mRNA_H-canaliculatus_F_contig13876.3074.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13876.3074.1
Unique NamemRNA_H-canaliculatus_F_contig13876.3074.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13876.3074.1 vs. uniprot
Match: D8LDF4_ECTSI (5'-nucleotidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDF4_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 2.860e-26
Identity = 58/73 (79.45%), Postives = 67/73 (91.78%), Query Frame = 3 
Query:  744 KMSRRRNVLLLGDSLGDLNMAKGVDADETLTVGFLNDKVEERMDAYLEAYDVVILGDGGFDFVLKLLEEVASR 962
            +M  R +VLLLGDSLGDLNMAKG+ A+E LTVGFLNDK+EER DAYL+AYDV+ILGDGGFDFVL+LLEEVAS+
Sbjct:  194 EMRCRSSVLLLGDSLGDLNMAKGLSAEEILTVGFLNDKIEERTDAYLKAYDVIILGDGGFDFVLELLEEVASK 266
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BLAST of mRNA_H-canaliculatus_F_contig13876.3074.1 vs. uniprot
Match: A0A6H5JI70_9PHAE (5'-nucleotidase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI70_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 3.170e-26
Identity = 60/73 (82.19%), Postives = 67/73 (91.78%), Query Frame = 3 
Query:  744 KMSRRRNVLLLGDSLGDLNMAKGVDADETLTVGFLNDKVEERMDAYLEAYDVVILGDGGFDFVLKLLEEVASR 962
            +M  R NVLLLGDSLGDLNMAKG+ A+ETLTVGFLNDKVEER DAYL+AYDVVILGDG FDFVL+LLE+VAS+
Sbjct:  228 EMRCRSNVLLLGDSLGDLNMAKGLRAEETLTVGFLNDKVEERADAYLKAYDVVILGDGSFDFVLELLEQVASK 300
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BLAST of mRNA_H-canaliculatus_F_contig13876.3074.1 vs. uniprot
Match: A0A0D2U9Z3_CAPO3 (5'-nucleotidase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2U9Z3_CAPO3)

HSP 1 Score: 92.4 bits (228), Expect = 1.430e-16
Identity = 48/94 (51.06%), Postives = 62/94 (65.96%), Query Frame = 3 
Query:  684 NLVPACVPTCTVHRSGGSGTKMSRRRNVLLLGDSLGDLNMAKGVDADETLTVGFLNDKVEERMDAYLEAYDVVILGDGGFDFVLKLLEEVASRE 965
            N     V    VH+S      ++ R NV+LLGDSLGDL M++GVD D  LT+GFLNDKV ER+++Y +A+DVVILGDG  D V  L+  + S E
Sbjct:  299 NKQDVVVKDSPVHKS------IADRHNVILLGDSLGDLQMSRGVDVDNILTIGFLNDKVAERLESYKQAFDVVILGDGSVDLVYNLISMIISGE 386
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BLAST of mRNA_H-canaliculatus_F_contig13876.3074.1 vs. uniprot
Match: UPI0001FE3700 (5'-nucleotidase n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=UPI0001FE3700)

HSP 1 Score: 92.4 bits (228), Expect = 1.930e-16
Identity = 48/94 (51.06%), Postives = 62/94 (65.96%), Query Frame = 3 
Query:  684 NLVPACVPTCTVHRSGGSGTKMSRRRNVLLLGDSLGDLNMAKGVDADETLTVGFLNDKVEERMDAYLEAYDVVILGDGGFDFVLKLLEEVASRE 965
            N     V    VH+S      ++ R NV+LLGDSLGDL M++GVD D  LT+GFLNDKV ER+++Y +A+DVVILGDG  D V  L+  + S E
Sbjct:  336 NKQDVVVKDSPVHKS------IADRHNVILLGDSLGDLQMSRGVDVDNILTIGFLNDKVAERLESYKQAFDVVILGDGSVDLVYNLISMIISGE 423
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BLAST of mRNA_H-canaliculatus_F_contig13876.3074.1 vs. uniprot
Match: A0A835YMP4_9STRA (5'-nucleotidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMP4_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.590e-15
Identity = 43/67 (64.18%), Postives = 53/67 (79.10%), Query Frame = 3 
Query:  756 RRNVLLLGDSLGDLNMAKGVDADETLTVGFLNDKVEERMDAYLEAYDVVILG-DGGFDFVLKLLEEV 953
            RRNVLLLGDSLGDL MA G++ADE L+VGFLND+ EER+ +YL  YDVVI+G D G  + L L+ E+
Sbjct:  204 RRNVLLLGDSLGDLQMASGLEADEVLSVGFLNDQAEERIGSYLAGYDVVIIGPDAGLQYALDLVREL 270
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BLAST of mRNA_H-canaliculatus_F_contig13876.3074.1 vs. uniprot
Match: A0A485KPR6_9STRA (5'-nucleotidase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KPR6_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 8.870e-13
Identity = 38/67 (56.72%), Postives = 50/67 (74.63%), Query Frame = 3 
Query:  756 RRNVLLLGDSLGDLNMAKGVDADETLTVGFLNDKVEERMDAYLEAYDVVILGDGGFDFVLKLLEEVA 956
            RRNV+LLGDS+GD+NM +G+D  E L VGFLN  ++ERM  YL+ YDVVI+ DG   F  +L++ VA
Sbjct:  258 RRNVILLGDSVGDVNMTEGLDGKEVLRVGFLNTHIDERMAQYLDLYDVVIINDGTLHFAHRLVDLVA 324
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BLAST of mRNA_H-canaliculatus_F_contig13876.3074.1 vs. uniprot
Match: A0A1V5QQ14_9ARCH (5'-nucleotidase n=1 Tax=archaeon ADurb.Bin336 TaxID=1866922 RepID=A0A1V5QQ14_9ARCH)

HSP 1 Score: 79.3 bits (194), Expect = 9.010e-13
Identity = 35/70 (50.00%), Postives = 53/70 (75.71%), Query Frame = 3 
Query:  744 KMSRRRNVLLLGDSLGDLNMAKGVDADETLTVGFLNDKVEERMDAYLEAYDVVILGDGGFDFVLKLLEEV 953
            K+  R+N+LLLGD+L DL M +G+  +E + +GFLN+ +EE ++ Y +AYDVVIL DG  +FV KLL+++
Sbjct:  209 KIKDRKNILLLGDTLDDLQMVEGIKYNEIIQIGFLNNNIEENLEQYKKAYDVVILNDGSMNFVNKLLKQI 278
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BLAST of mRNA_H-canaliculatus_F_contig13876.3074.1 vs. uniprot
Match: W7TPE8_9STRA (5'-nucleotidase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPE8_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 1.030e-12
Identity = 35/71 (49.30%), Postives = 55/71 (77.46%), Query Frame = 3 
Query:  753 RRRNVLLLGDSLGDLNMAKGVDADETLTVGFLNDKVEERMDAYLEAYDVVILGDGGFDFVLKLLEEVASRE 965
            +R++ +L+GDSLGDL+M+ G++ +E + VG LND+VEER+D Y + +DVV+LGDG   +++ LL E+ S E
Sbjct:  299 KRKHAILVGDSLGDLHMSDGLELEEIIKVGLLNDRVEERLDEYSQKFDVVLLGDGDLTYIIGLLRELISDE 369
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BLAST of mRNA_H-canaliculatus_F_contig13876.3074.1 vs. uniprot
Match: A0A3R7A1J4_9STRA (5'-nucleotidase n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7A1J4_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.090e-12
Identity = 38/70 (54.29%), Postives = 50/70 (71.43%), Query Frame = 3 
Query:  756 RRNVLLLGDSLGDLNMAKGVDADETLTVGFLNDKVEERMDAYLEAYDVVILGDGGFDFVLKLLEEVASRE 965
            RRNV+LLGDS+GD+NM +G+D  E L +GFLN  +EERM  YL  YDVVI+ DG   F   L+ ++ SR+
Sbjct:   60 RRNVVLLGDSVGDVNMTQGLDGKEVLRIGFLNAHIEERMAEYLTLYDVVIVNDGTLHFA-HLVVDLISRQ 128
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BLAST of mRNA_H-canaliculatus_F_contig13876.3074.1 vs. uniprot
Match: A0A2R6WK56_MARPO (5'-nucleotidase n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WK56_MARPO)

HSP 1 Score: 78.6 bits (192), Expect = 1.860e-12
Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 3 
Query:  726 SGGSGTKMSR-RRNVLLLGDSLGDLNMAKGVDADETLTVGFLNDKVEERMDAYLEAYDVVILGDGGFDFVLKLLEEVAS 959
            S G+G+   + R+NV+LLGD LGDL M+ GV  D  ++VGFLN+ VE  +D Y  A+D+V+L DG  D V++L++E+ S
Sbjct:  210 SNGNGSSFIKGRKNVILLGDHLGDLGMSDGVAYDNRISVGFLNENVENWLDTYRRAFDIVVLNDGTLDCVVELIQELRS 288
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13876.3074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDF4_ECTSI2.860e-2679.455'-nucleotidase n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A6H5JI70_9PHAE3.170e-2682.195'-nucleotidase n=1 Tax=Ectocarpus sp. CCAP 1310/3... [more]
A0A0D2U9Z3_CAPO31.430e-1651.065'-nucleotidase n=1 Tax=Capsaspora owczarzaki (str... [more]
UPI0001FE37001.930e-1651.065'-nucleotidase n=1 Tax=Capsaspora owczarzaki (str... [more]
A0A835YMP4_9STRA2.590e-1564.185'-nucleotidase n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A485KPR6_9STRA8.870e-1356.725'-nucleotidase n=1 Tax=Aphanomyces stellatus TaxI... [more]
A0A1V5QQ14_9ARCH9.010e-1350.005'-nucleotidase n=1 Tax=archaeon ADurb.Bin336 TaxI... [more]
W7TPE8_9STRA1.030e-1249.305'-nucleotidase n=2 Tax=Monodopsidaceae TaxID=4250... [more]
A0A3R7A1J4_9STRA1.090e-1254.295'-nucleotidase n=1 Tax=Aphanomyces astaci TaxID=1... [more]
A0A2R6WK56_MARPO1.860e-1248.105'-nucleotidase n=1 Tax=Marchantia polymorpha TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13876contigH-canaliculatus_F_contig13876:94..2286 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.8
Seed ortholog evalue5.4e-25
Seed eggNOG ortholog2880.D8LDF4
KEGG rclassRC00017
KEGG koko:K01081
KEGG ReactionR00183,R00511,R00963,R01126,R01227,R01569,R01664,R01968,R02088,R02102,R02323,R02719,R03346
KEGG Pathwayko00230,ko00240,ko00760,ko01100,ko01110,map00230,map00240,map00760,map01100,map01110
EggNOG free text desc.Belongs to the pyrimidine 5'-nucleotidase family
EggNOG OGsKOG3128@1,KOG3128@2759
EC3.1.3.5
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHAD-like domain
Ec32 orthologEc-15_000820.2
Exons2
Model size1555
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13876.3074.1prot_H-canaliculatus_F_contig13876.3074.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13876 840..1699 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929128.6922884-UTR-H-canaliculatus_F_contig13876:93..8391622929128.6922884-UTR-H-canaliculatus_F_contig13876:93..839Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13876 94..839 +
1696845689.2315927-UTR-H-canaliculatus_F_contig13876:93..8391696845689.2315927-UTR-H-canaliculatus_F_contig13876:93..839Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13876 94..839 +
1622929128.7451608-UTR-H-canaliculatus_F_contig13876:1699..22861622929128.7451608-UTR-H-canaliculatus_F_contig13876:1699..2286Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13876 1700..2286 +
1696845689.2676585-UTR-H-canaliculatus_F_contig13876:1699..22861696845689.2676585-UTR-H-canaliculatus_F_contig13876:1699..2286Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13876 1700..2286 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929128.7130053-CDS-H-canaliculatus_F_contig13876:839..9501622929128.7130053-CDS-H-canaliculatus_F_contig13876:839..950Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13876 840..950 +
1696845689.2461054-CDS-H-canaliculatus_F_contig13876:839..9501696845689.2461054-CDS-H-canaliculatus_F_contig13876:839..950Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13876 840..950 +
1622929128.7286072-CDS-H-canaliculatus_F_contig13876:1588..16991622929128.7286072-CDS-H-canaliculatus_F_contig13876:1588..1699Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13876 1589..1699 +
1696845689.2575722-CDS-H-canaliculatus_F_contig13876:1588..16991696845689.2575722-CDS-H-canaliculatus_F_contig13876:1588..1699Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13876 1589..1699 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13876.3074.1

>prot_H-canaliculatus_F_contig13876.3074.1 ID=prot_H-canaliculatus_F_contig13876.3074.1|Name=mRNA_H-canaliculatus_F_contig13876.3074.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=74bp
MSRRRNVLLLGDSLGDLNMAKGVDADETLTVGFLNDKVEERMDAYLEAYD
VVILGDGGFDFVLKLLEEVASRE*
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mRNA from alignment at H-canaliculatus_F_contig13876:94..2286+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13876.3074.1 ID=mRNA_H-canaliculatus_F_contig13876.3074.1|Name=mRNA_H-canaliculatus_F_contig13876.3074.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2193bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13876:94..2286+ (Hapterophycus canaliculatus Oshoro5f female)
CGACCTCCCGTTGTTTGGTCTACGTTTGCTTTAATCTTCGGGCGTGGTCG
ACTGAAAATGGTGCCCTCGACGCGCTTTGACGTGCTCCTCGTGCATGGGC
GCGTCGATCGAGAAAGTATACTCTCAGTTGTAATCCATCGCGAATTCGTT
TCTGCTTAGTGTTGTGACCATTTCTCGGGCCTGAACGAAAATAGCCGGCC
TGGAAGAAGGAGAGCCCTCTTCGATGGCACTCGGGGGGATACGTTGAATT
ATCTCAAAGTGGGAGCTCAATTGTGTGGCGCCCACCTGGCCTCCTTCAGC
ATCACGTTTTTCCGGTGGGATCGCGTTGCCGGGAAGTAGCAGGCCAATTT
GATCACATCAGGTCGGACCGATTTCGGTCTTTCCGATCTTCGTTTGCGTT
TCGGTGTTCGACTAAAAGTGTTCGACTATAACGTGGCGAGTGTATCACGC
CGCCTCGAGTGCCTCTGTACACTCTCTTGAATATCTTAAGTGTGTTTCCT
CCATTTTCGTGCTGTGTTACGCACCCGGAAGTAGGACAATCGTGTTTTTT
CGTCTTTCTTCCTCGCTCACCCCTCCCAAGATACTGAAACCCACGTACAT
GCTCCGGAGTGCGCGAACAACTCGATATTTCTTCCCCGTTCCCGCCCATG
CATCCATCCGCGCATGCGAGCGAATGACAATCAAACCTCGTGCCCGCGTG
TGTCCCCACGTGTACCGTCCACCGCTCGGGTGGGTCGGGCACAAAGATGA
GCCGCAGGCGGAACGTTCTGCTCTTGGGGGATAGCCTCGGAGATCTCAAC
ATGGCCAAGGGCGTTGACGCGGACGAAACTCTGACCGTCGGATTCCTCAA
CGACAAGGTGTGTCCGTCCGAAACTGATGTCCTCGTCTATGCCACGCCTT
GCGAGTTTTTTTGGTGGGCTTCGCTGACGAGGCGGAGGGGGTACCGTCCG
TTCCGTTTCTACACAGAGACACTCCTTCCATTGGAGTGCTCTTTTTGCTG
CGCTTACAGTGATAATTTCTTACCTGCCGCGTCATGTTCCCTACAAAAAT
CTTCGTCGCGATGTAGGAAGCGTGGTAGGGCAAAAGCTGTGCCGGTTGCT
GCACGTCTGCTTCATGGCGTGCCTTAGTGGGAGGACTTTGTCTGGGTCTC
CGATTCCTGATCCCCTTGTATCACAGGCACCAAATTTTGAAGCGGGTTTT
AGGCTGCGACCGCTGTAAGATTTGCATTGGACGCCTTTCTTCTCAAACGA
CGAGTTTGTTGTTTCAGCGCGGAGCACTTCTCCTCTCGTTCTCTGTCTTG
GGCAGCCTAGGAAAAAAACTCCTGTAGGCGTTGAACCGATTTTCCCACCA
TCTGTGTAGAAAAGTTGCGACGTGAAGGAAGATTTCATACCAAAAAGCAT
CCGAATGAAATTTTCAACGAAACACTGCTGAGAGTACAGTCATGTTCTGT
TTCGCGCTCAAATGATGGCAACACATGTTTCTTTGCACTGGACAGGTCGA
GGAACGGATGGACGCCTACCTTGAGGCGTACGACGTCGTTATTCTCGGCG
ATGGCGGCTTCGATTTCGTTCTTAAGCTTCTGGAAGAGGTGGCCTCCCGC
GAATAGAGTTCCTTTCTTGCTGAAGTTCCATAGGGATGTAGCCGAACAGA
CAGAGGGCGTTTTCTCGCTCGTCTAGTTCGATGGGTCCTTTCCATCCTTA
ACAGGAAACGCTAATGAATGTCGAGTCTTGGAGGCATGTTCGGTTATTGT
GGGCGGGCTGTTGTGCGGTTGAGATTTGGTAGACGAGCTTCAAGAAGAGG
TTGCTTATTTCGAAGGGGCGGCTGCCTCCTGCGTATTTTGAACGGACGAT
CTTGCAGCCTTGACTGCTTGATCCATAGGTCTGGCCGTTTCGTCGACTTC
TCGGCGATCGACTGATTTGTTGTTGTTTACTTCGCGATCTTCGTTCTCGA
TTTTCTTCCCAGAAATATTTGCCTTTGGGTGTATCATTTCGACTCACCCG
CGAAGAGCAAAGGAAGTGGTCCGACTCCGTTTCCCCCTTTGATCGGAGAA
GGTGCACTGACTTCAATTTGACCATGCAAGAGAGATAGCTAGTTCAACTC
CGTTTTGATTGGCGTGATAAATGTTTTAGCCCCAGCAGGTGAACGACACC
CTTTGCTGCAATCATGTATGTCTGAAACTCTCTGGAATACAAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13876:94..2286+

>mRNA_H-canaliculatus_F_contig13876.3074.1 ID=mRNA_H-canaliculatus_F_contig13876.3074.1|Name=mRNA_H-canaliculatus_F_contig13876.3074.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=444bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13876:94..2286+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGCCGCAGGCGGAACGTTCTGCTCTTGGGGGATAGCCTCGGAGATCT
CAACATGGCCAAGGGCGTTGACGCGGACGAAACTCTGACCGTCGGATTCC
TCAACGACAAGATGAGCCGCAGGCGGAACGTTCTGCTCTTGGGGGATAGC
CTCGGAGATCTCAACATGGCCAAGGGCGTTGACGCGGACGAAACTCTGAC
CGTCGGATTCCTCAACGACAAGGTCGAGGAACGGATGGACGCCTACCTTG
AGGCGTACGACGTCGTTATTCTCGGCGATGGCGGCTTCGATTTCGTTCTT
AAGCTTCTGGAAGAGGTGGCCTCCCGCGAATAGGTCGAGGAACGGATGGA
CGCCTACCTTGAGGCGTACGACGTCGTTATTCTCGGCGATGGCGGCTTCG
ATTTCGTTCTTAAGCTTCTGGAAGAGGTGGCCTCCCGCGAATAG
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