mRNA_H-canaliculatus_F_contig13818.3034.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13818.3034.1
Unique NamemRNA_H-canaliculatus_F_contig13818.3034.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13818.3034.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13818contigH-canaliculatus_F_contig13818:2105..2310 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size198
Cds size195
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13818.3034.1prot_H-canaliculatus_F_contig13818.3034.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13818 2107..2310 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929123.4573212-UTR-H-canaliculatus_F_contig13818:2104..21061622929123.4573212-UTR-H-canaliculatus_F_contig13818:2104..2106Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13818 2105..2106 +
1696845687.1353083-UTR-H-canaliculatus_F_contig13818:2104..21061696845687.1353083-UTR-H-canaliculatus_F_contig13818:2104..2106Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13818 2105..2106 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929123.468723-CDS-H-canaliculatus_F_contig13818:2106..21811622929123.468723-CDS-H-canaliculatus_F_contig13818:2106..2181Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13818 2107..2181 +
1696845687.1451046-CDS-H-canaliculatus_F_contig13818:2106..21811696845687.1451046-CDS-H-canaliculatus_F_contig13818:2106..2181Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13818 2107..2181 +
1622929123.4798782-CDS-H-canaliculatus_F_contig13818:2190..23101622929123.4798782-CDS-H-canaliculatus_F_contig13818:2190..2310Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13818 2191..2310 +
1696845687.155237-CDS-H-canaliculatus_F_contig13818:2190..23101696845687.155237-CDS-H-canaliculatus_F_contig13818:2190..2310Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13818 2191..2310 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13818.3034.1

>prot_H-canaliculatus_F_contig13818.3034.1 ID=prot_H-canaliculatus_F_contig13818.3034.1|Name=mRNA_H-canaliculatus_F_contig13818.3034.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=65bp
MRQSTLLSFTRKMPQHVAAGSSPASAPQAESPLLSNDEESDVASADSTKS
VAGEQTTAGCTVTVA
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mRNA from alignment at H-canaliculatus_F_contig13818:2105..2310+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13818.3034.1 ID=mRNA_H-canaliculatus_F_contig13818.3034.1|Name=mRNA_H-canaliculatus_F_contig13818.3034.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=206bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13818:2105..2310+ (Hapterophycus canaliculatus Oshoro5f female)
CGATGAGGCAGAGTACCTTGCTGTCTTTCACAAGAAAAATGCCTCAGCAC
GTTGCAGCGGGGTCATCTCCTGCGTCGGCGCCGCAGGCGCCGCAGGCAGA
ATCGCCTTTGCTCTCCAACGACGAGGAGAGTGACGTAGCTTCGGCGGATT
CGACTAAGAGCGTCGCAGGAGAACAAACGACGGCGGGCTGCACGGTGACT
GTTGCA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13818:2105..2310+

>mRNA_H-canaliculatus_F_contig13818.3034.1 ID=mRNA_H-canaliculatus_F_contig13818.3034.1|Name=mRNA_H-canaliculatus_F_contig13818.3034.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=390bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13818:2105..2310+ (Hapterophycus canaliculatus Oshoro5f female)
ATGAGGCAGAGTACCTTGCTGTCTTTCACAAGAAAAATGCCTCAGCACGT
TGCAGCGGGGTCATCTCCTGCGTCGATGAGGCAGAGTACCTTGCTGTCTT
TCACAAGAAAAATGCCTCAGCACGTTGCAGCGGGGTCATCTCCTGCGTCG
GCGCCGCAGGCAGAATCGCCTTTGCTCTCCAACGACGAGGAGAGTGACGT
AGCTTCGGCGGATTCGACTAAGAGCGTCGCAGGAGAACAAACGACGGCGG
GCTGCACGGTGACTGTTGCAGCGCCGCAGGCAGAATCGCCTTTGCTCTCC
AACGACGAGGAGAGTGACGTAGCTTCGGCGGATTCGACTAAGAGCGTCGC
AGGAGAACAAACGACGGCGGGCTGCACGGTGACTGTTGCA
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