mRNA_H-canaliculatus_F_contig1383.3044.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1383.3044.1
Unique NamemRNA_H-canaliculatus_F_contig1383.3044.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1383.3044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1383contigH-canaliculatus_F_contig1383:3464..3872 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size409
Cds size402
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929124.6467428-UTR-H-canaliculatus_F_contig1383:3463..34701622929124.6467428-UTR-H-canaliculatus_F_contig1383:3463..3470Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1383 3464..3470 +
1696845687.5307343-UTR-H-canaliculatus_F_contig1383:3463..34701696845687.5307343-UTR-H-canaliculatus_F_contig1383:3463..3470Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1383 3464..3470 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929124.664645-CDS-H-canaliculatus_F_contig1383:3470..38721622929124.664645-CDS-H-canaliculatus_F_contig1383:3470..3872Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1383 3471..3872 +
1696845687.5439086-CDS-H-canaliculatus_F_contig1383:3470..38721696845687.5439086-CDS-H-canaliculatus_F_contig1383:3470..3872Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1383 3471..3872 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1383.3044.1prot_H-canaliculatus_F_contig1383.3044.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1383 3471..3872 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1383.3044.1

>prot_H-canaliculatus_F_contig1383.3044.1 ID=prot_H-canaliculatus_F_contig1383.3044.1|Name=mRNA_H-canaliculatus_F_contig1383.3044.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=134bp
MGDCVPCFRRVSARLRPSAPEAWINMSKAVTRRQVLRLDRQRRRLRGATP
FAIRSATTGQPLRHGPSPQGVGRMAPDLSTQHRSGAGENVAPQTGLTAVC
RETEGRRPERRERADCLTCWCCPRRCRRHPAGR*
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mRNA from alignment at H-canaliculatus_F_contig1383:3464..3872+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1383.3044.1 ID=mRNA_H-canaliculatus_F_contig1383.3044.1|Name=mRNA_H-canaliculatus_F_contig1383.3044.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=409bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1383:3464..3872+ (Hapterophycus canaliculatus Oshoro5f female)
CCGAGGTATGGGGGATTGTGTACCTTGCTTCCGCCGGGTCTCTGCACGGC
TTCGCCCTTCAGCCCCAGAGGCGTGGATAAACATGTCGAAAGCAGTTACT
CGACGGCAAGTTTTGAGGCTCGATCGACAGCGCAGAAGACTGCGAGGAGC
TACACCATTCGCGATACGCTCGGCTACAACAGGACAACCACTTAGGCACG
GGCCATCACCCCAAGGGGTTGGTCGGATGGCTCCTGATCTTTCAACACAA
CACCGGAGCGGAGCCGGAGAGAACGTTGCTCCCCAGACGGGATTAACTGC
TGTTTGCCGTGAGACAGAAGGGCGGCGGCCGGAAAGGCGCGAACGTGCTG
ACTGCCTCACCTGTTGGTGTTGTCCCCGAAGATGTAGGCGCCATCCAGCA
GGTCGCTGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1383:3464..3872+

>mRNA_H-canaliculatus_F_contig1383.3044.1 ID=mRNA_H-canaliculatus_F_contig1383.3044.1|Name=mRNA_H-canaliculatus_F_contig1383.3044.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=804bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1383:3464..3872+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGGGGATTGTGTACCTTGCTTCCGCCGGGTCTCTGCACGGCTTCGCCC
TTCAGCCCCAGAGGCGTGGATAAACATGTCGAAAGCAGTTACTCGACGGC
AAGTTTTGAGGCTCGATCGACAGCGCAGAAGACTGCGAGGAGCTACACCA
TTCGCGATACGCTCGGCTACAACAGGACAACCACTTAGGCACGGGCCATC
ACCCCAAGGGGTTGGTCGGATGGCTCCTGATCTTTCAACACAACACCGGA
GCGGAGCCGGAGAGAACGTTGCTCCCCAGACGGGATTAACTGCTGTTTGC
CGTGAGACAGAAGGGCGGCGGCCGGAAAGGCGCGAACGTGCTGACTGCCT
CACCTGTTGGTGTTGTCCCCGAAGATGTAGGCGCCATCCAGCAGGTCGCT
GAATGGGGGATTGTGTACCTTGCTTCCGCCGGGTCTCTGCACGGCTTCGC
CCTTCAGCCCCAGAGGCGTGGATAAACATGTCGAAAGCAGTTACTCGACG
GCAAGTTTTGAGGCTCGATCGACAGCGCAGAAGACTGCGAGGAGCTACAC
CATTCGCGATACGCTCGGCTACAACAGGACAACCACTTAGGCACGGGCCA
TCACCCCAAGGGGTTGGTCGGATGGCTCCTGATCTTTCAACACAACACCG
GAGCGGAGCCGGAGAGAACGTTGCTCCCCAGACGGGATTAACTGCTGTTT
GCCGTGAGACAGAAGGGCGGCGGCCGGAAAGGCGCGAACGTGCTGACTGC
CTCACCTGTTGGTGTTGTCCCCGAAGATGTAGGCGCCATCCAGCAGGTCG
CTGA
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