mRNA_H-canaliculatus_F_contig13844.3050.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13844.3050.1
Unique NamemRNA_H-canaliculatus_F_contig13844.3050.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13844.3050.1 vs. uniprot
Match: D8LKU2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKU2_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 7.470e-12
Identity = 60/123 (48.78%), Postives = 65/123 (52.85%), Query Frame = 1 
Query:   34 RVWVFHNFLAERGFRRQSLTGLSVWVANSTLSLLASTGPPAHELDGVAGGGFVDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLLGDEPDGGNEFPPITHATL 402
            RVWV HNFLA RG RR SL GLSVW+ANST SLL +  PP  E +      +  G    XXXXXXXXX                                 LLLLGD PDGGN+FPPITHATL
Sbjct:  511 RVWVLHNFLAVRGLRRLSLNGLSVWLANSTSSLLGN--PPEGEYEYR----YYYGARADXXXXXXXXXLLFRFHRAFDGFSGLPLPGPEGNSSSLAAAASILLLLGDAPDGGNDFPPITHATL 627
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13844.3050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKU2_ECTSI7.470e-1248.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13844contigH-canaliculatus_F_contig13844:539..2095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue4.6e-12
Seed eggNOG ortholog2880.D8LKU2
EggNOG OGs28RAS@1,2QXZV@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1271
Cds size741
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13844.3050.1prot_H-canaliculatus_F_contig13844.3050.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13844 539..1565 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929125.6618588-CDS-H-canaliculatus_F_contig13844:538..9391622929125.6618588-CDS-H-canaliculatus_F_contig13844:538..939Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13844 539..939 +
1696845688.0231807-CDS-H-canaliculatus_F_contig13844:538..9391696845688.0231807-CDS-H-canaliculatus_F_contig13844:538..939Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13844 539..939 +
1622929125.6777112-CDS-H-canaliculatus_F_contig13844:1225..15651622929125.6777112-CDS-H-canaliculatus_F_contig13844:1225..1565Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13844 1226..1565 +
1696845688.033725-CDS-H-canaliculatus_F_contig13844:1225..15651696845688.033725-CDS-H-canaliculatus_F_contig13844:1225..1565Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13844 1226..1565 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929125.6907117-UTR-H-canaliculatus_F_contig13844:1565..20951622929125.6907117-UTR-H-canaliculatus_F_contig13844:1565..2095Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13844 1566..2095 +
1696845688.044535-UTR-H-canaliculatus_F_contig13844:1565..20951696845688.044535-UTR-H-canaliculatus_F_contig13844:1565..2095Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13844 1566..2095 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13844.3050.1

>prot_H-canaliculatus_F_contig13844.3050.1 ID=prot_H-canaliculatus_F_contig13844.3050.1|Name=mRNA_H-canaliculatus_F_contig13844.3050.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=247bp
HEAGSVDANGRRVWVFHNFLAERGFRRQSLTGLSVWVANSTLSLLASTGP
PAHELDGVAGGGFVDGDGDGDGDGDDEDAFRFRFNRGFDGNSGLPLPGAE
GNGSSLAAAVAVLLLLGDEPDGGNEFPPITHATLHPGQERTGFGEGGRLT
KKALQGWTLFDRGLELDREGSRLSRLLLPSGLISSRGWRTGVAWALASIA
LRGSHTSSLWCGYVRADDRRVPRPVSLKFVSRDRDTAAEVVGCGCS*
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mRNA from alignment at H-canaliculatus_F_contig13844:539..2095+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13844.3050.1 ID=mRNA_H-canaliculatus_F_contig13844.3050.1|Name=mRNA_H-canaliculatus_F_contig13844.3050.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1557bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13844:539..2095+ (Hapterophycus canaliculatus Oshoro5f female)
CACGAGGCGGGGAGTGTCGACGCCAACGGCCGGCGGGTGTGGGTGTTCCA
CAACTTTCTGGCGGAGCGGGGGTTCCGGCGGCAGTCTCTGACCGGCCTCT
CGGTGTGGGTGGCCAACTCCACTCTGTCCCTCCTCGCGTCGACGGGGCCC
CCAGCGCACGAGCTCGACGGCGTCGCCGGCGGCGGGTTCGTGGACGGCGA
CGGCGACGGCGACGGCGACGGCGACGACGAGGACGCCTTCCGCTTTCGGT
TTAACCGGGGTTTCGACGGGAACAGCGGGCTTCCCCTGCCGGGGGCCGAG
GGGAACGGGTCTTCCCTAGCCGCCGCCGTGGCGGTTCTGCTGCTGCTCGG
GGACGAGCCCGACGGCGGCAACGAGTTCCCCCCGATCACTCACGCCACGC
TGTGAGTGCGGACCAGCCCGCCGATAGTTTCCCGCCCGTCGGTTGTAAGG
TTGTGGTCAACGTTGTTGTTGTCCAGCCGCCGTGAGACGGAGTCAGGTCG
AAGAGGACTGCCTGAGGGCTGACCGCCACCGCTTACCGGAGTGTGCTACG
ACGGAGCCCCCAGAAACACTGACTTTGTTGGATGAGTCAGTTTCTGCCCG
GCCTTTGAAGCAGCAGCGTATCCATTGCCTGTCCCTGTGCTGCTGTCCAT
CGCGCTTGATCCATCACAAATGGCTGCACCGCGGAAGGCATCCTGGCCAA
GAGCGTACCGGTTTTGGCGAGGGGGGGAGGCTCACCAAGAAGGCACTCCA
GGGTTGGACTCTTTTCGATCGAGGGTTAGAGCTCGATCGGGAAGGCTCAC
GACTTTCCCGCCTCCTCTTGCCATCGGGGCTGATTTCTTCGCGAGGGTGG
CGAACGGGGGTGGCGTGGGCTTTAGCTTCCATAGCTCTACGTGGTTCGCA
CACGAGTAGCCTTTGGTGCGGGTATGTTCGGGCAGACGACCGTAGAGTGC
CGCGGCCCGTCTCCCTGAAATTTGTCTCGCGCGATAGGGACACTGCCGCT
GAGGTTGTCGGCTGCGGTTGCAGCTGAAAGTTGCCCACAGTACGCCATGT
CGGTTGTCTACGCTTCGATCAAGGTTTTGTGGCCTTCCTCGTGCTGTTTT
CGTCGAGCGATGCTCCTCTCAGTGTGTTTCTCATCCTGCGCTCTCCGTGT
TGCTGTCTTCCTCTTTCTCTCTTGTTCAATCTCTGTGGCCTGTTTGTCCC
CGTCCCCGACTCTCGCCACTCTCACCGTTTCTTGCGCCTCGGACGACCAG
ATTCGTGTTGGTGGCGATCGAGCTTGCGTTTACCTTCGCGATGGGCGTCT
CTTGCCTGATCTTCAGCGTCAACCTGGTGCGCAAGCTCCGAGAGGAAGAC
CAGCAACACCCTTCGTACCACCACCGCCGACTCTCGAGCCACGGGGGCGG
CCGCAGCGGCGGCGGCGGCGGCGGCGGCGGCAGCAGCGGCAGCGGCAGCG
GCGGGTACTTTACCGGAGCGGGGGTGGGGGCGGTGCGGACGAAGGCAGAG
GGCGGGGAGAGGTACGGGGAGGACGTGAGCGGGAGCGGCGCGCGATCTTC
GTCCCGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13844:539..2095+

>mRNA_H-canaliculatus_F_contig13844.3050.1 ID=mRNA_H-canaliculatus_F_contig13844.3050.1|Name=mRNA_H-canaliculatus_F_contig13844.3050.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1482bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13844:539..2095+ (Hapterophycus canaliculatus Oshoro5f female)
CACGAGGCGGGGAGTGTCGACGCCAACGGCCGGCGGGTGTGGGTGTTCCA
CAACTTTCTGGCGGAGCGGGGGTTCCGGCGGCAGTCTCTGACCGGCCTCT
CGGTGTGGGTGGCCAACTCCACTCTGTCCCTCCTCGCGTCGACGGGGCCC
CCAGCGCACGAGCTCGACGGCGTCGCCGGCGGCGGGTTCGTGGACGGCGA
CGGCGACGGCGACGGCGACGGCGACGACGAGGACGCCTTCCGCTTTCGGT
TTAACCGGGGTTTCGACGGGAACAGCGGGCTTCCCCTGCCGGGGGCCGAG
GGGAACGGGTCTTCCCTAGCCGCCGCCGTGGCGGTTCTGCTGCTGCTCGG
GGACGAGCCCGACGGCGGCAACGAGTTCCCCCCGATCACTCACGCCACGC
TCACGAGGCGGGGAGTGTCGACGCCAACGGCCGGCGGGTGTGGGTGTTCC
ACAACTTTCTGGCGGAGCGGGGGTTCCGGCGGCAGTCTCTGACCGGCCTC
TCGGTGTGGGTGGCCAACTCCACTCTGTCCCTCCTCGCGTCGACGGGGCC
CCCAGCGCACGAGCTCGACGGCGTCGCCGGCGGCGGGTTCGTGGACGGCG
ACGGCGACGGCGACGGCGACGGCGACGACGAGGACGCCTTCCGCTTTCGG
TTTAACCGGGGTTTCGACGGGAACAGCGGGCTTCCCCTGCCGGGGGCCGA
GGGGAACGGGTCTTCCCTAGCCGCCGCCGTGGCGGTTCTGCTGCTGCTCG
GGGACGAGCCCGACGGCGGCAACGAGTTCCCCCCGATCACTCACGCCACG
CTGCATCCTGGCCAAGAGCGTACCGGTTTTGGCGAGGGGGGGAGGCTCAC
CAAGAAGGCACTCCAGGGTTGGACTCTTTTCGATCGAGGGTTAGAGCTCG
ATCGGGAAGGCTCACGACTTTCCCGCCTCCTCTTGCCATCGGGGCTGATT
TCTTCGCGAGGGTGGCGAACGGGGGTGGCGTGGGCTTTAGCTTCCATAGC
TCTACGTGGTTCGCACACGAGTAGCCTTTGGTGCGGGTATGTTCGGGCAG
ACGACCGTAGAGTGCCGCGGCCCGTCTCCCTGAAATTTGTCTCGCGCGAT
AGGGACACTGCCGCTGAGGTTGTCGGCTGCGGTTGCAGCTGAGCATCCTG
GCCAAGAGCGTACCGGTTTTGGCGAGGGGGGGAGGCTCACCAAGAAGGCA
CTCCAGGGTTGGACTCTTTTCGATCGAGGGTTAGAGCTCGATCGGGAAGG
CTCACGACTTTCCCGCCTCCTCTTGCCATCGGGGCTGATTTCTTCGCGAG
GGTGGCGAACGGGGGTGGCGTGGGCTTTAGCTTCCATAGCTCTACGTGGT
TCGCACACGAGTAGCCTTTGGTGCGGGTATGTTCGGGCAGACGACCGTAG
AGTGCCGCGGCCCGTCTCCCTGAAATTTGTCTCGCGCGATAGGGACACTG
CCGCTGAGGTTGTCGGCTGCGGTTGCAGCTGA
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