mRNA_H-canaliculatus_F_contig1386.3067.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1386.3067.1
Unique NamemRNA_H-canaliculatus_F_contig1386.3067.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1386.3067.1 vs. uniprot
Match: A0A6H5JSD0_9PHAE (Peptidylprolyl isomerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSD0_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 1.890e-66
Identity = 96/113 (84.96%), Postives = 105/113 (92.92%), Query Frame = 1 
Query:    1 GYEKEVLTAAPAGARKPKKGEKVTVHCTGYGKNRDLSQKFWSTKDAGEVPFSYNIGFGNVIKGWDEGVMDMGIGEVAKLTCSPEYAYGAAGFESWGIMPNSVLCFEIEVLSIE 339
            G  +EV+T APAGA+KPKKG+KVTVHCTGYGKNRDL QKFWSTKDAG+VPFSY IG G+VIKGWDEGVMDM +GEVAKLTCSPEY YGA+GFESWGIMPNSVLCFEIE+LSIE
Sbjct:   98 GVVREVITPAPAGAQKPKKGQKVTVHCTGYGKNRDLRQKFWSTKDAGQVPFSYYIGLGSVIKGWDEGVMDMAVGEVAKLTCSPEYGYGASGFESWGIMPNSVLCFEIEILSIE 210
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BLAST of mRNA_H-canaliculatus_F_contig1386.3067.1 vs. uniprot
Match: A0A6H5JKH1_9PHAE (Peptidylprolyl isomerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH1_9PHAE)

HSP 1 Score: 194 bits (494), Expect = 1.800e-62
Identity = 87/113 (76.99%), Postives = 103/113 (91.15%), Query Frame = 1 
Query:    1 GYEKEVLTAAPAGARKPKKGEKVTVHCTGYGKNRDLSQKFWSTKDAGEVPFSYNIGFGNVIKGWDEGVMDMGIGEVAKLTCSPEYAYGAAGFESWGIMPNSVLCFEIEVLSIE 339
            G++KEVL  APAGA+KP+KG+KVTVHCTGYGKNRDLS+KFWST D G+VPFSY+IG G+VIKGWD+GVMDMG+GE A+LTC+P+YAYG  GF +WGIMP+S LCFEIEVLSIE
Sbjct:    2 GFQKEVLKPAPAGAQKPQKGQKVTVHCTGYGKNRDLSEKFWSTTDPGQVPFSYHIGLGSVIKGWDQGVMDMGVGERARLTCTPDYAYGEGGFPAWGIMPDSTLCFEIEVLSIE 114
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BLAST of mRNA_H-canaliculatus_F_contig1386.3067.1 vs. uniprot
Match: A0A2K1L9Z1_PHYPA (Peptidylprolyl isomerase n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L9Z1_PHYPA)

HSP 1 Score: 169 bits (427), Expect = 2.770e-52
Identity = 76/113 (67.26%), Postives = 91/113 (80.53%), Query Frame = 1 
Query:    1 GYEKEVLTAAPAGARKPKKGEKVTVHCTGYGKNRDLSQKFWSTKDAGEVPFSYNIGFGNVIKGWDEGVMDMGIGEVAKLTCSPEYAYGAAGFESWGIMPNSVLCFEIEVLSIE 339
            GYEKE++   P    KP +G+ VTVHCTGYGKNRDL++KFWSTKD G+ PF + +G G VIKGWDEGVM M IGE+A+L CSP+YAYG+ GF +WGIMPNSVL FEIEVLS +
Sbjct:    2 GYEKEIIR--PGNGVKPNRGQTVTVHCTGYGKNRDLNEKFWSTKDPGQKPFQFELGMGRVIKGWDEGVMSMSIGEIARLKCSPDYAYGSGGFPAWGIMPNSVLVFEIEVLSAQ 112
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BLAST of mRNA_H-canaliculatus_F_contig1386.3067.1 vs. uniprot
Match: A0A0F7H0Y2_ACOAM (Peptidylprolyl isomerase n=1 Tax=Acorus americanus TaxID=263995 RepID=A0A0F7H0Y2_ACOAM)

HSP 1 Score: 168 bits (425), Expect = 5.590e-52
Identity = 78/113 (69.03%), Postives = 93/113 (82.30%), Query Frame = 1 
Query:    1 GYEKEVLTAAPAGARKPKKGEKVTVHCTGYGKNRDLSQKFWSTKDAGEVPFSYNIGFGNVIKGWDEGVMDMGIGEVAKLTCSPEYAYGAAGFESWGIMPNSVLCFEIEVLSIE 339
            G EK+VL A   G  KP  G+ VTVHCTG+GKNRDL+QKFWSTKD G+ PF++ IG GNVIKGWDEGV+DM +GEVA+L CSP+YAYG+ GF +WGI PNSVL FEIEVLS++
Sbjct:    2 GVEKQVLRAG--GGPKPVPGQTVTVHCTGFGKNRDLNQKFWSTKDPGQKPFTFKIGMGNVIKGWDEGVLDMQLGEVARLQCSPDYAYGSGGFPAWGIQPNSVLVFEIEVLSVQ 112
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BLAST of mRNA_H-canaliculatus_F_contig1386.3067.1 vs. uniprot
Match: A0A5J9UY98_9POAL (Peptidylprolyl isomerase n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9UY98_9POAL)

HSP 1 Score: 171 bits (432), Expect = 6.710e-52
Identity = 79/113 (69.91%), Postives = 95/113 (84.07%), Query Frame = 1 
Query:    1 GYEKEVLTAAPAGARKPKKGEKVTVHCTGYGKNRDLSQKFWSTKDAGEVPFSYNIGFGNVIKGWDEGVMDMGIGEVAKLTCSPEYAYGAAGFESWGIMPNSVLCFEIEVLSIE 339
            G+EK++L A      KP KG+KVTVHCTGYGK+RDLS+KFWSTKD G+ PFS+NIG G+VIKGWDEGVM M +GEVA++ CSP+YAYGA+GF +WGI PNSVL FEIEVLS +
Sbjct:   86 GFEKQILRAGTG--PKPVKGQKVTVHCTGYGKDRDLSKKFWSTKDPGQQPFSFNIGLGSVIKGWDEGVMSMQVGEVARIQCSPDYAYGASGFPAWGIQPNSVLVFEIEVLSAQ 196
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BLAST of mRNA_H-canaliculatus_F_contig1386.3067.1 vs. uniprot
Match: K3YWW3_SETIT (Peptidylprolyl isomerase n=28 Tax=Poaceae TaxID=4479 RepID=K3YWW3_SETIT)

HSP 1 Score: 167 bits (422), Expect = 1.600e-51
Identity = 77/113 (68.14%), Postives = 93/113 (82.30%), Query Frame = 1 
Query:    1 GYEKEVLTAAPAGARKPKKGEKVTVHCTGYGKNRDLSQKFWSTKDAGEVPFSYNIGFGNVIKGWDEGVMDMGIGEVAKLTCSPEYAYGAAGFESWGIMPNSVLCFEIEVLSIE 339
            G+EKE+L        KP KG+KVTVHCTGYGK+RDLS+KFWSTKD G+ PFS+NIG G+VIKGWDEGVM M +GEVA++ C+P+YAYGA GF +WGI PNSVL FEIEV+S +
Sbjct:    2 GFEKEILRDGTG--PKPTKGQKVTVHCTGYGKDRDLSKKFWSTKDPGQQPFSFNIGLGSVIKGWDEGVMTMQVGEVARIQCTPDYAYGANGFSAWGIQPNSVLVFEIEVISAQ 112
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BLAST of mRNA_H-canaliculatus_F_contig1386.3067.1 vs. uniprot
Match: A0A803MCC7_CHEQI (Peptidylprolyl isomerase n=3 Tax=Chenopodiaceae TaxID=1804623 RepID=A0A803MCC7_CHEQI)

HSP 1 Score: 167 bits (422), Expect = 1.600e-51
Identity = 78/113 (69.03%), Postives = 91/113 (80.53%), Query Frame = 1 
Query:    1 GYEKEVLTAAPAGARKPKKGEKVTVHCTGYGKNRDLSQKFWSTKDAGEVPFSYNIGFGNVIKGWDEGVMDMGIGEVAKLTCSPEYAYGAAGFESWGIMPNSVLCFEIEVLSIE 339
            G EKE+L   P    KP  G+KVTVHCTGYGK+RDLSQKFWSTKD G+  FS+N+G GNVIKGWDEGV+ M +GEVA+LTC+P+YAYGA GF +WGI PNS L FEIEVLS +
Sbjct:    2 GIEKEILR--PGSGPKPVSGQKVTVHCTGYGKDRDLSQKFWSTKDPGQQTFSFNVGKGNVIKGWDEGVLGMQVGEVARLTCTPDYAYGAGGFPAWGIQPNSTLVFEIEVLSAQ 112
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BLAST of mRNA_H-canaliculatus_F_contig1386.3067.1 vs. uniprot
Match: A0A7C9D820_OPUST (Peptidylprolyl isomerase n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9D820_OPUST)

HSP 1 Score: 167 bits (422), Expect = 1.600e-51
Identity = 77/113 (68.14%), Postives = 92/113 (81.42%), Query Frame = 1 
Query:    1 GYEKEVLTAAPAGARKPKKGEKVTVHCTGYGKNRDLSQKFWSTKDAGEVPFSYNIGFGNVIKGWDEGVMDMGIGEVAKLTCSPEYAYGAAGFESWGIMPNSVLCFEIEVLSIE 339
            G EKE++ A      KP +G+KVTVHCTG+GKN DLSQKFWSTKD G+ PFS+N+G G VIKGWDEGV+ M +GEVA+LTCSP+YAYG++GF +WGI PNSVL FEIEVL  E
Sbjct:    2 GVEKEIIRAGTG--PKPVRGQKVTVHCTGFGKNGDLSQKFWSTKDPGQEPFSFNVGLGKVIKGWDEGVLGMQVGEVARLTCSPDYAYGSSGFAAWGIQPNSVLVFEIEVLKAE 112
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BLAST of mRNA_H-canaliculatus_F_contig1386.3067.1 vs. uniprot
Match: A0A3B6PP75_WHEAT (Peptidylprolyl isomerase n=4 Tax=Triticinae TaxID=1648030 RepID=A0A3B6PP75_WHEAT)

HSP 1 Score: 168 bits (425), Expect = 1.690e-51
Identity = 79/111 (71.17%), Postives = 92/111 (82.88%), Query Frame = 1 
Query:    1 GYEKEVLTAAPAGARKPKKGEKVTVHCTGYGKNRDLSQKFWSTKDAGEVPFSYNIGFGNVIKGWDEGVMDMGIGEVAKLTCSPEYAYGAAGFESWGIMPNSVLCFEIEVLS 333
            G+EKE+L A      KP KG+KVTVHCTGYGK+ DLS+KFWSTKD G+ PFS+NIG G+VIKGWDEGVM M +GEVA+LTC+P+YAYG  GF +WGI PNSVL FEIEVLS
Sbjct:   37 GFEKEILKAGTG--PKPVKGQKVTVHCTGYGKDGDLSKKFWSTKDPGQQPFSFNIGLGSVIKGWDEGVMGMQLGEVARLTCTPDYAYGTGGFPAWGIQPNSVLIFEIEVLS 145
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BLAST of mRNA_H-canaliculatus_F_contig1386.3067.1 vs. uniprot
Match: A0A0K9P660_ZOSMR (Peptidylprolyl isomerase n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9P660_ZOSMR)

HSP 1 Score: 166 bits (420), Expect = 3.230e-51
Identity = 75/113 (66.37%), Postives = 92/113 (81.42%), Query Frame = 1 
Query:    1 GYEKEVLTAAPAGARKPKKGEKVTVHCTGYGKNRDLSQKFWSTKDAGEVPFSYNIGFGNVIKGWDEGVMDMGIGEVAKLTCSPEYAYGAAGFESWGIMPNSVLCFEIEVLSIE 339
            G  K+++ A      KP KG+ VTVHCTG+GKNRDLSQKFWSTKD G+ PF++N+G G VIKGWDEGV+DM IGE+A+L C+P+YAYGA+GF +WGI PNS L FEIEVLSI+
Sbjct:    2 GVTKQIIRAG--NGPKPSKGQSVTVHCTGFGKNRDLSQKFWSTKDPGQQPFTFNVGMGTVIKGWDEGVLDMNIGEIARLECTPDYAYGASGFTAWGIQPNSPLVFEIEVLSIQ 112
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1386.3067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSD0_9PHAE1.890e-6684.96Peptidylprolyl isomerase n=1 Tax=Ectocarpus sp. CC... [more]
A0A6H5JKH1_9PHAE1.800e-6276.99Peptidylprolyl isomerase n=1 Tax=Ectocarpus sp. CC... [more]
A0A2K1L9Z1_PHYPA2.770e-5267.26Peptidylprolyl isomerase n=2 Tax=Physcomitrium pat... [more]
A0A0F7H0Y2_ACOAM5.590e-5269.03Peptidylprolyl isomerase n=1 Tax=Acorus americanus... [more]
A0A5J9UY98_9POAL6.710e-5269.91Peptidylprolyl isomerase n=1 Tax=Eragrostis curvul... [more]
K3YWW3_SETIT1.600e-5168.14Peptidylprolyl isomerase n=28 Tax=Poaceae TaxID=44... [more]
A0A803MCC7_CHEQI1.600e-5169.03Peptidylprolyl isomerase n=3 Tax=Chenopodiaceae Ta... [more]
A0A7C9D820_OPUST1.600e-5168.14Peptidylprolyl isomerase n=1 Tax=Opuntia streptaca... [more]
A0A3B6PP75_WHEAT1.690e-5171.17Peptidylprolyl isomerase n=4 Tax=Triticinae TaxID=... [more]
A0A0K9P660_ZOSMR3.230e-5166.37Peptidylprolyl isomerase n=1 Tax=Zostera marina Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1386contigH-canaliculatus_F_contig1386:26391..26732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score172.9
Seed ortholog evalue8.3e-41
Seed eggNOG ortholog38727.Pavir.J00540.1.p
Preferred nameFKBP12
KEGG koko:K01802
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006457,GO:0006464,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009987,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0061077,GO:0071704,GO:0097159,GO:0140096,GO:1901363,GO:1901564
EggNOG free text desc.Peptidyl-prolyl cis-trans isomerase
EggNOG OGs37VEG@33090,3GINI@35493,3II48@38820,3KZZV@4447,COG0545@1,KOG0544@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size342
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929128.0904405-CDS-H-canaliculatus_F_contig1386:26390..267321622929128.0904405-CDS-H-canaliculatus_F_contig1386:26390..26732Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1386 26391..26732 -
1696845688.9443302-CDS-H-canaliculatus_F_contig1386:26390..267321696845688.9443302-CDS-H-canaliculatus_F_contig1386:26390..26732Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1386 26391..26732 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1386.3067.1prot_H-canaliculatus_F_contig1386.3067.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1386 26391..26732 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1386.3067.1

>prot_H-canaliculatus_F_contig1386.3067.1 ID=prot_H-canaliculatus_F_contig1386.3067.1|Name=mRNA_H-canaliculatus_F_contig1386.3067.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=114bp
GYEKEVLTAAPAGARKPKKGEKVTVHCTGYGKNRDLSQKFWSTKDAGEVP
FSYNIGFGNVIKGWDEGVMDMGIGEVAKLTCSPEYAYGAAGFESWGIMPN
SVLCFEIEVLSIE*
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mRNA from alignment at H-canaliculatus_F_contig1386:26391..26732-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1386.3067.1 ID=mRNA_H-canaliculatus_F_contig1386.3067.1|Name=mRNA_H-canaliculatus_F_contig1386.3067.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=342bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1386:26391..26732- (Hapterophycus canaliculatus Oshoro5f female)
GGTTATGAGAAAGAAGTGCTGACGGCCGCCCCTGCCGGAGCTCGGAAGCC
GAAAAAGGGTGAGAAGGTGACGGTGCACTGCACCGGCTACGGCAAGAACA
GGGACCTGTCTCAGAAGTTCTGGAGCACGAAGGATGCGGGTGAGGTGCCG
TTCAGCTACAACATCGGGTTCGGCAACGTGATAAAGGGGTGGGACGAGGG
TGTTATGGACATGGGCATCGGCGAGGTTGCAAAGCTCACGTGCTCGCCGG
AATACGCCTACGGTGCCGCGGGCTTCGAGTCGTGGGGCATCATGCCCAAC
TCGGTCCTCTGCTTCGAGATTGAGGTCCTCTCGATCGAGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1386:26391..26732-

>mRNA_H-canaliculatus_F_contig1386.3067.1 ID=mRNA_H-canaliculatus_F_contig1386.3067.1|Name=mRNA_H-canaliculatus_F_contig1386.3067.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=684bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1386:26391..26732- (Hapterophycus canaliculatus Oshoro5f female)
GGTTATGAGAAAGAAGTGCTGACGGCCGCCCCTGCCGGAGCTCGGAAGCC
GAAAAAGGGTGAGAAGGTGACGGTGCACTGCACCGGCTACGGCAAGAACA
GGGACCTGTCTCAGAAGTTCTGGAGCACGAAGGATGCGGGTGAGGTGCCG
TTCAGCTACAACATCGGGTTCGGCAACGTGATAAAGGGGTGGGACGAGGG
TGTTATGGACATGGGCATCGGCGAGGTTGCAAAGCTCACGTGCTCGCCGG
AATACGCCTACGGTGCCGCGGGCTTCGAGTCGTGGGGCATCATGCCCAAC
TCGGTCCTCTGCTTCGAGATTGAGGTCCTCTCGATCGAGTAGGGTTATGA
GAAAGAAGTGCTGACGGCCGCCCCTGCCGGAGCTCGGAAGCCGAAAAAGG
GTGAGAAGGTGACGGTGCACTGCACCGGCTACGGCAAGAACAGGGACCTG
TCTCAGAAGTTCTGGAGCACGAAGGATGCGGGTGAGGTGCCGTTCAGCTA
CAACATCGGGTTCGGCAACGTGATAAAGGGGTGGGACGAGGGTGTTATGG
ACATGGGCATCGGCGAGGTTGCAAAGCTCACGTGCTCGCCGGAATACGCC
TACGGTGCCGCGGGCTTCGAGTCGTGGGGCATCATGCCCAACTCGGTCCT
CTGCTTCGAGATTGAGGTCCTCTCGATCGAGTAG
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