mRNA_H-canaliculatus_F_contig1386.3063.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1386.3063.1
Unique NamemRNA_H-canaliculatus_F_contig1386.3063.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1386.3063.1 vs. uniprot
Match: D7FZ56_ECTSI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ56_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 4.840e-46
Identity = 72/78 (92.31%), Postives = 76/78 (97.44%), Query Frame = 1 
Query:    1 MGGDH-GMEGSATEEEMVASKMPLAFRDSCAHLLLPLNKCRRSTMYLPWKCSHERHIYEKCQYLDFKERKSMMKESKE 231
            MGGDH GMEG ATEEEMVA+KMP+AFRDSCAHLLLPLNKCRRSTMYLPW+CSHERHIYEKCQYLDFKERK+MMKESKE
Sbjct:    1 MGGDHDGMEGKATEEEMVAAKMPMAFRDSCAHLLLPLNKCRRSTMYLPWQCSHERHIYEKCQYLDFKERKAMMKESKE 78
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BLAST of mRNA_H-canaliculatus_F_contig1386.3063.1 vs. uniprot
Match: A0A0G4MZR7_9PEZI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=7 Tax=Plectosphaerellaceae TaxID=1033978 RepID=A0A0G4MZR7_9PEZI)

HSP 1 Score: 103 bits (256), Expect = 3.330e-27
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:    1 MGGDHGMEGSATEEEMVASKMPLAFRDSCAHLLLPLNKCRRSTMYLPWKCSHERHIYEKCQYLDFKERKSMMKE 222
            MG D+  +G AT EEM  +++PLA+RDSCAHLL+PLN+CR  T YLPWKCS ERH YEKCQY +FK+R + M E
Sbjct:    1 MGSDNAPKGPATREEMREARLPLAYRDSCAHLLIPLNRCRTETWYLPWKCSDERHGYEKCQYEEFKKRVAKMDE 74
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BLAST of mRNA_H-canaliculatus_F_contig1386.3063.1 vs. uniprot
Match: A0A0G4N0K7_9PEZI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=2 Tax=Verticillium longisporum TaxID=100787 RepID=A0A0G4N0K7_9PEZI)

HSP 1 Score: 102 bits (254), Expect = 6.710e-27
Identity = 47/74 (63.51%), Postives = 57/74 (77.03%), Query Frame = 1 
Query:    1 MGGDHGMEGSATEEEMVASKMPLAFRDSCAHLLLPLNKCRRSTMYLPWKCSHERHIYEKCQYLDFKERKSMMKE 222
            MG D+   G AT EEM  +++PLA+RDSCAHLL+PLN+CR  T YLPWKCS ERH YEKCQY +FK+R + M E
Sbjct:    1 MGSDNAPTGPATREEMREARLPLAYRDSCAHLLIPLNRCRTETWYLPWKCSDERHGYEKCQYEEFKKRVAKMDE 74
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BLAST of mRNA_H-canaliculatus_F_contig1386.3063.1 vs. uniprot
Match: I1S5X9_GIBZE (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=10 Tax=Fusarium TaxID=5506 RepID=I1S5X9_GIBZE)

HSP 1 Score: 102 bits (254), Expect = 6.900e-27
Identity = 46/67 (68.66%), Postives = 55/67 (82.09%), Query Frame = 1 
Query:   31 ATEEEMVASKMPLAFRDSCAHLLLPLNKCRRSTMYLPWKCSHERHIYEKCQYLDFKERKSMMKESKE 231
            AT EEM  +K+PLA+RDSCAHLL+PLNKCRR T Y PWKCS ERH YEKCQY++FK+R + M E +E
Sbjct:   12 ATREEMRDAKLPLAYRDSCAHLLIPLNKCRRDTWYAPWKCSDERHSYEKCQYVEFKKRVAKMDELRE 78
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BLAST of mRNA_H-canaliculatus_F_contig1386.3063.1 vs. uniprot
Match: G9MJU7_HYPVG (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=6 Tax=Hypocreales TaxID=5125 RepID=G9MJU7_HYPVG)

HSP 1 Score: 102 bits (254), Expect = 6.900e-27
Identity = 49/78 (62.82%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:    1 MGGDHGMEG-SATEEEMVASKMPLAFRDSCAHLLLPLNKCRRSTMYLPWKCSHERHIYEKCQYLDFKERKSMMKESKE 231
            M  D   EG  AT EEM  +++PLA+RDSCAHLL+PLNKCRR T Y PWKCS ERH YEKCQY++FK+R + M E +E
Sbjct:    1 MASDAATEGRQATREEMRDARLPLAYRDSCAHLLIPLNKCRRETWYAPWKCSDERHSYEKCQYVEFKKRVAKMNELRE 78
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1386.3063.1 vs. uniprot
Match: A0A0W7VSI5_9HYPO (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=6 Tax=Trichoderma TaxID=5543 RepID=A0A0W7VSI5_9HYPO)

HSP 1 Score: 101 bits (252), Expect = 1.390e-26
Identity = 45/67 (67.16%), Postives = 55/67 (82.09%), Query Frame = 1 
Query:   31 ATEEEMVASKMPLAFRDSCAHLLLPLNKCRRSTMYLPWKCSHERHIYEKCQYLDFKERKSMMKESKE 231
            AT EEM  +K+PLA+RDSCAHLL+PLNKCRR T Y PWKC+ ERH YEKCQY++FK+R + M E +E
Sbjct:   12 ATREEMRDAKLPLAYRDSCAHLLIPLNKCRRETWYAPWKCTDERHSYEKCQYVEFKKRVAKMNELRE 78
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1386.3063.1 vs. uniprot
Match: A0A420YNW9_9PEZI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Coniochaeta pulveracea TaxID=177199 RepID=A0A420YNW9_9PEZI)

HSP 1 Score: 101 bits (252), Expect = 1.430e-26
Identity = 45/67 (67.16%), Postives = 55/67 (82.09%), Query Frame = 1 
Query:   31 ATEEEMVASKMPLAFRDSCAHLLLPLNKCRRSTMYLPWKCSHERHIYEKCQYLDFKERKSMMKESKE 231
            AT EEM A+K+PLA+RDSCAHLL+PLN+CR  T YLPWKC  ERH YEKCQY++FK+R + M E +E
Sbjct:   13 ATREEMSAAKVPLAYRDSCAHLLIPLNRCRYETYYLPWKCEDERHTYEKCQYVEFKKRVAKMDELRE 79
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1386.3063.1 vs. uniprot
Match: A0A6A6UGI8_9PEZI (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Microthyrium microscopicum TaxID=703497 RepID=A0A6A6UGI8_9PEZI)

HSP 1 Score: 101 bits (252), Expect = 2.130e-26
Identity = 47/73 (64.38%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:   13 HGME---GSATEEEMVASKMPLAFRDSCAHLLLPLNKCRRSTMYLPWKCSHERHIYEKCQYLDFKERKSMMKE 222
            HG E   G AT EEM A+++PLA+RDSCAHLL+PLNKCR+   YLPWKC HERH YE CQY +FK+R   M E
Sbjct:   15 HGHEDPKGPATREEMTAARLPLAYRDSCAHLLIPLNKCRQKEWYLPWKCDHERHSYEGCQYAEFKKRVKKMDE 87
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1386.3063.1 vs. uniprot
Match: A0A0G2ESH7_9EURO (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=1 Tax=Phaeomoniella chlamydospora TaxID=158046 RepID=A0A0G2ESH7_9EURO)

HSP 1 Score: 100 bits (250), Expect = 3.330e-26
Identity = 45/67 (67.16%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:   31 ATEEEMVASKMPLAFRDSCAHLLLPLNKCRRSTMYLPWKCSHERHIYEKCQYLDFKERKSMMKESKE 231
            AT EEM A+K+PLA+RDSCA+LL+PLNKCRR + YLPWKC +ERH YEKCQY +FK+R + M E +E
Sbjct:   19 ATREEMSAAKLPLAYRDSCANLLIPLNKCRRESYYLPWKCENERHSYEKCQYEEFKQRVAKMDELRE 85
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1386.3063.1 vs. uniprot
Match: E9DYY1_METAQ (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 n=16 Tax=Clavicipitaceae TaxID=34397 RepID=E9DYY1_METAQ)

HSP 1 Score: 100 bits (249), Expect = 3.990e-26
Identity = 44/68 (64.71%), Postives = 56/68 (82.35%), Query Frame = 1 
Query:   28 SATEEEMVASKMPLAFRDSCAHLLLPLNKCRRSTMYLPWKCSHERHIYEKCQYLDFKERKSMMKESKE 231
            +AT EEM  +++PLA+RDSCAHLL+PLNKCR+ T Y PWKCS ERH YEKCQY++FK+R + M E +E
Sbjct:   11 AATREEMRDARLPLAYRDSCAHLLIPLNKCRKETWYAPWKCSDERHSYEKCQYVEFKKRVAKMDELRE 78
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1386.3063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZ56_ECTSI4.840e-4692.31NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A0G4MZR7_9PEZI3.330e-2763.51NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A0G4N0K7_9PEZI6.710e-2763.51NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
I1S5X9_GIBZE6.900e-2768.66NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
G9MJU7_HYPVG6.900e-2762.82NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A0W7VSI5_9HYPO1.390e-2667.16NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A420YNW9_9PEZI1.430e-2667.16NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A6A6UGI8_9PEZI2.130e-2664.38NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
A0A0G2ESH7_9EURO3.330e-2667.16NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]
E9DYY1_METAQ3.990e-2664.71NADH dehydrogenase [ubiquinone] 1 beta subcomplex ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1386contigH-canaliculatus_F_contig1386:4296..5430 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.0
Seed ortholog evalue2.3e-34
Seed eggNOG ortholog2880.D7FZ56
Preferred nameNDUFB7
KEGG koko:K03963,ko:K04498
KEGG TC3.D.1.6
KEGG Pathwayko00190,ko01100,ko04024,ko04066,ko04068,ko04110,ko04310,ko04330,ko04350,ko04520,ko04630,ko04714,ko04720,ko04723,ko04916,ko04919,ko04922,ko04932,ko05010,ko05012,ko05016,ko05152,ko05161,ko05164,ko05165,ko05166,ko05167,ko05168,ko05169,ko05200,ko05203,ko05206,ko05211,ko05215,map00190,map01100,map04024,map04066,map04068,map04110,map04310,map04330,map04350,map04520,map04630,map04714,map04720,map04723,map04916,map04919,map04922,map04932,map05010,map05012,map05016,map05152,map05161,map05164,map05165,map05166,map05167,map05168,map05169,map05200,map05203,map05206,map05211,map05215
KEGG ModuleM00147
GOsGO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005747,GO:0005758,GO:0006091,GO:0006119,GO:0006120,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007005,GO:0008137,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009853,GO:0009987,GO:0010257,GO:0015980,GO:0016020,GO:0016043,GO:0016310,GO:0016491,GO:0016651,GO:0016655,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0030964,GO:0031090,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032981,GO:0032991,GO:0033108,GO:0034622,GO:0034641,GO:0042773,GO:0042775,GO:0043094,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045271,GO:0045333,GO:0046034,GO:0046483,GO:0050136,GO:0055086,GO:0055114,GO:0065003,GO:0070013,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
EggNOG free text desc.NADH dehydrogenase (quinone) activity
EggNOG OGsKOG3468@1,KOG3468@2759
EC2.3.1.48
COG Functional cat.BK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03000,ko03029,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNADH:ubiquinone oxidoreductase, B18 subunit
Ec32 orthologEc-02_006350.1
Exons2
Model size234
Cds size234
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929127.5110328-CDS-H-canaliculatus_F_contig1386:4295..44861622929127.5110328-CDS-H-canaliculatus_F_contig1386:4295..4486Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1386 4296..4486 +
1696845688.7269082-CDS-H-canaliculatus_F_contig1386:4295..44861696845688.7269082-CDS-H-canaliculatus_F_contig1386:4295..4486Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1386 4296..4486 +
1622929127.548738-CDS-H-canaliculatus_F_contig1386:5387..54301622929127.548738-CDS-H-canaliculatus_F_contig1386:5387..5430Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1386 5388..5430 +
1696845688.7409291-CDS-H-canaliculatus_F_contig1386:5387..54301696845688.7409291-CDS-H-canaliculatus_F_contig1386:5387..5430Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1386 5388..5430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1386.3063.1prot_H-canaliculatus_F_contig1386.3063.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1386 4296..5430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1386.3063.1

>prot_H-canaliculatus_F_contig1386.3063.1 ID=prot_H-canaliculatus_F_contig1386.3063.1|Name=mRNA_H-canaliculatus_F_contig1386.3063.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=78bp
MGGDHGMEGSATEEEMVASKMPLAFRDSCAHLLLPLNKCRRSTMYLPWKC
SHERHIYEKCQYLDFKERKSMMKESKE*
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mRNA from alignment at H-canaliculatus_F_contig1386:4296..5430+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1386.3063.1 ID=mRNA_H-canaliculatus_F_contig1386.3063.1|Name=mRNA_H-canaliculatus_F_contig1386.3063.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1135bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1386:4296..5430+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGAGGCGACCACGGTATGGAGGGCAGCGCGACGGAGGAGGAGATGGT
GGCGTCGAAGATGCCCTTGGCGTTCCGAGACTCGTGTGCCCACCTTCTGC
TGCCTCTCAACAAGTGCAGGAGGTCCACCATGTACTTGCCATGGAAGTGC
TCGCACGAGCGCCACATCTACGAGAAGTGCCAGTATCTCGAGTGAGTTCC
GGTTGGACTTCTGTACCTGCGCGGTGCTGGCGCGAAGGTCTCTGTTTGAA
GGCCTCGTCAACTGCTCAACGCCTGGTTGTATTTTGTATTTTGTTGCCCT
CCCTAGCTTTATCTTTTACCCATCTTGTCTGCGCTTGCGACTGTGTTGCA
CGCGTCTCCATTTGCTCGGGATGTTGCAGAAGTGCATAAGGCTCGGCGTA
AGGTTCCCATCGGGGATGCCCTTCTTGATGTGTATCTCGTTCATTGAAAC
ATCCTTGATGCACGTGAAAGTGCGTGTCATCTGAAATTTGAGGCTCAAGC
GGATATTCCACGAGGATTGGGGGCAGGCATGACTGCGACAGCGCCCTGCA
GTTGCAGGAGTCTCCTCTCACAACGATTTGTCATATTTGTGTGGGGGATG
CAGTTACGACGTGCTCCCATTTCGCCTGCCGTCTCCAAGGGCCACGGCAG
GGGACAAGGTGAAGCCGGCTTTAGGCCGGCTGCAATGATGCACGACTTCC
GCGCTTGGCGTGCGGGGTTATGGTGTTGCTTAGAGCTGTCTTACTCCTTC
GTCGAAAGGTGCACGCGTGCTGCAAGGAGCAGGTTGCAGTCACAAGCGTG
TGGAGTCTTGAAAGAGCGCTGCTCCGCAGAAAAGCGTAGGGCTCTTGAAC
TAGGACTAAAGACAAATGTTTTTGAAGCAGCTCCTCTGCAAGCAGCGTTG
GCTGTTTCGGAGACACGCACAATGACCAAGGTACGTTTGAGCTTGCTGGA
ATGGGAATCACAAGATTCAGGCCAAGCTCTTGTCTTCTCTCCTTCAAAAT
GTCATTTTTTTGTAAAGATCCAACCCAGCCCTGCTTTTTGCCTTTTTTTG
CCCCCCCCTCCCCTCCCACACGTTGTTTCCCACCATGTGCAGTTTTAAGG
AAAGGAAGTCCATGATGAAGGAAAGCAAGGAATAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1386:4296..5430+

>mRNA_H-canaliculatus_F_contig1386.3063.1 ID=mRNA_H-canaliculatus_F_contig1386.3063.1|Name=mRNA_H-canaliculatus_F_contig1386.3063.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=468bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1386:4296..5430+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGAGGCGACCACGGTATGGAGGGCAGCGCGACGGAGGAGGAGATGGT
GGCGTCGAAGATGCCCTTGGCGTTCCGAGACTCGTGTGCCCACCTTCTGC
TGCCTCTCAACAAGTGCAGGAGGTCCACCATGTACTTGCCATGGAAGTGC
TCGCACGAGCGCCACATCTACGAGAAGTGCCAGTATCTCGAATGGGAGGC
GACCACGGTATGGAGGGCAGCGCGACGGAGGAGGAGATGGTGGCGTCGAA
GATGCCCTTGGCGTTCCGAGACTCGTGTGCCCACCTTCTGCTGCCTCTCA
ACAAGTGCAGGAGGTCCACCATGTACTTGCCATGGAAGTGCTCGCACGAG
CGCCACATCTACGAGAAGTGCCAGTATCTCGATTTTAAGGAAAGGAAGTC
CATGATGAAGGAAAGCAAGGAATAGTTTTAAGGAAAGGAAGTCCATGATG
AAGGAAAGCAAGGAATAG
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