mRNA_H-canaliculatus_F_contig13837.3046.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13837.3046.1
Unique NamemRNA_H-canaliculatus_F_contig13837.3046.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13837.3046.1 vs. uniprot
Match: A0A6H5L9W7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9W7_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 1.020e-32
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 MSPAMASWASQQLKRMNGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEVSSFATEFLQRKQQG 195
            MSPAMASWASQQLK+M+GKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEVSSFATEFLQRKQQG
Sbjct:  558 MSPAMASWASQQLKKMSGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEVSSFATEFLQRKQQG 622
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13837.3046.1 vs. uniprot
Match: A0A835ZDV0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDV0_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 4.770e-24
Identity = 44/63 (69.84%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    1 MSPAMASWASQQLKRMNGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEVSSFATEFLQRKQ 189
            M P MA+WA  +LK++ G +D+TLL+FCMS TDASE+R+ LAAYLGSTP+VSSFAT FLQRKQ
Sbjct:    3 MPPDMAAWAQAELKKLGGGEDITLLDFCMSSTDASEVREVLAAYLGSTPQVSSFATNFLQRKQ 65
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13837.3046.1 vs. uniprot
Match: A0A7S2LIW4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LIW4_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 1.020e-20
Identity = 37/59 (62.71%), Postives = 50/59 (84.75%), Query Frame = 1 
Query:    1 MSPAMASWASQQLKRMNGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEVSSFATEFL 177
            M+P M  W   Q++++NG DDLTL+ FCM+LTD+ EIRQYL+AYLGSTP+V++FATEF+
Sbjct:  108 MTPTMEKWCKDQMQKLNGSDDLTLVTFCMTLTDSDEIRQYLSAYLGSTPQVNNFATEFI 166
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13837.3046.1 vs. uniprot
Match: A0A7S1CZA9_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CZA9_CYCTE)

HSP 1 Score: 91.3 bits (225), Expect = 1.480e-20
Identity = 40/65 (61.54%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:    1 MSPAMASWASQQLKRMNGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEVSSFATEFLQRKQQG 195
            MSPA+ SW  +Q+ ++NG DDLTL+ FCM+LTD  EIRQYL AYLGSTP+V +FATEF+ ++  G
Sbjct:  228 MSPALESWCKEQMTKLNGSDDLTLVAFCMTLTDPVEIRQYLTAYLGSTPQVGNFATEFISKRGLG 292
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13837.3046.1 vs. uniprot
Match: A0A7S2RY64_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RY64_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 4.390e-20
Identity = 39/62 (62.90%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 MSPAMASWASQQLKRMNGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEVSSFATEFLQRK 186
            M+PA+ +W  +Q++++NG DDLTL+ FCM+LTD  EIRQYL AYLGSTP+V+SFATEF+  K
Sbjct:  585 MTPALEAWCREQMRKLNGSDDLTLVAFCMTLTDTVEIRQYLTAYLGSTPQVNSFATEFINHK 646
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13837.3046.1 vs. uniprot
Match: A0A7S1CYS2_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CYS2_CYCTE)

HSP 1 Score: 91.3 bits (225), Expect = 5.960e-20
Identity = 40/65 (61.54%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:    1 MSPAMASWASQQLKRMNGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEVSSFATEFLQRKQQG 195
            MSPA+ SW  +Q+ ++NG DDLTL+ FCM+LTD  EIRQYL AYLGSTP+V +FATEF+ ++  G
Sbjct:  539 MSPALESWCKEQMTKLNGSDDLTLVAFCMTLTDPVEIRQYLTAYLGSTPQVGNFATEFISKRGLG 603
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13837.3046.1 vs. uniprot
Match: A0A7S2EIP2_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EIP2_TRICV)

HSP 1 Score: 85.5 bits (210), Expect = 1.850e-19
Identity = 35/62 (56.45%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 MSPAMASWASQQLKRMNGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEVSSFATEFLQRK 186
            MSPA+ +W  +Q+++++G +DLTL+ FCM+L+D  EIRQYL AYLG+TP+V++FA EF+ RK
Sbjct:   85 MSPALENWCKEQMRKISGSEDLTLVSFCMTLSDPVEIRQYLTAYLGTTPQVNNFAAEFINRK 146
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13837.3046.1 vs. uniprot
Match: A0A7S0CDA8_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CDA8_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.100e-19
Identity = 40/65 (61.54%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:    1 MSPAMASWASQQLKRMNGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEVSSFATEFLQRKQQG 195
            MSP++ +W   QL+++ G DDLTL+ FCM+L D  EI+QYLAAYLGSTP+V+SFATEF+ RK  G
Sbjct:  843 MSPSLENWCKDQLRKLAGGDDLTLVSFCMTLKDPEEIQQYLAAYLGSTPQVTSFATEFINRKNGG 907
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13837.3046.1 vs. uniprot
Match: A0A7S1GGJ9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1GGJ9_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 2.100e-19
Identity = 38/62 (61.29%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:    1 MSPAMASWASQQLKRMNGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEVSSFATEFLQRK 186
            M+  M  W   Q++++NG DDLTL+ FCM+LTD+ EIRQYL+AYLGSTP+V++FATEF++RK
Sbjct: 1016 MTSTMEKWCKDQMQKLNGSDDLTLVTFCMTLTDSDEIRQYLSAYLGSTPQVNNFATEFIKRK 1077
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13837.3046.1 vs. uniprot
Match: A0A7S1H1V4_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H1V4_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.710e-19
Identity = 36/65 (55.38%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    1 MSPAMASWASQQLKRMNGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPEVSSFATEFLQRKQQG 195
            MS  + SW   Q++++NG DDLTL+ FCM+L D +EI+QYL AYLGSTP+V++FATEF+ ++  G
Sbjct:  119 MSTTLESWCKDQMRKLNGSDDLTLVSFCMTLNDPAEIKQYLTAYLGSTPQVNNFATEFINKRGLG 183
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13837.3046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9W7_9PHAE1.020e-3296.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZDV0_9STRA4.770e-2469.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2LIW4_9STRA1.020e-2062.71Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S1CZA9_CYCTE1.480e-2061.54Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2RY64_9STRA4.390e-2062.90Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S1CYS2_CYCTE5.960e-2061.54Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2EIP2_TRICV1.850e-1956.45Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S0CDA8_9STRA2.100e-1961.54Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S1GGJ9_9STRA2.100e-1961.29Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S1H1V4_9STRA2.710e-1955.38Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13837contigH-canaliculatus_F_contig13837:1588..2025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.2
Seed ortholog evalue1.5e-15
Seed eggNOG ortholog115417.EPrPW00000014203
KEGG rclassRC00002
KEGG koko:K01520,ko:K18730
KEGG ReactionR02100,R11896
KEGG Pathwayko00240,ko00983,ko01100,map00240,map00983,map01100
KEGG ModuleM00053
EggNOG free text desc.Source PGD
EggNOG OGs1MC9U@121069,KOG1862@1,KOG1862@2759
EC3.6.1.23
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size195
Cds size195
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929125.3679647-CDS-H-canaliculatus_F_contig13837:1587..17371622929125.3679647-CDS-H-canaliculatus_F_contig13837:1587..1737Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13837 1588..1737 +
1696845687.9104273-CDS-H-canaliculatus_F_contig13837:1587..17371696845687.9104273-CDS-H-canaliculatus_F_contig13837:1587..1737Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13837 1588..1737 +
1622929125.3860848-CDS-H-canaliculatus_F_contig13837:1980..20251622929125.3860848-CDS-H-canaliculatus_F_contig13837:1980..2025Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13837 1981..2025 +
1696845687.9280674-CDS-H-canaliculatus_F_contig13837:1980..20251696845687.9280674-CDS-H-canaliculatus_F_contig13837:1980..2025Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13837 1981..2025 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13837.3046.1prot_H-canaliculatus_F_contig13837.3046.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13837 1588..2025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13837.3046.1

>prot_H-canaliculatus_F_contig13837.3046.1 ID=prot_H-canaliculatus_F_contig13837.3046.1|Name=mRNA_H-canaliculatus_F_contig13837.3046.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=65bp
MSPAMASWASQQLKRMNGKDDLTLLEFCMSLTDASEIRQYLAAYLGSTPE
VSSFATEFLQRKQQG
back to top

mRNA from alignment at H-canaliculatus_F_contig13837:1588..2025+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13837.3046.1 ID=mRNA_H-canaliculatus_F_contig13837.3046.1|Name=mRNA_H-canaliculatus_F_contig13837.3046.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=438bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13837:1588..2025+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCCCCCGCCATGGCCAGCTGGGCGAGCCAGCAGCTCAAGAGGATGAA
CGGGAAGGACGACCTGACCCTGCTGGAGTTCTGCATGTCCCTCACCGACG
CCTCCGAGATCAGGCAGTACCTGGCCGCGTACCTCGGCTCGACCCCCGAG
GTGACCGTTTTTGTGCCTCTCGAAAGAGTCAGGCGCGCACGCGCGTCGTA
CTTGTAGCACAGGTGTGGTTGATTCGCGGCCCAGGGTCCCCGCCTGGGGA
GGCGTTTTTGTTTCGCCGTCGGTTGTGGTCCAGGTCGTGCCTGCGCCCCC
GAACGCGCCGTTTGGCGTCATGCTGCCAATTGCTCGCTTGCGTGTTCTAC
CCGTCTGCTGACTCGGTCGTGTACGTTTTTTGTGCCGTTCCAGGTTTCTT
CCTTCGCCACTGAGTTCCTGCAGCGCAAGCAGCAGGGC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13837:1588..2025+

>mRNA_H-canaliculatus_F_contig13837.3046.1 ID=mRNA_H-canaliculatus_F_contig13837.3046.1|Name=mRNA_H-canaliculatus_F_contig13837.3046.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=390bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13837:1588..2025+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTCCCCCGCCATGGCCAGCTGGGCGAGCCAGCAGCTCAAGAGGATGAA
CGGGAAGGACGACCTGACCCTGCTGGAGTTCTGCATGTCCCTCACCGACG
CCTCCGAGATCAGGCAGTACCTGGCCGCGTACCTCGGCTCGACCCCCGAG
ATGTCCCCCGCCATGGCCAGCTGGGCGAGCCAGCAGCTCAAGAGGATGAA
CGGGAAGGACGACCTGACCCTGCTGGAGTTCTGCATGTCCCTCACCGACG
CCTCCGAGATCAGGCAGTACCTGGCCGCGTACCTCGGCTCGACCCCCGAG
GTTTCTTCCTTCGCCACTGAGTTCCTGCAGCGCAAGCAGCAGGGCGTTTC
TTCCTTCGCCACTGAGTTCCTGCAGCGCAAGCAGCAGGGC
back to top