mRNA_H-canaliculatus_F_contig13843.3049.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13843.3049.1
Unique NamemRNA_H-canaliculatus_F_contig13843.3049.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13843.3049.1 vs. uniprot
Match: D7G0W4_ECTSI (ABC transmembrane type-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0W4_ECTSI)

HSP 1 Score: 254 bits (648), Expect = 9.590e-78
Identity = 134/147 (91.16%), Postives = 140/147 (95.24%), Query Frame = 1 
Query:    1 MIDNVVEGGEEDDFRRSTVYLVLAAVACAIFSGTRGGIFTVVGARVNVRVRRRLFESLVRQEIGFFDTTKTGDLTSRLASDCTKIGDQVTLNVNVFLRNFVMVVVTLLFMFYLSWRLSLVAFISVPAIVTVSKWYGQYIRNLSKLSQ 441
            MIDNVVEGG + +FRRSTVYLVLAAV+CAIFSG RG IF+VVGARVNVRVRRRLFESLVRQEIGFFDTTKTGDLTSRLASDCTK+GDQVTLNVNVFLRN VMVVVTLLFMFYLSWRLSLVAFISVPAIV VSKWYG+YIR LSKLSQ
Sbjct:  113 MIDNVVEGGGDSEFRRSTVYLVLAAVSCAIFSGIRGCIFSVVGARVNVRVRRRLFESLVRQEIGFFDTTKTGDLTSRLASDCTKVGDQVTLNVNVFLRNLVMVVVTLLFMFYLSWRLSLVAFISVPAIVIVSKWYGEYIRKLSKLSQ 259
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BLAST of mRNA_H-canaliculatus_F_contig13843.3049.1 vs. uniprot
Match: A0A835YSY9_9STRA (ABC transporter type 1, transmembrane domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSY9_9STRA)

HSP 1 Score: 199 bits (507), Expect = 1.450e-55
Identity = 101/147 (68.71%), Postives = 125/147 (85.03%), Query Frame = 1 
Query:    1 MIDNVVEGGEEDDFRRSTVYLVLAAVACAIFSGTRGGIFTVVGARVNVRVRRRLFESLVRQEIGFFDTTKTGDLTSRLASDCTKIGDQVTLNVNVFLRNFVMVVVTLLFMFYLSWRLSLVAFISVPAIVTVSKWYGQYIRNLSKLSQ 441
            M+  VV+ G E DFR + V LV AA+ CAIF+G RGG+FT+VG+RVNVR+R+ LF+SLVRQEIGFFDTTKTG++TSRL++DCTK+GDQV LN+N+FLRNFV    TLLFMFYLSWRLS VAF+SVPAIV VS++YG +IR+L+K  Q
Sbjct:  107 MVAAVVDRGREADFRPAAVRLVGAAIVCAIFTGVRGGLFTLVGSRVNVRIRQMLFDSLVRQEIGFFDTTKTGEITSRLSADCTKVGDQVCLNINLFLRNFVQAAGTLLFMFYLSWRLSTVAFVSVPAIVGVSRYYGHFIRDLAKQVQ 253
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BLAST of mRNA_H-canaliculatus_F_contig13843.3049.1 vs. uniprot
Match: W7TKE5_9STRA (Atp-binding cassette sub-family b member 9 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKE5_9STRA)

HSP 1 Score: 174 bits (440), Expect = 2.700e-45
Identity = 91/146 (62.33%), Postives = 111/146 (76.03%), Query Frame = 1 
Query:    4 IDNVVEGGEEDDFRRSTVYLVLAAVACAIFSGTRGGIFTVVGARVNVRVRRRLFESLVRQEIGFFDTTKTGDLTSRLASDCTKIGDQVTLNVNVFLRNFVMVVVTLLFMFYLSWRLSLVAFISVPAIVTVSKWYGQYIRNLSKLSQ 441
            ID +V       F+ + V LVL A  C   +G RG IFT+VGARVN R+R  LF+SL+RQE+GFFDT KTGDL+SRL+SDCTK+GDQV+LN+N FLR+ V  V TL+FMF  SW+LSLVAF+SVP IV +SK YGQYIR LSK +Q
Sbjct:  384 IDAIVSEEGAAAFQHAMVMLVLCAAVCGACTGLRGAIFTIVGARVNRRIRDMLFQSLIRQEVGFFDTAKTGDLSSRLSSDCTKVGDQVSLNINFFLRSLVQAVGTLIFMFIQSWKLSLVAFVSVPVIVIMSKIYGQYIRKLSKATQ 529
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BLAST of mRNA_H-canaliculatus_F_contig13843.3049.1 vs. uniprot
Match: A0A7R9YXX6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YXX6_9STRA)

HSP 1 Score: 154 bits (388), Expect = 2.360e-43
Identity = 77/120 (64.17%), Postives = 98/120 (81.67%), Query Frame = 1 
Query:   61 LVLAAVACAIFSGTRGGIFTVVGARVNVRVRRRLFESLVRQEIGFFDTTKTGDLTSRLASDCTKIGDQVTLNVNVFLRNFVMVVVTLLFMFYLSWRLSLVAFISVPAIVTVSKWYGQYIR 420
            LV+A++   +F+G RG IFTVVG RVNVR+R  L +SL+ Q+IGFFD TKTGD+TSRL+SD T +GDQVT NVN+FLR+FV  V  L+FMF +SW+LSL+AFISVPAI  +SKWYG Y++
Sbjct:   12 LVVASILAGLFAGIRGSIFTVVGGRVNVRMRLVLMDSLLCQDIGFFDVTKTGDITSRLSSDTTLVGDQVTYNVNIFLRSFVQAVGVLIFMFMISWKLSLLAFISVPAITILSKWYGHYVK 131
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BLAST of mRNA_H-canaliculatus_F_contig13843.3049.1 vs. uniprot
Match: A0A7S2PB77_9STRA (Hypothetical protein (Fragment) n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PB77_9STRA)

HSP 1 Score: 164 bits (414), Expect = 3.430e-42
Identity = 83/134 (61.94%), Postives = 107/134 (79.85%), Query Frame = 1 
Query:   40 FRRSTVYLVLAAVACAIFSGTRGGIFTVVGARVNVRVRRRLFESLVRQEIGFFDTTKTGDLTSRLASDCTKIGDQVTLNVNVFLRNFVMVVVTLLFMFYLSWRLSLVAFISVPAIVTVSKWYGQYIRNLSKLSQ 441
            FR +   LV+AA+ CA+FSG RGGIFT++G RVN R+R +L +SL+ QEIGFFDTTKTGD+TSRL SD T +GDQVTLNVNVFLR+FV  +  L+FMF +SWRL+++  +SVPAI  +SK YG ++R L+KL Q
Sbjct:  429 FRSNIQKLVIAALLCALFSGLRGGIFTLIGGRVNSRLRLKLMDSLLAQEIGFFDTTKTGDITSRLCSDTTMVGDQVTLNVNVFLRSFVQAIGVLVFMFLVSWRLTMLVLLSVPAITIMSKLYGAFMRKLTKLMQ 562
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BLAST of mRNA_H-canaliculatus_F_contig13843.3049.1 vs. uniprot
Match: B7FY43_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FY43_PHATC)

HSP 1 Score: 163 bits (412), Expect = 4.000e-42
Identity = 85/138 (61.59%), Postives = 107/138 (77.54%), Query Frame = 1 
Query:   28 EEDDFRRSTVYLVLAAVACAIFSGTRGGIFTVVGARVNVRVRRRLFESLVRQEIGFFDTTKTGDLTSRLASDCTKIGDQVTLNVNVFLRNFVMVVVTLLFMFYLSWRLSLVAFISVPAIVTVSKWYGQYIRNLSKLSQ 441
            E  +F +    LVLA+V   +FSG RG +FTVVG RVNVR+R +L +SL+ Q+IGFFDTTKTGD+TSRL+SD T +GDQVTLNVNVFLR+ V     LL MF +SW+LS++AFISVP I  +SKWYG Y+R+L+KL Q
Sbjct:    3 EVPNFIKYVKLLVLASVLAGVFSGLRGSVFTVVGGRVNVRLRIQLMDSLLSQDIGFFDTTKTGDITSRLSSDTTLVGDQVTLNVNVFLRSLVQAFGVLLCMFLISWQLSILAFISVPLITILSKWYGNYVRSLTKLMQ 140
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BLAST of mRNA_H-canaliculatus_F_contig13843.3049.1 vs. uniprot
Match: A0A7S2KWJ3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KWJ3_9STRA)

HSP 1 Score: 164 bits (414), Expect = 4.470e-42
Identity = 83/134 (61.94%), Postives = 107/134 (79.85%), Query Frame = 1 
Query:   40 FRRSTVYLVLAAVACAIFSGTRGGIFTVVGARVNVRVRRRLFESLVRQEIGFFDTTKTGDLTSRLASDCTKIGDQVTLNVNVFLRNFVMVVVTLLFMFYLSWRLSLVAFISVPAIVTVSKWYGQYIRNLSKLSQ 441
            FR +   LV+AA+ CA+FSG RGGIFT++G RVN R+R +L +SL+ QEIGFFDTTKTGD+TSRL SD T +GDQVTLNVNVFLR+FV  +  L+FMF +SWRL+++  +SVPAI  +SK YG ++R L+KL Q
Sbjct:  168 FRSNIQKLVIAALLCALFSGLRGGIFTLIGGRVNSRLRLKLMDSLLAQEIGFFDTTKTGDITSRLCSDTTMVGDQVTLNVNVFLRSFVQAIGVLVFMFLVSWRLTMLVLLSVPAITIMSKLYGAFMRKLTKLMQ 301
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BLAST of mRNA_H-canaliculatus_F_contig13843.3049.1 vs. uniprot
Match: A0A7S2PB08_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PB08_9STRA)

HSP 1 Score: 164 bits (414), Expect = 8.970e-42
Identity = 83/134 (61.94%), Postives = 107/134 (79.85%), Query Frame = 1 
Query:   40 FRRSTVYLVLAAVACAIFSGTRGGIFTVVGARVNVRVRRRLFESLVRQEIGFFDTTKTGDLTSRLASDCTKIGDQVTLNVNVFLRNFVMVVVTLLFMFYLSWRLSLVAFISVPAIVTVSKWYGQYIRNLSKLSQ 441
            FR +   LV+AA+ CA+FSG RGGIFT++G RVN R+R +L +SL+ QEIGFFDTTKTGD+TSRL SD T +GDQVTLNVNVFLR+FV  +  L+FMF +SWRL+++  +SVPAI  +SK YG ++R L+KL Q
Sbjct:  428 FRSNIQKLVIAALLCALFSGLRGGIFTLIGGRVNSRLRLKLMDSLLAQEIGFFDTTKTGDITSRLCSDTTMVGDQVTLNVNVFLRSFVQAIGVLVFMFLVSWRLTMLVLLSVPAITIMSKLYGAFMRKLTKLMQ 561
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BLAST of mRNA_H-canaliculatus_F_contig13843.3049.1 vs. uniprot
Match: A0A7S3LJM9_9STRA (Hypothetical protein n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LJM9_9STRA)

HSP 1 Score: 159 bits (403), Expect = 2.400e-40
Identity = 80/127 (62.99%), Postives = 104/127 (81.89%), Query Frame = 1 
Query:   61 LVLAAVACAIFSGTRGGIFTVVGARVNVRVRRRLFESLVRQEIGFFDTTKTGDLTSRLASDCTKIGDQVTLNVNVFLRNFVMVVVTLLFMFYLSWRLSLVAFISVPAIVTVSKWYGQYIRNLSKLSQ 441
            LV+A+V   +FSG RG IFTVVG RVNVR+R +L ++L+ Q+IGFFD TKTGD+TSRL+SD T +GDQVTLNVNVFLR+ V  +  L FMF++SW+LS++AFISVP I  +SKWYG ++R+L+KL Q
Sbjct:  340 LVIASVLAGVFSGLRGSIFTVVGGRVNVRLRVQLMDALLAQDIGFFDVTKTGDITSRLSSDTTLVGDQVTLNVNVFLRSLVQAIGVLGFMFFVSWQLSILAFISVPLITILSKWYGMFVRSLTKLMQ 466
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BLAST of mRNA_H-canaliculatus_F_contig13843.3049.1 vs. uniprot
Match: A0A1E7FK35_9STRA (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FK35_9STRA)

HSP 1 Score: 155 bits (392), Expect = 8.300e-40
Identity = 78/127 (61.42%), Postives = 100/127 (78.74%), Query Frame = 1 
Query:   61 LVLAAVACAIFSGTRGGIFTVVGARVNVRVRRRLFESLVRQEIGFFDTTKTGDLTSRLASDCTKIGDQVTLNVNVFLRNFVMVVVTLLFMFYLSWRLSLVAFISVPAIVTVSKWYGQYIRNLSKLSQ 441
            L++ ++   +FSG RG IF VVG RVNVR+R RL  SL+  E GFFD TKTGD+TSRL+SD T +GDQVTLNVNVFLR+ V V+  L+FMF +SW+LSL+AFISVP I  +SKWYG ++R+L+K+ Q
Sbjct:    7 LIVVSILSGVFSGVRGSIFMVVGGRVNVRLRLRLMSSLLTYEQGFFDLTKTGDITSRLSSDTTLVGDQVTLNVNVFLRSLVQVIGVLIFMFMVSWQLSLLAFISVPVITVLSKWYGNFVRSLTKVMQ 133
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13843.3049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0W4_ECTSI9.590e-7891.16ABC transmembrane type-1 domain-containing protein... [more]
A0A835YSY9_9STRA1.450e-5568.71ABC transporter type 1, transmembrane domain-conta... [more]
W7TKE5_9STRA2.700e-4562.33Atp-binding cassette sub-family b member 9 n=1 Tax... [more]
A0A7R9YXX6_9STRA2.360e-4364.17Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2PB77_9STRA3.430e-4261.94Hypothetical protein (Fragment) n=2 Tax=Leptocylin... [more]
B7FY43_PHATC4.000e-4261.59Predicted protein n=3 Tax=Phaeodactylum tricornutu... [more]
A0A7S2KWJ3_9STRA4.470e-4261.94Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S2PB08_9STRA8.970e-4261.94Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A7S3LJM9_9STRA2.400e-4062.99Hypothetical protein n=2 Tax=Amphora coffeiformis ... [more]
A0A1E7FK35_9STRA8.300e-4061.42p-loop containing nucleoside triphosphate hydrolas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13843contigH-canaliculatus_F_contig13843:390..2625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score255.4
Seed ortholog evalue3.1e-65
Seed eggNOG ortholog2880.D7G0W4
Preferred nameABCB9
KEGG koko:K02021,ko:K05653,ko:K05654,ko:K05656,ko:K05658
KEGG TC3.A.1.106,3.A.1.110,3.A.1.112,3.A.1.113,3.A.1.117,3.A.1.201,3.A.1.209,3.A.1.21
KEGG Pathwayko02010,ko04142,ko04145,ko04612,ko04976,ko05168,ko05206,ko05226,ko05340,map02010,map04142,map04145,map04612,map04976,map05168,map05206,map05226,map05340
GOsGO:0000166,GO:0000323,GO:0001910,GO:0001911,GO:0001912,GO:0001914,GO:0001916,GO:0002237,GO:0002376,GO:0002428,GO:0002474,GO:0002475,GO:0002476,GO:0002477,GO:0002478,GO:0002479,GO:0002481,GO:0002483,GO:0002484,GO:0002485,GO:0002488,GO:0002489,GO:0002577,GO:0002579,GO:0002583,GO:0002585,GO:0002589,GO:0002591,GO:0002682,GO:0002683,GO:0002684,GO:0002697,GO:0002698,GO:0002699,GO:0002703,GO:0002704,GO:0002705,GO:0002706,GO:0002707,GO:0002708,GO:0002709,GO:0002711,GO:0002715,GO:0002716,GO:0002819,GO:0002821,GO:0002822,GO:0002824,GO:0003674,GO:0003823,GO:0003824,GO:0005102,GO:0005215,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005793,GO:0005815,GO:0005856,GO:0005886,GO:0006629,GO:0006810,GO:0006857,GO:0006906,GO:0006950,GO:0006952,GO:0006996,GO:0007034,GO:0007041,GO:0008144,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009987,GO:0010033,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0012505,GO:0012506,GO:0015399,GO:0015405,GO:0015421,GO:0015433,GO:0015440,GO:0015630,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016246,GO:0016441,GO:0016458,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019222,GO:0019882,GO:0019883,GO:0019884,GO:0019885,GO:0022607,GO:0022804,GO:0022857,GO:0023029,GO:0030139,GO:0030176,GO:0030554,GO:0030659,GO:0030666,GO:0030670,GO:0031047,GO:0031090,GO:0031224,GO:0031227,GO:0031341,GO:0031342,GO:0031343,GO:0031347,GO:0031348,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033116,GO:0033218,GO:0033220,GO:0035194,GO:0035264,GO:0035639,GO:0035672,GO:0035673,GO:0036094,GO:0040007,GO:0040029,GO:0042175,GO:0042221,GO:0042269,GO:0042270,GO:0042277,GO:0042287,GO:0042288,GO:0042590,GO:0042605,GO:0042623,GO:0042626,GO:0042802,GO:0042803,GO:0042824,GO:0042825,GO:0042886,GO:0042887,GO:0043167,GO:0043168,GO:0043190,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043492,GO:0043531,GO:0043933,GO:0044085,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044432,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044451,GO:0044459,GO:0044464,GO:0045088,GO:0045335,GO:0045824,GO:0045953,GO:0046907,GO:0046967,GO:0046968,GO:0046977,GO:0046978,GO:0046979,GO:0046980,GO:0046982,GO:0046983,GO:0048002,GO:0048284,GO:0048518,GO:0048519,GO:0048583,GO:0048584,GO:0048585,GO:0048589,GO:0050776,GO:0050777,GO:0050778,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0055085,GO:0060255,GO:0061024,GO:0061025,GO:0065003,GO:0065007,GO:0070013,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0080134,GO:0090174,GO:0097159,GO:0097367,GO:0097708,GO:0098533,GO:0098588,GO:0098796,GO:0098797,GO:0098805,GO:0098827,GO:0098852,GO:1901265,GO:1901363,GO:1902494,GO:1902495,GO:1904680,GO:1904949,GO:1990351,GO:1990668
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0058@2759
EC3.6.3.44
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko04090,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAAA ATPase domain protein
Ec32 orthologEc-23_002050.1
Exons3
Model size896
Cds size822
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13843.3049.1prot_H-canaliculatus_F_contig13843.3049.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13843 390..2551 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929125.5797713-CDS-H-canaliculatus_F_contig13843:389..4931622929125.5797713-CDS-H-canaliculatus_F_contig13843:389..493Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13843 390..493 +
1696845687.9783108-CDS-H-canaliculatus_F_contig13843:389..4931696845687.9783108-CDS-H-canaliculatus_F_contig13843:389..493Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13843 390..493 +
1622929125.5953948-CDS-H-canaliculatus_F_contig13843:1038..12271622929125.5953948-CDS-H-canaliculatus_F_contig13843:1038..1227Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13843 1039..1227 +
1696845687.992623-CDS-H-canaliculatus_F_contig13843:1038..12271696845687.992623-CDS-H-canaliculatus_F_contig13843:1038..1227Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13843 1039..1227 +
1622929125.6084566-CDS-H-canaliculatus_F_contig13843:2022..25511622929125.6084566-CDS-H-canaliculatus_F_contig13843:2022..2551Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13843 2023..2551 +
1696845688.004347-CDS-H-canaliculatus_F_contig13843:2022..25511696845688.004347-CDS-H-canaliculatus_F_contig13843:2022..2551Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13843 2023..2551 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929125.6229243-UTR-H-canaliculatus_F_contig13843:2551..26251622929125.6229243-UTR-H-canaliculatus_F_contig13843:2551..2625Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13843 2552..2625 +
1696845688.0134046-UTR-H-canaliculatus_F_contig13843:2551..26251696845688.0134046-UTR-H-canaliculatus_F_contig13843:2551..2625Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13843 2552..2625 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13843.3049.1

>prot_H-canaliculatus_F_contig13843.3049.1 ID=prot_H-canaliculatus_F_contig13843.3049.1|Name=mRNA_H-canaliculatus_F_contig13843.3049.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=274bp
MIDNVVEGGEEDDFRRSTVYLVLAAVACAIFSGTRGGIFTVVGARVNVRV
RRRLFESLVRQEIGFFDTTKTGDLTSRLASDCTKIGDQVTLNVNVFLRNF
VMVVVTLLFMFYLSWRLSLVAFISVPAIVTVSKWYGQYIRNLSKLSQASS
PRRCWWARLAPGTPCRPLYLISALAVAYRRTFLELLCPPFSTTVPLLLPS
IAATAKADRSRATPLLGAARRIRRPLRKADSCPRPTRGKRGLLTLGRSRP
ALSLPSAFGRTSWRKRDPWRRRA*
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mRNA from alignment at H-canaliculatus_F_contig13843:390..2625+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13843.3049.1 ID=mRNA_H-canaliculatus_F_contig13843.3049.1|Name=mRNA_H-canaliculatus_F_contig13843.3049.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2236bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13843:390..2625+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATCGACAACGTCGTGGAAGGGGGGGAAGAGGACGACTTCCGGAGGTC
GACGGTCTACCTCGTTCTGGCGGCGGTTGCCTGCGCCATCTTCTCGGGGA
CCAGGTCGGCGCAGGAAAAGAAACGAGGCGATCGCAATGTGTCTATTCTC
CCGTCTCGGATAAAGTCGTGTTCGGCGATTATCGTCCCTCTGGTCGTTGG
GAATGGTTGAACTACGCAAAAGGGGTACCCTCGGAAGACAGGACTGGTTT
CGTTTTAGTTGTGTTTCTCCCATCGAGAGGCCGATGCTCCGGCTGGGTAA
TATATATATATATACACACATGTACCGATACGAGAGCTACTATGAAAGGC
TACGAGATGCTTTTCTTTCAGATCTAGAACGATATCTTCTTGTTTTAGTA
AAACACGTCAACAACACCGAAGGATACCCACCTGATTTTTTTTTGTCTCT
CGTCCGGTAGCAACTCAGATGTGTCGAGTCTCCTCGCGGCTAGGATAAGC
TCCTCGTCGGGAAATCGAAGCTACGCCAATGAATGACCGTAACGTTTCGA
TACCATGCTGGAAGCATCACGAAGGCTTTTCGAGCTCACCTCTGTTCGTC
AATCGCGTCTCCCTCTTCCTCTCTCCCGGGGGTTTCCCGGCGCCACCAGA
GGAGGCATTTTCACGGTCGTTGGGGCCAGGGTGAACGTCCGGGTACGGAG
GCGCCTGTTCGAGTCGCTGGTACGGCAGGAGATCGGGTTCTTCGACACCA
CCAAGACCGGCGACCTCACCAGCAGGCTCGCTTCCGACTGCACCAAGATC
GGAGACCAGGTCACGCTCAACGTGAACGTGTTCTTGAGGTCGGTCCTTCA
CGCCGCCCATTTGTTTTATCGGGTTTGTTGCTCCCCCCCCCGTCTTGTGC
ATAGCCTTCTTTTTCTTTCTGTCTTTTTTTTTCAATCCACGACGCCGCTT
TCGCTTTGTTTTTGCTGCCACTGCTCTGTTTATTCTCTTCTTCCTTCCGG
GTCAGCGCTGCTGCTACTGCGCCGCCGCCGAAGCTGTCTCCGCTCTCTTT
GGAACTCCGCGGTACACCCTCCCGTTTTCAAACCGCCGTTGATCCCGTTC
ATCTTGTGTCGGAAATCTCTACCTCTCTCTCTGTATACATGTCCTTCGCA
GGTGCTTTTTCCACGGCTTGTCTCTCGCCACTTTTCTCCAAACTGAAGGT
TTAAAAAAAAAACTCATCCCAAGAGAATGTCCTTTCAGTGTAATCAACGT
GTTTTCCTGCAAAGCGCTCGTGGCACGCACCTCGAACACTCCAACCCACA
GCTATGACTACAAGTACGCTACACGCGAGGAATGAATGAATGAAGAGAAA
AGTCAGTCGCTTTTCAACAGAGGGTATTTCGTCCGCGTCGTCAATGTTAT
TTCTCGTTGAAAAGCACCTCTGGCGCACCACGAAAAGGCTAGCTCACGAG
TCTCGCGGTTCGGCCGACGACCGAACAGACCCAAACAACTTCAATGAACC
CTCATCGTTTGGAGCTCAACAGAAGCCTCGAGCTACGCCTCTCACGACGT
ACCTCGGGAGGCGCTCCCTCGATGTTGTTAATGTTTTCCTCGAAGACCTT
ACGATAAAACTCTGTTCTCGGTCCCCTTTTCAGGAATTTCGTGATGGTGG
TGGTGACGCTGCTCTTCATGTTCTACCTTTCGTGGCGGCTGTCCCTCGTG
GCCTTCATCTCCGTCCCCGCCATCGTCACGGTGTCCAAGTGGTACGGCCA
GTACATCAGGAACCTCTCCAAGCTCTCGCAGGCGAGCTCTCCTCGGCGCT
GCTGGTGGGCCCGGCTCGCGCCTGGCACGCCGTGTCGACCTCTCTATCTT
ATTTCCGCCCTTGCCGTCGCCTACCGTCGAACATTCCTCGAGCTATTATG
CCCTCCGTTTTCCACGACCGTACCGTTGCTGCTGCCGTCCATCGCCGCGA
CGGCAAAAGCCGATCGGTCTCGGGCGACGCCCCTTCTTGGCGCGGCCCGG
AGAATTCGCCGACCCCTGAGGAAGGCGGATAGCTGTCCGCGGCCGACGCG
AGGGAAGCGCGGGCTGTTGACGCTCGGTCGTTCCCGCCCTGCCCTGTCGT
TGCCGTCCGCTTTCGGCAGGACAAGCTGGCGGAAGCGGGATCCGTGGCGG
AGGAGAGCCTGAGCAGCATGAGCACGGTGCGGTCGTTCGCGGCAGAGGAG
AGGGAGAGCAAGGAATACGCCCGCAAGCTGCAGGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13843:390..2625+

>mRNA_H-canaliculatus_F_contig13843.3049.1 ID=mRNA_H-canaliculatus_F_contig13843.3049.1|Name=mRNA_H-canaliculatus_F_contig13843.3049.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1644bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13843:390..2625+ (Hapterophycus canaliculatus Oshoro5f female)
ATGATCGACAACGTCGTGGAAGGGGGGGAAGAGGACGACTTCCGGAGGTC
GACGGTCTACCTCGTTCTGGCGGCGGTTGCCTGCGCCATCTTCTCGGGGA
CCAGATGATCGACAACGTCGTGGAAGGGGGGGAAGAGGACGACTTCCGGA
GGTCGACGGTCTACCTCGTTCTGGCGGCGGTTGCCTGCGCCATCTTCTCG
GGGACCAGAGGAGGCATTTTCACGGTCGTTGGGGCCAGGGTGAACGTCCG
GGTACGGAGGCGCCTGTTCGAGTCGCTGGTACGGCAGGAGATCGGGTTCT
TCGACACCACCAAGACCGGCGACCTCACCAGCAGGCTCGCTTCCGACTGC
ACCAAGATCGGAGACCAGGTCACGCTCAACGTGAACGTGTTCTTGAGAGG
AGGCATTTTCACGGTCGTTGGGGCCAGGGTGAACGTCCGGGTACGGAGGC
GCCTGTTCGAGTCGCTGGTACGGCAGGAGATCGGGTTCTTCGACACCACC
AAGACCGGCGACCTCACCAGCAGGCTCGCTTCCGACTGCACCAAGATCGG
AGACCAGGTCACGCTCAACGTGAACGTGTTCTTGAGGAATTTCGTGATGG
TGGTGGTGACGCTGCTCTTCATGTTCTACCTTTCGTGGCGGCTGTCCCTC
GTGGCCTTCATCTCCGTCCCCGCCATCGTCACGGTGTCCAAGTGGTACGG
CCAGTACATCAGGAACCTCTCCAAGCTCTCGCAGGCGAGCTCTCCTCGGC
GCTGCTGGTGGGCCCGGCTCGCGCCTGGCACGCCGTGTCGACCTCTCTAT
CTTATTTCCGCCCTTGCCGTCGCCTACCGTCGAACATTCCTCGAGCTATT
ATGCCCTCCGTTTTCCACGACCGTACCGTTGCTGCTGCCGTCCATCGCCG
CGACGGCAAAAGCCGATCGGTCTCGGGCGACGCCCCTTCTTGGCGCGGCC
CGGAGAATTCGCCGACCCCTGAGGAAGGCGGATAGCTGTCCGCGGCCGAC
GCGAGGGAAGCGCGGGCTGTTGACGCTCGGTCGTTCCCGCCCTGCCCTGT
CGTTGCCGTCCGCTTTCGGCAGGACAAGCTGGCGGAAGCGGGATCCGTGG
CGGAGGAGAGCCTGAGAATTTCGTGATGGTGGTGGTGACGCTGCTCTTCA
TGTTCTACCTTTCGTGGCGGCTGTCCCTCGTGGCCTTCATCTCCGTCCCC
GCCATCGTCACGGTGTCCAAGTGGTACGGCCAGTACATCAGGAACCTCTC
CAAGCTCTCGCAGGCGAGCTCTCCTCGGCGCTGCTGGTGGGCCCGGCTCG
CGCCTGGCACGCCGTGTCGACCTCTCTATCTTATTTCCGCCCTTGCCGTC
GCCTACCGTCGAACATTCCTCGAGCTATTATGCCCTCCGTTTTCCACGAC
CGTACCGTTGCTGCTGCCGTCCATCGCCGCGACGGCAAAAGCCGATCGGT
CTCGGGCGACGCCCCTTCTTGGCGCGGCCCGGAGAATTCGCCGACCCCTG
AGGAAGGCGGATAGCTGTCCGCGGCCGACGCGAGGGAAGCGCGGGCTGTT
GACGCTCGGTCGTTCCCGCCCTGCCCTGTCGTTGCCGTCCGCTTTCGGCA
GGACAAGCTGGCGGAAGCGGGATCCGTGGCGGAGGAGAGCCTGA
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