622929131.6560397-CDS-H-canaliculatus_F_contig13878:1603..18671622929131.6560397-CDS-H-canaliculatus_F_contig13878:1603..1867Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13878 1604..1867 +
1696845689.3191223-CDS-H-canaliculatus_F_contig13878:1603..18671696845689.3191223-CDS-H-canaliculatus_F_contig13878:1603..1867Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13878 1604..1867 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13878.3076.1prot_H-canaliculatus_F_contig13878.3076.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13878 1115..1867 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13878.3076.1

>prot_H-canaliculatus_F_contig13878.3076.1 ID=prot_H-canaliculatus_F_contig13878.3076.1|Name=mRNA_H-canaliculatus_F_contig13878.3076.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=164bp
MTAARGGSSSGQLPEGDGRGAGGGGGMVGGGRSPRWTVGAAVAGRLEEMR
ARELGASLRAKVQENEAMKRYVESVTEEMRALQLKVSRQPSPCPLSSPLP
PSPPPPLSPSSFASAAGRAHLPRSSVGGSASIAEIVARGVYGVDGIASRQ
HLTSSGGGGGGGGG
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mRNA from alignment at H-canaliculatus_F_contig13878:1115..1867+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13878.3076.1 ID=mRNA_H-canaliculatus_F_contig13878.3076.1|Name=mRNA_H-canaliculatus_F_contig13878.3076.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=753bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13878:1115..1867+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACGGCTGCCCGGGGAGGTTCTTCGTCCGGCCAGTTACCGGAAGGAGA
TGGAAGGGGTGCCGGGGGGGGCGGTGGAATGGTTGGGGGCGGGCGGAGCC
CCCGATGGACCGTGGGCGCGGCCGTTGCGGGGCGGTTGGAGGAGATGAGG
GCCCGTGAGCTCGGCGCGAGCCTCCGGGCGAAGGTGCAGGAGAACGAGGC
CATGAAGCGATACGTCGAATCTGTCACGGTGCGTCCCGCCCTGATTACTG
TTGTCGTTGTTGTGGTGGTGGTGGTGAGAGTGGTGGTGCCGCCGGTCTAG
AAAAATTTTGTCGCGGACCGTCCCCCGAAACACTTCCAACGGTAATTTTT
GGTCCGTGCTCCATACCGCAAGTCTGGCCTCGCTAACCCAACCTCCGATG
GCGAATTACGCTCAACGATCGGGGCTTACTTGGTCGTCAGCGAGCTAACT
GACCTAACCCGGTCGCAAAACAAACGAAATTACCCGCAGGAGGAGATGCG
CGCGCTGCAGCTGAAGGTGTCGCGCCAGCCGTCGCCGTGCCCGCTATCGT
CGCCGCTGCCGCCATCGCCACCCCCGCCCCTGTCACCGTCCTCCTTCGCC
TCCGCGGCGGGAAGGGCTCACCTCCCCCGCAGCTCCGTCGGCGGATCAGC
CTCGATCGCCGAGATTGTGGCCCGCGGCGTGTACGGCGTGGACGGCATCG
CATCGCGGCAGCACCTCACAAGCAGTGGCGGCGGCGGCGGCGGCGGCGGC
GGT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13878:1115..1867+

>mRNA_H-canaliculatus_F_contig13878.3076.1 ID=mRNA_H-canaliculatus_F_contig13878.3076.1|Name=mRNA_H-canaliculatus_F_contig13878.3076.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=984bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13878:1115..1867+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACGGCTGCCCGGGGAGGTTCTTCGTCCGGCCAGTTACCGGAAGGAGA
TGGAAGGGGTGCCGGGGGGGGCGGTGGAATGGTTGGGGGCGGGCGGAGCC
CCCGATGGACCGTGGGCGCGGCCGTTGCGGGGCGGTTGGAGGAGATGAGG
GCCCGTGAGCTCGGCGCGAGCCTCCGGGCGAAGGTGCAGGAGAACGAGGC
CATGAAGCGATACGTCGAATCTGTCACGATGACGGCTGCCCGGGGAGGTT
CTTCGTCCGGCCAGTTACCGGAAGGAGATGGAAGGGGTGCCGGGGGGGGC
GGTGGAATGGTTGGGGGCGGGCGGAGCCCCCGATGGACCGTGGGCGCGGC
CGTTGCGGGGCGGTTGGAGGAGATGAGGGCCCGTGAGCTCGGCGCGAGCC
TCCGGGCGAAGGTGCAGGAGAACGAGGCCATGAAGCGATACGTCGAATCT
GTCACGGAGGAGATGCGCGCGCTGCAGCTGAAGGTGTCGCGCCAGCCGTC
GCCGTGCCCGCTATCGTCGCCGCTGCCGCCATCGCCACCCCCGCCCCTGT
CACCGTCCTCCTTCGCCTCCGCGGCGGGAAGGGCTCACCTCCCCCGCAGC
TCCGTCGGCGGATCAGCCTCGATCGCCGAGATTGTGGCCCGCGGCGTGTA
CGGCGTGGACGGCATCGCATCGCGGCAGCACCTCACAAGCAGTGGCGGCG
GCGGCGGCGGCGGCGGCGGTGAGGAGATGCGCGCGCTGCAGCTGAAGGTG
TCGCGCCAGCCGTCGCCGTGCCCGCTATCGTCGCCGCTGCCGCCATCGCC
ACCCCCGCCCCTGTCACCGTCCTCCTTCGCCTCCGCGGCGGGAAGGGCTC
ACCTCCCCCGCAGCTCCGTCGGCGGATCAGCCTCGATCGCCGAGATTGTG
GCCCGCGGCGTGTACGGCGTGGACGGCATCGCATCGCGGCAGCACCTCAC
AAGCAGTGGCGGCGGCGGCGGCGGCGGCGGCGGT
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