mRNA_H-canaliculatus_F_contig1384.3048.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1384.3048.1
Unique NamemRNA_H-canaliculatus_F_contig1384.3048.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1384.3048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1384contigH-canaliculatus_F_contig1384:25810..26254 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size445
Cds size348
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929125.5043745-CDS-H-canaliculatus_F_contig1384:25809..261571622929125.5043745-CDS-H-canaliculatus_F_contig1384:25809..26157Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1384 25810..26157 +
1696845687.9588065-CDS-H-canaliculatus_F_contig1384:25809..261571696845687.9588065-CDS-H-canaliculatus_F_contig1384:25809..26157Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1384 25810..26157 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929125.5203154-UTR-H-canaliculatus_F_contig1384:26157..262541622929125.5203154-UTR-H-canaliculatus_F_contig1384:26157..26254Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1384 26158..26254 +
1696845687.9685762-UTR-H-canaliculatus_F_contig1384:26157..262541696845687.9685762-UTR-H-canaliculatus_F_contig1384:26157..26254Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1384 26158..26254 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1384.3048.1prot_H-canaliculatus_F_contig1384.3048.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1384 25810..26157 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1384.3048.1

>prot_H-canaliculatus_F_contig1384.3048.1 ID=prot_H-canaliculatus_F_contig1384.3048.1|Name=mRNA_H-canaliculatus_F_contig1384.3048.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=116bp
VGDWLRTVVRRSIKCRGRVIFGDCVCKGEQPPRVCDSRLPVLSRRCSRPS
LRILMIGTVSLLKRTLREDVSLQEEEIGNHLPMYPLACTCTELFYPLVPV
GGGKVYVPPAFRSCM*
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mRNA from alignment at H-canaliculatus_F_contig1384:25810..26254+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1384.3048.1 ID=mRNA_H-canaliculatus_F_contig1384.3048.1|Name=mRNA_H-canaliculatus_F_contig1384.3048.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=445bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1384:25810..26254+ (Hapterophycus canaliculatus Oshoro5f female)
GTGGGCGACTGGTTGCGTACGGTCGTGCGGCGGTCCATCAAGTGTAGGGG
GCGTGTCATCTTTGGGGATTGTGTTTGCAAAGGAGAGCAGCCACCTCGCG
TGTGTGATTCTCGACTTCCTGTCTTGTCTCGGAGATGCAGCCGTCCAAGT
CTTCGAATCCTTATGATCGGGACGGTCTCGCTTCTTAAGCGGACTCTTCG
GGAGGATGTTTCGCTACAAGAGGAGGAGATCGGGAACCACCTACCGATGT
ACCCACTCGCTTGCACTTGCACTGAGCTTTTTTACCCTTTGGTTCCTGTT
GGGGGGGGAAAGGTCTATGTACCTCCCGCGTTTCGGTCCTGCATGTAGGG
TACCTTTTGATTTCTCGTGTAGTCGTCAAAAACAGTACTTTTGGGGGAAT
AGCAAAACCTGGAGAGGACCAAATGTAGATCTGACGGCTTCTGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1384:25810..26254+

>mRNA_H-canaliculatus_F_contig1384.3048.1 ID=mRNA_H-canaliculatus_F_contig1384.3048.1|Name=mRNA_H-canaliculatus_F_contig1384.3048.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=696bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1384:25810..26254+ (Hapterophycus canaliculatus Oshoro5f female)
GTGGGCGACTGGTTGCGTACGGTCGTGCGGCGGTCCATCAAGTGTAGGGG
GCGTGTCATCTTTGGGGATTGTGTTTGCAAAGGAGAGCAGCCACCTCGCG
TGTGTGATTCTCGACTTCCTGTCTTGTCTCGGAGATGCAGCCGTCCAAGT
CTTCGAATCCTTATGATCGGGACGGTCTCGCTTCTTAAGCGGACTCTTCG
GGAGGATGTTTCGCTACAAGAGGAGGAGATCGGGAACCACCTACCGATGT
ACCCACTCGCTTGCACTTGCACTGAGCTTTTTTACCCTTTGGTTCCTGTT
GGGGGGGGAAAGGTCTATGTACCTCCCGCGTTTCGGTCCTGCATGTAGGT
GGGCGACTGGTTGCGTACGGTCGTGCGGCGGTCCATCAAGTGTAGGGGGC
GTGTCATCTTTGGGGATTGTGTTTGCAAAGGAGAGCAGCCACCTCGCGTG
TGTGATTCTCGACTTCCTGTCTTGTCTCGGAGATGCAGCCGTCCAAGTCT
TCGAATCCTTATGATCGGGACGGTCTCGCTTCTTAAGCGGACTCTTCGGG
AGGATGTTTCGCTACAAGAGGAGGAGATCGGGAACCACCTACCGATGTAC
CCACTCGCTTGCACTTGCACTGAGCTTTTTTACCCTTTGGTTCCTGTTGG
GGGGGGAAAGGTCTATGTACCTCCCGCGTTTCGGTCCTGCATGTAG
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