mRNA_H-canaliculatus_F_contig13856.3060.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13856.3060.1
Unique NamemRNA_H-canaliculatus_F_contig13856.3060.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
BLAST of mRNA_H-canaliculatus_F_contig13856.3060.1 vs. uniprot
Match: A0A0M3IZU3_ANISI (Uncharacterized protein n=1 Tax=Anisakis simplex TaxID=6269 RepID=A0A0M3IZU3_ANISI)

HSP 1 Score: 233 bits (593), Expect = 4.150e-74
Identity = 138/224 (61.61%), Postives = 152/224 (67.86%), Query Frame = 1
Query:    1 LSPVTSATPILSCQRVMSGTLRRLPVTNRRKAGMTSSHHGPYE*GYTRATMGPSRSPDWSLQLDSMKSESLVIVNQNVTVNTFPGLVHTARHT--MGVDCTRSNPRGT-WGWITSLP-----KTGKCP------QRITFLKRV---QPTAYTVDALAIRGDEGRGNLRKALGS**TSFDPAMSEWGNPLTVR*VS*PEYIGLRGERGELKHLSTLRKRNQMRFP 621
            LSPVTSAT +LS Q VM GTLRRLPVTNRRK GMTSSHHGPY  GYTRATM   RSPD SLQLD +KSESLVI NQNV VNTFPGL+     T   G   + + PR T + W T +        G+ P      QRIT L  V      A+TVDALA+RGDE RG+LRKA GS  T FDP MSEWGNP  +R +   EYIG+  E GELKHLSTLRKRNQ RFP
Sbjct:   21 LSPVTSATLVLSYQHVMVGTLRRLPVTNRRKVGMTSSHHGPYGLGYTRATMKTDRSPDRSLQLDCVKSESLVIANQNVAVNTFPGLLSWLERTPDKGEVGSSNLPRPTNFVWETPVEIRGHSSAGRAPALHAGGQRITRLLGVIWSSEEAHTVDALAVRGDERRGSLRKASGSRQTDFDPEMSEWGNPAIIRWLPYTEYIGVWSEPGELKHLSTLRKRNQPRFP 244          
BLAST of mRNA_H-canaliculatus_F_contig13856.3060.1 vs. uniprot
Match: A0A2S7V079_9GAMM (Uncharacterized protein n=1 Tax=Psychrosphaera saromensis TaxID=716813 RepID=A0A2S7V079_9GAMM)

HSP 1 Score: 138 bits (348), Expect = 5.950e-39
Identity = 72/97 (74.23%), Postives = 74/97 (76.29%), Query Frame = 1
Query:   58 TLRRLPVTNRRKAGMTSSHHGPYE*GYTRATMGPS---------------RSPDWSLQLDSMKSESLVIVNQNVTVNTFPGLVHTARHTMGVDCTRS 303
            TLRRLPVTNRRK G TSSHHGPYE GYTRATM  +               RSPDWSLQLDSMKSESLVIV+QN TVNTFPGLVHTARHTMGV C RS
Sbjct:    3 TLRRLPVTNRRKVGTTSSHHGPYEMGYTRATMASTKGCKLARVSGSHKACRSPDWSLQLDSMKSESLVIVDQNATVNTFPGLVHTARHTMGVGCKRS 99          
BLAST of mRNA_H-canaliculatus_F_contig13856.3060.1 vs. uniprot
Match: Q57H85_SALCH (ORF16-lacZ fusion protein n=3 Tax=Enterobacteriaceae TaxID=543 RepID=Q57H85_SALCH)

HSP 1 Score: 137 bits (344), Expect = 2.870e-38
Identity = 73/101 (72.28%), Postives = 76/101 (75.25%), Query Frame = 1
Query:   46 VMSGTLRRLPVTNRRKAGMTSSHHGPYE*GYTRATM------------GPS---RSPDWSLQLDSMKSESLVIVNQNVTVNTFPGLVHTARHTMGVDCTRS 303
            + SGT RRLPV N RK GMTSSHHGPY+ GYTRATM            GP    RSPDWSLQLDSMKSESLVIV+QN TVNTFPGLVHTARHTMGV C RS
Sbjct:    5 IRSGTQRRLPVINWRKVGMTSSHHGPYDQGYTRATMAHTKRSDLARASGPHKVRRSPDWSLQLDSMKSESLVIVDQNATVNTFPGLVHTARHTMGVGCKRS 105          
BLAST of mRNA_H-canaliculatus_F_contig13856.3060.1 vs. uniprot
Match: Q1R654_ECOUT (Uncharacterized protein n=20 Tax=cellular organisms TaxID=131567 RepID=Q1R654_ECOUT)

HSP 1 Score: 134 bits (338), Expect = 3.660e-37
Identity = 71/101 (70.30%), Postives = 74/101 (73.27%), Query Frame = 1
Query:   46 VMSGTLRRLPVTNRRKAGMTSSHHGPYE*GYTRATMGPS---------------RSPDWSLQLDSMKSESLVIVNQNVTVNTFPGLVHTARHTMGVDCTRS 303
            V  GT RRLPV N RK GMTSSHHGPY+ GYTRATM  +               RSPDWSLQLDSMKSESLVIV+QN TVNTFPGLVHTARHTMGV C RS
Sbjct:   20 VRPGTQRRLPVINWRKVGMTSSHHGPYDQGYTRATMAHTKRSDLARASEPHKVRRSPDWSLQLDSMKSESLVIVDQNATVNTFPGLVHTARHTMGVGCKRS 120          
BLAST of mRNA_H-canaliculatus_F_contig13856.3060.1 vs. uniprot
Match: A0A822TNY8_SHISO (Uncharacterized protein n=4 Tax=Enterobacteriaceae TaxID=543 RepID=A0A822TNY8_SHISO)

HSP 1 Score: 122 bits (306), Expect = 1.040e-32
Identity = 65/91 (71.43%), Postives = 68/91 (74.73%), Query Frame = 1
Query:   76 VTNRRKAGMTSSHHGPYE*GYTRATM------------GPS---RSPDWSLQLDSMKSESLVIVNQNVTVNTFPGLVHTARHTMGVDCTRS 303
            + N RK GMTSSHHGPY+ GYTRATM            GP    RSPDWSLQLDSMKSESLVIV+QN TVNTFPGLVHTARHTMGV C RS
Sbjct:    1 MINWRKVGMTSSHHGPYDQGYTRATMAHTKRSDLARASGPHKVRRSPDWSLQLDSMKSESLVIVDQNATVNTFPGLVHTARHTMGVGCKRS 91          
BLAST of mRNA_H-canaliculatus_F_contig13856.3060.1 vs. uniprot
Match: K1JJS6_9GAMM (Uncharacterized protein n=3 Tax=cellular organisms TaxID=131567 RepID=K1JJS6_9GAMM)

HSP 1 Score: 114 bits (286), Expect = 8.590e-30
Identity = 60/83 (72.29%), Postives = 61/83 (73.49%), Query Frame = 1
Query:  100 MTSSHHGPYE*GYTRATMGPS---------------RSPDWSLQLDSMKSESLVIVNQNVTVNTFPGLVHTARHTMGVDCTRS 303
            MTSSHHGPY  GYTRATM  +               RSPDWSLQLDSMKSESLVI NQNV VNTFPGLVHTARHTMGV CTRS
Sbjct:    1 MTSSHHGPYGQGYTRATMARTEGCKLAIVSESQKARRSPDWSLQLDSMKSESLVIANQNVAVNTFPGLVHTARHTMGVGCTRS 83          
BLAST of mRNA_H-canaliculatus_F_contig13856.3060.1 vs. uniprot
Match: A0A0C9QRI8_9HYME (IleS_1 protein (Fragment) n=1 Tax=Fopius arisanus TaxID=64838 RepID=A0A0C9QRI8_9HYME)

HSP 1 Score: 113 bits (283), Expect = 3.870e-29
Identity = 63/100 (63.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query:   25 PILSCQRVMSGTLRRLPVTNRRKAGMTSSHHGPYE*GYTRATMGPSR---------------SPDWSLQLDSMKSESLVIVNQNVTVNTFPGLVHTARHT 279
            P  SC RV  GTL  LPVT+RRKAGMTSS HGPY  GYTRATM  ++               S D SLQLD MK ESLVIV+Q+ TVNTFPGLVHTARHT
Sbjct:    1 PTFSCHRVGPGTLEELPVTSRRKAGMTSSPHGPYGLGYTRATMDNTKGSETARSSKSHKVVLSSDCSLQLDYMKLESLVIVDQHATVNTFPGLVHTARHT 100          
BLAST of mRNA_H-canaliculatus_F_contig13856.3060.1 vs. uniprot
Match: A0A3M4LDW2_PSECI (Uncharacterized protein n=49 Tax=Pseudomonas TaxID=286 RepID=A0A3M4LDW2_PSECI)

HSP 1 Score: 112 bits (281), Expect = 7.510e-29
Identity = 55/75 (73.33%), Postives = 60/75 (80.00%), Query Frame = 1
Query:  397 AYTVDALAIRGDEGRGNLRKALGS**TSFDPAMSEWGNPLTVR*VS*PEYIGLRGERGELKHLSTLRKRNQMRFP 621
            A+TVDALA+RGDE RG+LRKA GS  T  DP MSEWGNP  +R +S  EYIG RGE GELKHLSTLRKRNQ RFP
Sbjct:   25 AHTVDALAVRGDERRGSLRKASGSRQTDCDPEMSEWGNPAVIRQLSCTEYIGARGEPGELKHLSTLRKRNQPRFP 99          
BLAST of mRNA_H-canaliculatus_F_contig13856.3060.1 vs. uniprot
Match: D5GZ89_LACCS (Uncharacterized protein n=1 Tax=Lactobacillus crispatus (strain ST1) TaxID=748671 RepID=D5GZ89_LACCS)

HSP 1 Score: 111 bits (278), Expect = 3.590e-28
Identity = 61/93 (65.59%), Postives = 66/93 (70.97%), Query Frame = 1
Query:   55 GTLRRLPVTNRRKAGMTSSHHGPYE*GYTRATMG------PSR---------SPDWSLQLDSMKSESLVIVNQNVTVNTFPGLVHTARHTMGV 288
            GTL RLPVTNRRK GMTSSHH PY+ GYTRATMG      P++         S D SLQLD  K ESLVI +Q+  VNTFPGLVHTARHTMGV
Sbjct:   10 GTLMRLPVTNRRKVGMTSSHHAPYDLGYTRATMGSTTRSEPAKASESLKAVLSSDCSLQLDCTKLESLVIADQHAAVNTFPGLVHTARHTMGV 102          
BLAST of mRNA_H-canaliculatus_F_contig13856.3060.1 vs. uniprot
Match: A0A3G2CK66_9BACT (Uncharacterized protein n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A3G2CK66_9BACT)

HSP 1 Score: 110 bits (274), Expect = 1.130e-27
Identity = 61/101 (60.40%), Postives = 66/101 (65.35%), Query Frame = 1
Query:   46 VMSGTLRRLPVTNRRKAGMTSSHHGPYE*GYTRATMGPSR---------------SPDWSLQLDSMKSESLVIVNQNVTVNTFPGLVHTARHTMGVDCTRS 303
            V  GTL RLP+T RRK GMTSS HG Y  GYTRATM  ++               S DWSLQLDSMK ESLVI +Q+  VNTFPGLVHTARH   V CTRS
Sbjct:    4 VRPGTLLRLPLTKRRKVGMTSSPHGLYVQGYTRATMASTKRCKPAKGSQSQKACLSSDWSLQLDSMKLESLVIADQHAAVNTFPGLVHTARHITKVGCTRS 104          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13856.3060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0M3IZU3_ANISI4.150e-7461.61Uncharacterized protein n=1 Tax=Anisakis simplex T... [more]
A0A2S7V079_9GAMM5.950e-3974.23Uncharacterized protein n=1 Tax=Psychrosphaera sar... [more]
Q57H85_SALCH2.870e-3872.28ORF16-lacZ fusion protein n=3 Tax=Enterobacteriace... [more]
Q1R654_ECOUT3.660e-3770.30Uncharacterized protein n=20 Tax=cellular organism... [more]
A0A822TNY8_SHISO1.040e-3271.43Uncharacterized protein n=4 Tax=Enterobacteriaceae... [more]
K1JJS6_9GAMM8.590e-3072.29Uncharacterized protein n=3 Tax=cellular organisms... [more]
A0A0C9QRI8_9HYME3.870e-2963.00IleS_1 protein (Fragment) n=1 Tax=Fopius arisanus ... [more]
A0A3M4LDW2_PSECI7.510e-2973.33Uncharacterized protein n=49 Tax=Pseudomonas TaxID... [more]
D5GZ89_LACCS3.590e-2865.59Uncharacterized protein n=1 Tax=Lactobacillus cris... [more]
A0A3G2CK66_9BACT1.130e-2760.40Uncharacterized protein n=1 Tax=uncultured bacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13856contigH-canaliculatus_F_contig13856:257..1178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score93.6
Seed ortholog evalue6e-17
Seed eggNOG ortholog1187848.AJYQ01000089_gene2720
EggNOG OGs1NAN7@1224,1SCJK@1236,1XYIM@135623,2DMNG@1,32SP1@2
Best tax levelVibrionales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size621
Cds size321
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13856.3060.1prot_H-canaliculatus_F_contig13856.3060.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13856 407..1028 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929127.0661879-UTR-H-canaliculatus_F_contig13856:256..4061622929127.0661879-UTR-H-canaliculatus_F_contig13856:256..406Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13856 257..406 +
1696845688.5574696-UTR-H-canaliculatus_F_contig13856:256..4061696845688.5574696-UTR-H-canaliculatus_F_contig13856:256..406Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13856 257..406 +
1622929127.175218-UTR-H-canaliculatus_F_contig13856:1028..11781622929127.175218-UTR-H-canaliculatus_F_contig13856:1028..1178Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13856 1029..1178 +
1696845688.6013694-UTR-H-canaliculatus_F_contig13856:1028..11781696845688.6013694-UTR-H-canaliculatus_F_contig13856:1028..1178Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13856 1029..1178 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929127.0970821-CDS-H-canaliculatus_F_contig13856:406..4131622929127.0970821-CDS-H-canaliculatus_F_contig13856:406..413Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13856 407..413 +
1696845688.5675116-CDS-H-canaliculatus_F_contig13856:406..4131696845688.5675116-CDS-H-canaliculatus_F_contig13856:406..413Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13856 407..413 +
1622929127.1214285-CDS-H-canaliculatus_F_contig13856:458..6021622929127.1214285-CDS-H-canaliculatus_F_contig13856:458..602Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13856 459..602 +
1696845688.57589-CDS-H-canaliculatus_F_contig13856:458..6021696845688.57589-CDS-H-canaliculatus_F_contig13856:458..602Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13856 459..602 +
1622929127.1425521-CDS-H-canaliculatus_F_contig13856:681..7771622929127.1425521-CDS-H-canaliculatus_F_contig13856:681..777Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13856 682..777 +
1696845688.583849-CDS-H-canaliculatus_F_contig13856:681..7771696845688.583849-CDS-H-canaliculatus_F_contig13856:681..777Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13856 682..777 +
1622929127.1566846-CDS-H-canaliculatus_F_contig13856:954..10281622929127.1566846-CDS-H-canaliculatus_F_contig13856:954..1028Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13856 955..1028 +
1696845688.5924003-CDS-H-canaliculatus_F_contig13856:954..10281696845688.5924003-CDS-H-canaliculatus_F_contig13856:954..1028Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13856 955..1028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13856.3060.1

>prot_H-canaliculatus_F_contig13856.3060.1 ID=prot_H-canaliculatus_F_contig13856.3060.1|Name=mRNA_H-canaliculatus_F_contig13856.3060.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=107bp
MGPSRSPDWSLQLDSMKSESLVIVNQNVTVNTFPGLVHTARHTMGVDCTR
SNPRGTWGWITSLPKTGKCPQRITFLKRVQPTAYTVDALAIRGDEGRGNL
RKALGS*
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mRNA from alignment at H-canaliculatus_F_contig13856:257..1178+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13856.3060.1 ID=mRNA_H-canaliculatus_F_contig13856.3060.1|Name=mRNA_H-canaliculatus_F_contig13856.3060.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=922bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13856:257..1178+ (Hapterophycus canaliculatus Oshoro5f female)
TTAAGTCCCGTAACGAGCGCAACCCCTATCCTTAGTTGCCAGCGAGTAAT GTCGGGGACTCTAAGGAGACTGCCGGTGACAAACCGGAGGAAGGCGGGGA TGACGTCAAGTCATCATGGCCCTTACGAGTAGGGCTACACACGTGCTACA ATGGGGCGTACAGAGGGTTGCAAAGCCGCGAGGTGGAGCTAATCTCAGAA AGCGTCTCGTAGTCCGGATTGGAGTCTGCAACTCGACTCCATGAAGTCGG AATCGCTAGTAATCGTGAATCAGAACGTCACGGTGAATACGTTCCCGGGC CTTGTACACACCGCCCGTCACACCATGGGAGTTGATTGCACCAGAAGTGG GTAGCTTAACTTATTCTTCGGAATGAAGGGCGCTCACCACGGTGTGGTTG ATGACTGGGGTGAAGTCGTAACAAGGTAACCCTAGGGGAACCTGGGGTTG GATCACCTCCTTACCCAAGACCGGCAAGTGTCCACAACGAATTACTTTTC TAAAGCGTGTCCAGCCGACTGGTTGAGATGTGTTTTAGTCGTTCTTTAAC AATCTAGAAGAGTTCTCAAAGAAAGAAAAACGGTTGTGTATGAGTTGTTC AAGCCGAGCAATGAATATGCGACAAACTCAAGCGTAACAACGATATAGTA CAGTCCTGAATCAGAAACCTTTTTGGGTTATATGGTCAAGTGACTAAGCG TATACGGTGGATGCCTTGGCAATCAGAGGCGATGAAGGACGTGGTAATCT GCGAAAAGCGTTGGGGAGCTGATAAACAAGCTTTGATCCAGCGATGTCCG AATGGGGGAACCCACTCACTGTAAGGTGAGTATCTTGACCTGAATACATA GGGTTAAGAGGCGAACGAGGGGAACTGAAACATCTAAGTACCCTTAGGAA AAGAAATCAAATGAGATTCCCT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13856:257..1178+

>mRNA_H-canaliculatus_F_contig13856.3060.1 ID=mRNA_H-canaliculatus_F_contig13856.3060.1|Name=mRNA_H-canaliculatus_F_contig13856.3060.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=642bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13856:257..1178+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGGCATGGGGCCGTCTCGTAGTCCGGATTGGAGTCTGCAACTCGACT
CCATGAAGTCGGAATCGCTAGTAATCGTGAATCAGAACGTCACGGTGAAT
ACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTTGATTG
CACCAGAACGTCTCGTAGTCCGGATTGGAGTCTGCAACTCGACTCCATGA
AGTCGGAATCGCTAGTAATCGTGAATCAGAACGTCACGGTGAATACGTTC
CCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTTGATTGCACCAG
AAGTAACCCTAGGGGAACCTGGGGTTGGATCACCTCCTTACCCAAGACCG
GCAAGTGTCCACAACGAATTACTTTTCTAAAGCGTGTCCAGCCGACTGGT
AACCCTAGGGGAACCTGGGGTTGGATCACCTCCTTACCCAAGACCGGCAA
GTGTCCACAACGAATTACTTTTCTAAAGCGTGTCCAGCCGACTGCGTATA
CGGTGGATGCCTTGGCAATCAGAGGCGATGAAGGACGTGGTAATCTGCGA
AAAGCGTTGGGGAGCTGACGTATACGGTGGATGCCTTGGCAATCAGAGGC
GATGAAGGACGTGGTAATCTGCGAAAAGCGTTGGGGAGCTGA
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