mRNA_H-canaliculatus_F_contig13859.3062.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13859.3062.1
Unique NamemRNA_H-canaliculatus_F_contig13859.3062.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13859.3062.1 vs. uniprot
Match: A0A6H5K116_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K116_9PHAE)

HSP 1 Score: 171 bits (432), Expect = 9.870e-49
Identity = 92/101 (91.09%), Postives = 97/101 (96.04%), Query Frame = 1 
Query:    1 ADLERKLMSRVHAQDKNRFRAVGLSSTLLMIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVSAGALFLREASANPETQ 303
            A++ER LMSR+HAQDKNRFRAVGLSS L++IWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVV AGALFLREASAN ETQ
Sbjct:  228 AEMERNLMSRMHAQDKNRFRAVGLSSLLILIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVRAGALFLREASANSETQ 328
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BLAST of mRNA_H-canaliculatus_F_contig13859.3062.1 vs. uniprot
Match: A0A835YV69_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV69_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.260e-25
Identity = 53/101 (52.48%), Postives = 77/101 (76.24%), Query Frame = 1 
Query:    1 ADLERKLMSRVHAQDKNRFRAVGLSSTLLMIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVSAGALFLREASANPETQ 303
            +D+E KLM+R+   +K RFR   + + L +IWV + FG EIR +   QTAEVARETLK EA+Q+QTQELA A+V  LLND +V++A ++FL++A+++P+TQ
Sbjct:    3 SDMEAKLMARMRTHNKGRFRTAAIVTVLTVIWVFNTFGKEIRVWMGGQTAEVARETLKHEAIQIQTQELAMAVVNTLLNDPKVLAATSVFLQDAASDPDTQ 103
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BLAST of mRNA_H-canaliculatus_F_contig13859.3062.1 vs. uniprot
Match: A0A7S3UXV6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXV6_HETAK)

HSP 1 Score: 99.8 bits (247), Expect = 9.050e-23
Identity = 51/98 (52.04%), Postives = 69/98 (70.41%), Query Frame = 1 
Query:   10 ERKLMSRVHAQDKNRFRAVGLSSTLLMIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVSAGALFLREASANPETQ 303
            E  LM R+H  ++NRFR   L + L   W+ + FG EI  +F  QTAEVA+ETL+ E+LQ+QTQELATA+VQ LLND +V+    +FL+EA+ N ET+
Sbjct:  113 EEYLMKRIHIGNQNRFRTAVLGTILTCCWLTATFGQEIYSFFTKQTAEVAKETLRQESLQIQTQELATAIVQTLLNDDQVMKNATIFLKEAAGNEETK 210
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BLAST of mRNA_H-canaliculatus_F_contig13859.3062.1 vs. uniprot
Match: A0A7R9YAX6_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAX6_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.630e-15
Identity = 40/94 (42.55%), Postives = 63/94 (67.02%), Query Frame = 1 
Query:    4 DLERKLMSRVHAQDKNRFRAVGLSSTLLMIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVSAGALFLREAS 285
            ++E +LM    A +  + R    ++ L+ +WV S+FG  IRR+F+ QTAEVARETL+ E LQ +TQELA A+V+ +LND++++     F+R  +
Sbjct:   54 EIEARLMRTTRASNVEQIRLALTAAALVTVWVFSVFGRHIRRFFSKQTAEVARETLENEELQARTQELAAAVVRTILNDEDILVKITAFIRNTA 147
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BLAST of mRNA_H-canaliculatus_F_contig13859.3062.1 vs. uniprot
Match: D7FTZ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ2_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 5.430e-12
Identity = 38/39 (97.44%), Postives = 38/39 (97.44%), Query Frame = 1 
Query:  187 QVQTQELATALVQALLNDQEVVSAGALFLREASANPETQ 303
            QVQTQELATALVQALLNDQEVV AGALFLREASANPETQ
Sbjct:   15 QVQTQELATALVQALLNDQEVVRAGALFLREASANPETQ 53
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BLAST of mRNA_H-canaliculatus_F_contig13859.3062.1 vs. uniprot
Match: A0A6G0XYN6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XYN6_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.470e-7
Identity = 36/86 (41.86%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:   31 VHAQDKNRFRAVGLSSTLLMIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVSAGALFLREASA 288
            ++ Q KN + A GL    +    +  FG E+R      TAEVA ETL+ E+LQ+QTQELA+ +VQ +LND +V+   ++FL++  A
Sbjct:   77 MNMQGKN-WNAWGLGILAIGAVGVVAFGPEMRSKMTKTTAEVATETLQNESLQIQTQELASQIVQTVLNDPKVLDQASVFLKKLFA 161
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BLAST of mRNA_H-canaliculatus_F_contig13859.3062.1 vs. uniprot
Match: A0A397F352_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397F352_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 3.690e-7
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:  109 FGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVSAGALFLREASANPETQ 303
            FG E+R      TAEVA ETL+ E+LQ+QTQELA+ +VQ +LND +V+   + FL++  A   T+
Sbjct:   17 FGPEMRSKMTKTTAEVATETLQNESLQIQTQELASQIVQTVLNDPKVLDQASQFLQKLMATEATR 81
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BLAST of mRNA_H-canaliculatus_F_contig13859.3062.1 vs. uniprot
Match: W4GLD2_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GLD2_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 4.660e-7
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:  109 FGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVSAGALFLREASANPETQ 303
            FG E+R      TAEVA ETL+ E+LQ+QTQELA+ +VQ +LND +V+   + FL++  A   T+
Sbjct:   94 FGPEMRSKMTKTTAEVATETLQNESLQIQTQELASQIVQTVLNDPKVLDQASQFLQKLMATEATR 158
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BLAST of mRNA_H-canaliculatus_F_contig13859.3062.1 vs. uniprot
Match: A0A3L6UT13_9STRA (Tetraacyldisaccharide 4'-kinase n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6UT13_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.100e-7
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:  109 FGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVSAGALFLREASANPETQ 303
            FG E+R      TAEVA ETL+ E+LQ+QTQELA+ +VQ +LND +V+   + FL++  A   T+
Sbjct:   17 FGPEMRSKMTKTTAEVATETLQNESLQIQTQELASQIVQTVLNDPKVLDQASQFLQKLMATEATR 81
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BLAST of mRNA_H-canaliculatus_F_contig13859.3062.1 vs. uniprot
Match: A0A485KNS4_9STRA (Aste57867_9680 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KNS4_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 6.470e-7
Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:   31 VHAQDKNRFRAVGLSSTLLMIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVSAGALFLREASA 288
            ++ Q KN +   GL    + ++ +  FG E+R      TAEVA ETL+ E+LQ+QTQELA+ +VQ +LND +V+     FL++  A
Sbjct:   84 MNMQGKN-WNMWGLGIIGVGVFXMIAFGPEMRSKMTKTTAEVATETLQNESLQIQTQELASQIVQTVLNDPKVLDQACHFLKKLFA 168
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13859.3062.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5K116_9PHAE9.870e-4991.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YV69_9STRA1.260e-2552.48Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3UXV6_HETAK9.050e-2352.04Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9YAX6_9STRA2.630e-1542.55Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
D7FTZ2_ECTSI5.430e-1297.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6G0XYN6_9STRA2.470e-741.86Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A397F352_9STRA3.690e-747.69Uncharacterized protein n=4 Tax=Aphanomyces astaci... [more]
W4GLD2_9STRA4.660e-747.69Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A3L6UT13_9STRA5.100e-747.69Tetraacyldisaccharide 4'-kinase n=5 Tax=Aphanomyce... [more]
A0A485KNS4_9STRA6.470e-740.70Aste57867_9680 protein n=1 Tax=Aphanomyces stellat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13859contigH-canaliculatus_F_contig13859:1003..2804 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue8.2e-10
Seed eggNOG ortholog2880.D7FTZ2
EggNOG OGs2CKXH@1,2SE2H@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-11_003350.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons3
Model size303
Cds size282
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13859.3062.1prot_H-canaliculatus_F_contig13859.3062.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13859 1024..2804 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929127.3817396-UTR-H-canaliculatus_F_contig13859:1002..10231622929127.3817396-UTR-H-canaliculatus_F_contig13859:1002..1023Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13859 1003..1023 +
1696845688.66969-UTR-H-canaliculatus_F_contig13859:1002..10231696845688.66969-UTR-H-canaliculatus_F_contig13859:1002..1023Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13859 1003..1023 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929127.3960817-CDS-H-canaliculatus_F_contig13859:1023..10921622929127.3960817-CDS-H-canaliculatus_F_contig13859:1023..1092Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13859 1024..1092 +
1696845688.683054-CDS-H-canaliculatus_F_contig13859:1023..10921696845688.683054-CDS-H-canaliculatus_F_contig13859:1023..1092Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13859 1024..1092 +
1622929127.4082506-CDS-H-canaliculatus_F_contig13859:1838..19371622929127.4082506-CDS-H-canaliculatus_F_contig13859:1838..1937Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13859 1839..1937 +
1696845688.6983905-CDS-H-canaliculatus_F_contig13859:1838..19371696845688.6983905-CDS-H-canaliculatus_F_contig13859:1838..1937Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13859 1839..1937 +
1622929127.421806-CDS-H-canaliculatus_F_contig13859:2690..28041622929127.421806-CDS-H-canaliculatus_F_contig13859:2690..2804Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13859 2691..2804 +
1696845688.714889-CDS-H-canaliculatus_F_contig13859:2690..28041696845688.714889-CDS-H-canaliculatus_F_contig13859:2690..2804Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13859 2691..2804 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13859.3062.1

>prot_H-canaliculatus_F_contig13859.3062.1 ID=prot_H-canaliculatus_F_contig13859.3062.1|Name=mRNA_H-canaliculatus_F_contig13859.3062.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=94bp
MSRVHAQDKNRFRAVGLSSTLLMIWVLSMFGTEIRRYFASQTAEVARETL
KVEALQVQTQELATALVQALLNDQEVVSAGALFLREASANPETQ
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mRNA from alignment at H-canaliculatus_F_contig13859:1003..2804+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13859.3062.1 ID=mRNA_H-canaliculatus_F_contig13859.3062.1|Name=mRNA_H-canaliculatus_F_contig13859.3062.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1802bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13859:1003..2804+ (Hapterophycus canaliculatus Oshoro5f female)
GCAGATTTGGAGCGCAAGTTGATGTCGAGGGTGCACGCCCAGGACAAGAA
CCGCTTCCGTGCGGTCGGTCTTTCCAGCACGCTTCTCATGGTAAGAGAAG
GGAAAAAAAATACGGTTTCAGGTTGGGGGGGGCAAGAGAGGAAGGGTACA
AGGAGTAGCAGGATCCATTTGGCAGTTTGTTCGGAGGGCTTTTGTCTCTC
GAGGAAAAGTAGCCCAGGTTGTCATCGCATCTGGGTTGTCTTGCGAAAAG
ACCGATAGTGCACTGTGCTCCTCTTCTACTGCTGTGTGTGGTGCGTTTTT
GAGCTCTTCTGGGTTGTCGGGAGAGGCTTTCGCAGGCGTTCCTCGACATG
TCGAGGCGTTCACATCGTAGCGAATTCAGAGGTGCCTTGGAAATCGGGAA
TCGTGTACAATCCTTTCAACGCCGTGTGCGCGCAGTGACCTACACGACGA
GTTCGACAGCGGTTTGACTGCTTGTCCCGGCACCTTCAGAGCACCGACTC
CCACATCTAAAAAGCACGGTCCACGGTAAAAGCATGAAAACACACGTATA
TTGGATATATGCGACGACGGCACCCGTACTTCCAGCATGACTCGAACTTG
CTGTATCTACGTGACCCCGTCTTCCCCGCTGCCTTATCCCGAATTTACAA
GCTGTCCGTATCATTGCCACAGCTGAAATGGATGCTGACTTTCCTTCGCA
TGCTTGCCCCCGGCGCCATGCCCTCCGGCGCATAAGATAACATAATACTT
GAAGTATTTGATAATATTGATAGTTGATAATATTGATAAATATTGATGAT
AATTGGTGGCTTCGCCCCGTTTGCCCCCTTTCGAAGATCTGGGTGCTCAG
CATGTTTGGGACAGAGATCAGGCGGTACTTCGCGAGTCAGACGGCGGAAG
TGGCGAGAGAGACGCTCAAGGTCGAAGCCCTGCAGGTGTGGAAGAGATGG
GAATTGACGGAGGCAACGGGTTCGCGACGCCGTCGGCGGATGGTGTTTCT
CTTGTCCTTGTCCTGCTTGCTCATTGTTGTTGTCAAGGTCAAGGTCAAGG
TTAAGAGCAACATAGGTGCTGATCAGGCTGTGCCGGAGATGGTGCTAAAG
GCTCATCTTCTTAGGGGCAGTGTGGATGAGAGTCGGCCCTGTACCCTGTT
GAGAAAACACAAAATACACGTTCTACCACACCTCCACTGATCTAGTCTTC
TAGACAAGGTCATCATCTGTTATTTGCGAGTGCTTATCCAAGGTCTGCAG
AAAACTACACATCTCGCAGAGCTTGCGGACACGGGGTATGGGGGCGTACA
CAGTAATATGTTTATCGACATGTTGTGTGCCTAGGTTTGTGACGCTGTAC
GCGTAAGCATGCCCGTGTCGGAGCCGTAGGCACCCATGCCTGGGTGTTTC
AGCAAGACTTAAAACCTATGCCCCGCACCACCACGGTACGGAAGAGCTTC
CAGAATTCACGGGGCTTTTCGGATCCGGTGTGGGATGGCCTGTAGAACTC
GCAAGGCTGTCCGGCATCATTCCGGTCCTATAAAATTTACTCATGAATAC
TCCCCGGTAGATGGAAACCTCTTATGCAGACCTCTTATCTGCAGCAAGAA
GTAGCATTGCTCCTGCACGATTTTTGTTTGACGAGGCTAGATCCTTTCCG
ATCGGGTCGCTTCCTTGCCCGTACACGGCGAACCGTAGGTCCAGACGCAA
GAGCTCGCAACGGCGTTGGTGCAAGCCCTGCTGAACGACCAGGAGGTTGT
AAGTGCGGGCGCTCTCTTTCTGCGAGAAGCATCTGCCAATCCGGAGACCC
AG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13859:1003..2804+

>mRNA_H-canaliculatus_F_contig13859.3062.1 ID=mRNA_H-canaliculatus_F_contig13859.3062.1|Name=mRNA_H-canaliculatus_F_contig13859.3062.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=564bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13859:1003..2804+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCGAGGGTGCACGCCCAGGACAAGAACCGCTTCCGTGCGGTCGGTCT
TTCCAGCACGCTTCTCATGATGTCGAGGGTGCACGCCCAGGACAAGAACC
GCTTCCGTGCGGTCGGTCTTTCCAGCACGCTTCTCATGATCTGGGTGCTC
AGCATGTTTGGGACAGAGATCAGGCGGTACTTCGCGAGTCAGACGGCGGA
AGTGGCGAGAGAGACGCTCAAGGTCGAAGCCCTGCAGATCTGGGTGCTCA
GCATGTTTGGGACAGAGATCAGGCGGTACTTCGCGAGTCAGACGGCGGAA
GTGGCGAGAGAGACGCTCAAGGTCGAAGCCCTGCAGGTCCAGACGCAAGA
GCTCGCAACGGCGTTGGTGCAAGCCCTGCTGAACGACCAGGAGGTTGTAA
GTGCGGGCGCTCTCTTTCTGCGAGAAGCATCTGCCAATCCGGAGACCCAG
GTCCAGACGCAAGAGCTCGCAACGGCGTTGGTGCAAGCCCTGCTGAACGA
CCAGGAGGTTGTAAGTGCGGGCGCTCTCTTTCTGCGAGAAGCATCTGCCA
ATCCGGAGACCCAG
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