mRNA_H-canaliculatus_F_contig13824.3039.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13824.3039.1
Unique NamemRNA_H-canaliculatus_F_contig13824.3039.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13824.3039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13824contigH-canaliculatus_F_contig13824:567..958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size393
Cds size312
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929124.0888934-UTR-H-canaliculatus_F_contig13824:566..6461622929124.0888934-UTR-H-canaliculatus_F_contig13824:566..646Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13824 567..646 +
1696845687.4257252-UTR-H-canaliculatus_F_contig13824:566..6461696845687.4257252-UTR-H-canaliculatus_F_contig13824:566..646Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13824 567..646 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929124.1021016-CDS-H-canaliculatus_F_contig13824:646..9581622929124.1021016-CDS-H-canaliculatus_F_contig13824:646..958Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13824 647..958 +
1696845687.436859-CDS-H-canaliculatus_F_contig13824:646..9581696845687.436859-CDS-H-canaliculatus_F_contig13824:646..958Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13824 647..958 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13824.3039.1prot_H-canaliculatus_F_contig13824.3039.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13824 647..958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13824.3039.1

>prot_H-canaliculatus_F_contig13824.3039.1 ID=prot_H-canaliculatus_F_contig13824.3039.1|Name=mRNA_H-canaliculatus_F_contig13824.3039.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=104bp
MWNLLLMAYRSALEFHRGHSAGPPRLRHDASPYFPRQKIMRGISVGAYLF
RKELLSRGNMDFVESALRLKQRFRCFCPVPASAKSCRMSHVVHGRSARQR
AQSV
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mRNA from alignment at H-canaliculatus_F_contig13824:567..958+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13824.3039.1 ID=mRNA_H-canaliculatus_F_contig13824.3039.1|Name=mRNA_H-canaliculatus_F_contig13824.3039.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=392bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13824:567..958+ (Hapterophycus canaliculatus Oshoro5f female)
GTCCGCGACCCCCCTGCTGTTCTCCAGAGGGTCAGGGGTGAGGAAAATAT
AGGCATGCGATTCGCTTTATCCAGATTGTTATGTGGAATCTTCTGTTGAT
GGCGTATCGGAGCGCGTTGGAGTTCCACCGGGGTCACTCAGCGGGGCCAC
CCAGATTGCGCCACGATGCTTCGCCTTACTTTCCGCGCCAGAAGATCATG
CGGGGGATTTCGGTAGGGGCGTACCTCTTTCGTAAGGAATTGCTTTCTCG
TGGGAACATGGATTTCGTCGAAAGTGCGCTCCGTCTAAAACAACGTTTTC
GATGCTTTTGTCCCGTCCCAGCGTCCGCCAAATCATGTAGGATGTCTCAC
GTAGTGCATGGGCGAAGCGCACGCCAGCGTGCTCAAAGCGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13824:567..958+

>mRNA_H-canaliculatus_F_contig13824.3039.1 ID=mRNA_H-canaliculatus_F_contig13824.3039.1|Name=mRNA_H-canaliculatus_F_contig13824.3039.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=624bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13824:567..958+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTGGAATCTTCTGTTGATGGCGTATCGGAGCGCGTTGGAGTTCCACCG
GGGTCACTCAGCGGGGCCACCCAGATTGCGCCACGATGCTTCGCCTTACT
TTCCGCGCCAGAAGATCATGCGGGGGATTTCGGTAGGGGCGTACCTCTTT
CGTAAGGAATTGCTTTCTCGTGGGAACATGGATTTCGTCGAAAGTGCGCT
CCGTCTAAAACAACGTTTTCGATGCTTTTGTCCCGTCCCAGCGTCCGCCA
AATCATGTAGGATGTCTCACGTAGTGCATGGGCGAAGCGCACGCCAGCGT
GCTCAAAGCGTGATGTGGAATCTTCTGTTGATGGCGTATCGGAGCGCGTT
GGAGTTCCACCGGGGTCACTCAGCGGGGCCACCCAGATTGCGCCACGATG
CTTCGCCTTACTTTCCGCGCCAGAAGATCATGCGGGGGATTTCGGTAGGG
GCGTACCTCTTTCGTAAGGAATTGCTTTCTCGTGGGAACATGGATTTCGT
CGAAAGTGCGCTCCGTCTAAAACAACGTTTTCGATGCTTTTGTCCCGTCC
CAGCGTCCGCCAAATCATGTAGGATGTCTCACGTAGTGCATGGGCGAAGC
GCACGCCAGCGTGCTCAAAGCGTG
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