mRNA_H-canaliculatus_F_contig13856.3060.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig13856.3060.1 vs. uniprot
Match: A0A0M3IZU3_ANISI (Uncharacterized protein n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3IZU3_ANISI) HSP 1 Score: 233 bits (593), Expect = 4.150e-74 Identity = 138/224 (61.61%), Postives = 152/224 (67.86%), Query Frame = 1
Query: 1 LSPVTSATPILSCQRVMSGTLRRLPVTNRRKAGMTSSHHGPYE*GYTRATMGPSRSPDWSLQLDSMKSESLVIVNQNVTVNTFPGLVHTARHT--MGVDCTRSNPRGT-WGWITSLP-----KTGKCP------QRITFLKRV---QPTAYTVDALAIRGDEGRGNLRKALGS**TSFDPAMSEWGNPLTVR*VS*PEYIGLRGERGELKHLSTLRKRNQMRFP 621
LSPVTSAT +LS Q VM GTLRRLPVTNRRK GMTSSHHGPY GYTRATM RSPD SLQLD +KSESLVI NQNV VNTFPGL+ T G + + PR T + W T + G+ P QRIT L V A+TVDALA+RGDE RG+LRKA GS T FDP MSEWGNP +R + EYIG+ E GELKHLSTLRKRNQ RFP
Sbjct: 21 LSPVTSATLVLSYQHVMVGTLRRLPVTNRRKVGMTSSHHGPYGLGYTRATMKTDRSPDRSLQLDCVKSESLVIANQNVAVNTFPGLLSWLERTPDKGEVGSSNLPRPTNFVWETPVEIRGHSSAGRAPALHAGGQRITRLLGVIWSSEEAHTVDALAVRGDERRGSLRKASGSRQTDFDPEMSEWGNPAIIRWLPYTEYIGVWSEPGELKHLSTLRKRNQPRFP 244
BLAST of mRNA_H-canaliculatus_F_contig13856.3060.1 vs. uniprot
Match: A0A2S7V079_9GAMM (Uncharacterized protein n=1 Tax=Psychrosphaera saromensis TaxID=716813 RepID=A0A2S7V079_9GAMM) HSP 1 Score: 138 bits (348), Expect = 5.950e-39 Identity = 72/97 (74.23%), Postives = 74/97 (76.29%), Query Frame = 1
Query: 58 TLRRLPVTNRRKAGMTSSHHGPYE*GYTRATMGPS---------------RSPDWSLQLDSMKSESLVIVNQNVTVNTFPGLVHTARHTMGVDCTRS 303
TLRRLPVTNRRK G TSSHHGPYE GYTRATM + RSPDWSLQLDSMKSESLVIV+QN TVNTFPGLVHTARHTMGV C RS
Sbjct: 3 TLRRLPVTNRRKVGTTSSHHGPYEMGYTRATMASTKGCKLARVSGSHKACRSPDWSLQLDSMKSESLVIVDQNATVNTFPGLVHTARHTMGVGCKRS 99
BLAST of mRNA_H-canaliculatus_F_contig13856.3060.1 vs. uniprot
Match: Q57H85_SALCH (ORF16-lacZ fusion protein n=3 Tax=Enterobacteriaceae TaxID=543 RepID=Q57H85_SALCH) HSP 1 Score: 137 bits (344), Expect = 2.870e-38 Identity = 73/101 (72.28%), Postives = 76/101 (75.25%), Query Frame = 1
Query: 46 VMSGTLRRLPVTNRRKAGMTSSHHGPYE*GYTRATM------------GPS---RSPDWSLQLDSMKSESLVIVNQNVTVNTFPGLVHTARHTMGVDCTRS 303
+ SGT RRLPV N RK GMTSSHHGPY+ GYTRATM GP RSPDWSLQLDSMKSESLVIV+QN TVNTFPGLVHTARHTMGV C RS
Sbjct: 5 IRSGTQRRLPVINWRKVGMTSSHHGPYDQGYTRATMAHTKRSDLARASGPHKVRRSPDWSLQLDSMKSESLVIVDQNATVNTFPGLVHTARHTMGVGCKRS 105
BLAST of mRNA_H-canaliculatus_F_contig13856.3060.1 vs. uniprot
Match: Q1R654_ECOUT (Uncharacterized protein n=20 Tax=cellular organisms TaxID=131567 RepID=Q1R654_ECOUT) HSP 1 Score: 134 bits (338), Expect = 3.660e-37 Identity = 71/101 (70.30%), Postives = 74/101 (73.27%), Query Frame = 1
Query: 46 VMSGTLRRLPVTNRRKAGMTSSHHGPYE*GYTRATMGPS---------------RSPDWSLQLDSMKSESLVIVNQNVTVNTFPGLVHTARHTMGVDCTRS 303
V GT RRLPV N RK GMTSSHHGPY+ GYTRATM + RSPDWSLQLDSMKSESLVIV+QN TVNTFPGLVHTARHTMGV C RS
Sbjct: 20 VRPGTQRRLPVINWRKVGMTSSHHGPYDQGYTRATMAHTKRSDLARASEPHKVRRSPDWSLQLDSMKSESLVIVDQNATVNTFPGLVHTARHTMGVGCKRS 120
BLAST of mRNA_H-canaliculatus_F_contig13856.3060.1 vs. uniprot
Match: A0A822TNY8_SHISO (Uncharacterized protein n=4 Tax=Enterobacteriaceae TaxID=543 RepID=A0A822TNY8_SHISO) HSP 1 Score: 122 bits (306), Expect = 1.040e-32 Identity = 65/91 (71.43%), Postives = 68/91 (74.73%), Query Frame = 1
Query: 76 VTNRRKAGMTSSHHGPYE*GYTRATM------------GPS---RSPDWSLQLDSMKSESLVIVNQNVTVNTFPGLVHTARHTMGVDCTRS 303
+ N RK GMTSSHHGPY+ GYTRATM GP RSPDWSLQLDSMKSESLVIV+QN TVNTFPGLVHTARHTMGV C RS
Sbjct: 1 MINWRKVGMTSSHHGPYDQGYTRATMAHTKRSDLARASGPHKVRRSPDWSLQLDSMKSESLVIVDQNATVNTFPGLVHTARHTMGVGCKRS 91
BLAST of mRNA_H-canaliculatus_F_contig13856.3060.1 vs. uniprot
Match: K1JJS6_9GAMM (Uncharacterized protein n=3 Tax=cellular organisms TaxID=131567 RepID=K1JJS6_9GAMM) HSP 1 Score: 114 bits (286), Expect = 8.590e-30 Identity = 60/83 (72.29%), Postives = 61/83 (73.49%), Query Frame = 1
Query: 100 MTSSHHGPYE*GYTRATMGPS---------------RSPDWSLQLDSMKSESLVIVNQNVTVNTFPGLVHTARHTMGVDCTRS 303
MTSSHHGPY GYTRATM + RSPDWSLQLDSMKSESLVI NQNV VNTFPGLVHTARHTMGV CTRS
Sbjct: 1 MTSSHHGPYGQGYTRATMARTEGCKLAIVSESQKARRSPDWSLQLDSMKSESLVIANQNVAVNTFPGLVHTARHTMGVGCTRS 83
BLAST of mRNA_H-canaliculatus_F_contig13856.3060.1 vs. uniprot
Match: A0A0C9QRI8_9HYME (IleS_1 protein (Fragment) n=1 Tax=Fopius arisanus TaxID=64838 RepID=A0A0C9QRI8_9HYME) HSP 1 Score: 113 bits (283), Expect = 3.870e-29 Identity = 63/100 (63.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query: 25 PILSCQRVMSGTLRRLPVTNRRKAGMTSSHHGPYE*GYTRATMGPSR---------------SPDWSLQLDSMKSESLVIVNQNVTVNTFPGLVHTARHT 279
P SC RV GTL LPVT+RRKAGMTSS HGPY GYTRATM ++ S D SLQLD MK ESLVIV+Q+ TVNTFPGLVHTARHT
Sbjct: 1 PTFSCHRVGPGTLEELPVTSRRKAGMTSSPHGPYGLGYTRATMDNTKGSETARSSKSHKVVLSSDCSLQLDYMKLESLVIVDQHATVNTFPGLVHTARHT 100
BLAST of mRNA_H-canaliculatus_F_contig13856.3060.1 vs. uniprot
Match: A0A3M4LDW2_PSECI (Uncharacterized protein n=49 Tax=Pseudomonas TaxID=286 RepID=A0A3M4LDW2_PSECI) HSP 1 Score: 112 bits (281), Expect = 7.510e-29 Identity = 55/75 (73.33%), Postives = 60/75 (80.00%), Query Frame = 1
Query: 397 AYTVDALAIRGDEGRGNLRKALGS**TSFDPAMSEWGNPLTVR*VS*PEYIGLRGERGELKHLSTLRKRNQMRFP 621
A+TVDALA+RGDE RG+LRKA GS T DP MSEWGNP +R +S EYIG RGE GELKHLSTLRKRNQ RFP
Sbjct: 25 AHTVDALAVRGDERRGSLRKASGSRQTDCDPEMSEWGNPAVIRQLSCTEYIGARGEPGELKHLSTLRKRNQPRFP 99
BLAST of mRNA_H-canaliculatus_F_contig13856.3060.1 vs. uniprot
Match: D5GZ89_LACCS (Uncharacterized protein n=1 Tax=Lactobacillus crispatus (strain ST1) TaxID=748671 RepID=D5GZ89_LACCS) HSP 1 Score: 111 bits (278), Expect = 3.590e-28 Identity = 61/93 (65.59%), Postives = 66/93 (70.97%), Query Frame = 1
Query: 55 GTLRRLPVTNRRKAGMTSSHHGPYE*GYTRATMG------PSR---------SPDWSLQLDSMKSESLVIVNQNVTVNTFPGLVHTARHTMGV 288
GTL RLPVTNRRK GMTSSHH PY+ GYTRATMG P++ S D SLQLD K ESLVI +Q+ VNTFPGLVHTARHTMGV
Sbjct: 10 GTLMRLPVTNRRKVGMTSSHHAPYDLGYTRATMGSTTRSEPAKASESLKAVLSSDCSLQLDCTKLESLVIADQHAAVNTFPGLVHTARHTMGV 102
BLAST of mRNA_H-canaliculatus_F_contig13856.3060.1 vs. uniprot
Match: A0A3G2CK66_9BACT (Uncharacterized protein n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A3G2CK66_9BACT) HSP 1 Score: 110 bits (274), Expect = 1.130e-27 Identity = 61/101 (60.40%), Postives = 66/101 (65.35%), Query Frame = 1
Query: 46 VMSGTLRRLPVTNRRKAGMTSSHHGPYE*GYTRATMGPSR---------------SPDWSLQLDSMKSESLVIVNQNVTVNTFPGLVHTARHTMGVDCTRS 303
V GTL RLP+T RRK GMTSS HG Y GYTRATM ++ S DWSLQLDSMK ESLVI +Q+ VNTFPGLVHTARH V CTRS
Sbjct: 4 VRPGTLLRLPLTKRRKVGMTSSPHGLYVQGYTRATMASTKRCKPAKGSQSQKACLSSDWSLQLDSMKLESLVIADQHAAVNTFPGLVHTARHITKVGCTRS 104 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13856.3060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig13856.3060.1 >prot_H-canaliculatus_F_contig13856.3060.1 ID=prot_H-canaliculatus_F_contig13856.3060.1|Name=mRNA_H-canaliculatus_F_contig13856.3060.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=107bp MGPSRSPDWSLQLDSMKSESLVIVNQNVTVNTFPGLVHTARHTMGVDCTRback to top mRNA from alignment at H-canaliculatus_F_contig13856:257..1178+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig13856.3060.1 ID=mRNA_H-canaliculatus_F_contig13856.3060.1|Name=mRNA_H-canaliculatus_F_contig13856.3060.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=922bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13856:257..1178+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13856:257..1178+ >mRNA_H-canaliculatus_F_contig13856.3060.1 ID=mRNA_H-canaliculatus_F_contig13856.3060.1|Name=mRNA_H-canaliculatus_F_contig13856.3060.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=642bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13856:257..1178+ (Hapterophycus canaliculatus Oshoro5f female)back to top |