mRNA_H-canaliculatus_F_contig13819.3035.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13819.3035.1
Unique NamemRNA_H-canaliculatus_F_contig13819.3035.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13819.3035.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13819contigH-canaliculatus_F_contig13819:228..806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size566
Cds size414
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13819.3035.1prot_H-canaliculatus_F_contig13819.3035.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13819 228..656 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929123.5129223-CDS-H-canaliculatus_F_contig13819:227..4491622929123.5129223-CDS-H-canaliculatus_F_contig13819:227..449Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13819 228..449 -
1696845687.1651042-CDS-H-canaliculatus_F_contig13819:227..4491696845687.1651042-CDS-H-canaliculatus_F_contig13819:227..449Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13819 228..449 -
1622929123.5269423-CDS-H-canaliculatus_F_contig13819:464..6561622929123.5269423-CDS-H-canaliculatus_F_contig13819:464..656Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13819 465..656 -
1696845687.174336-CDS-H-canaliculatus_F_contig13819:464..6561696845687.174336-CDS-H-canaliculatus_F_contig13819:464..656Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13819 465..656 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929123.538606-UTR-H-canaliculatus_F_contig13819:656..8061622929123.538606-UTR-H-canaliculatus_F_contig13819:656..806Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13819 657..806 -
1696845687.1877263-UTR-H-canaliculatus_F_contig13819:656..8061696845687.1877263-UTR-H-canaliculatus_F_contig13819:656..806Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13819 657..806 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13819.3035.1

>prot_H-canaliculatus_F_contig13819.3035.1 ID=prot_H-canaliculatus_F_contig13819.3035.1|Name=mRNA_H-canaliculatus_F_contig13819.3035.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=138bp
MCRRSSVLSGSPSRHSTHAALRGPLYRSVARRSSGSENHFSRKTPARVPL
CREGCSTSLASCSRCGLSARFRESVVVRRWCLGTRRHLFGDGGGDDSSLH
ATTCLTRRRPGARDDLYVEIYPDSNRKGNVDCPTRARR
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mRNA from alignment at H-canaliculatus_F_contig13819:228..806-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13819.3035.1 ID=mRNA_H-canaliculatus_F_contig13819.3035.1|Name=mRNA_H-canaliculatus_F_contig13819.3035.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=579bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13819:228..806- (Hapterophycus canaliculatus Oshoro5f female)
CCTCAGGAGGTGTTCCCGCGGTGTTGTTATGTATTTTTTTCGATAATATT
TACTTTTTAGTTCAAGTTTAGGTGCTTGCGCACCTTTTCTGCGGTTGGCG
CATCTGAGCAAGCGGCGGCGTCTGTCCGACTGTTGGCGCACGGTGCGCTG
ATGTGTCGTCGAAGCTCGGTCCTTTCGGGGTCGCCGTCTCGGCACTCCAC
GCACGCCGCTCTCCGGGGACCTCTGTACCGCAGCGTGGCGAGAAGATCAT
CCGGGAGCGAGAATCACTTTTCGCGCAAGACGCCTGCTCGTGTCCCTCTC
TGCCGGGAGGGTTGTAGCACCAGTCTCGCGAGTTGTTCCCGTGTGAGTGC
GTGGAAGTGCGGTTTGTCGGCTCGCTTTCGAGAGTCGGTTGTTGTGCGGC
GTTGGTGTCTGGGCACCCGGCGGCACCTCTTCGGCGATGGTGGCGGGGAT
GATTCTTCGCTCCACGCAACGACCTGCCTGACGAGGCGTCGCCCCGGAGC
ACGGGACGATTTGTACGTGGAGATCTATCCTGATTCAAACAGAAAAGGGA
ACGTCGATTGCCCCACAAGAGCGAGGAGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13819:228..806-

>mRNA_H-canaliculatus_F_contig13819.3035.1 ID=mRNA_H-canaliculatus_F_contig13819.3035.1|Name=mRNA_H-canaliculatus_F_contig13819.3035.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=828bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13819:228..806- (Hapterophycus canaliculatus Oshoro5f female)
ATGTGTCGTCGAAGCTCGGTCCTTTCGGGGTCGCCGTCTCGGCACTCCAC
GCACGCCGCTCTCCGGGGACCTCTGTACCGCAGCGTGGCGAGAAGATCAT
CCGGGAGCGAGAATCACTTTTCGCGCAAGACGCCTGCTCGTGTCCCTCTC
TGCCGGGAGGGTTGTAGCACCAGTCTCGCGAGTTGTTCCCGTATGTGTCG
TCGAAGCTCGGTCCTTTCGGGGTCGCCGTCTCGGCACTCCACGCACGCCG
CTCTCCGGGGACCTCTGTACCGCAGCGTGGCGAGAAGATCATCCGGGAGC
GAGAATCACTTTTCGCGCAAGACGCCTGCTCGTGTCCCTCTCTGCCGGGA
GGGTTGTAGCACCAGTCTCGCGAGTTGTTCCCGTTGCGGTTTGTCGGCTC
GCTTTCGAGAGTCGGTTGTTGTGCGGCGTTGGTGTCTGGGCACCCGGCGG
CACCTCTTCGGCGATGGTGGCGGGGATGATTCTTCGCTCCACGCAACGAC
CTGCCTGACGAGGCGTCGCCCCGGAGCACGGGACGATTTGTACGTGGAGA
TCTATCCTGATTCAAACAGAAAAGGGAACGTCGATTGCCCCACAAGAGCG
AGGAGATGCGGTTTGTCGGCTCGCTTTCGAGAGTCGGTTGTTGTGCGGCG
TTGGTGTCTGGGCACCCGGCGGCACCTCTTCGGCGATGGTGGCGGGGATG
ATTCTTCGCTCCACGCAACGACCTGCCTGACGAGGCGTCGCCCCGGAGCA
CGGGACGATTTGTACGTGGAGATCTATCCTGATTCAAACAGAAAAGGGAA
CGTCGATTGCCCCACAAGAGCGAGGAGA
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