mRNA_H-canaliculatus_F_contig13805.3028.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13805.3028.1
Unique NamemRNA_H-canaliculatus_F_contig13805.3028.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13805.3028.1 vs. uniprot
Match: D7FXG5_ECTSI (Arginine/serine-rich splicing factor 6 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXG5_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 3.670e-29
Identity = 52/56 (92.86%), Postives = 55/56 (98.21%), Query Frame = 1 
Query:    1 LQDFGRQAGQVLYSDVFFRQGRRWGVIEYVSRDDMKNAIRSLDDTRLGGKYIRVRE 168
            L+DFGRQAGQVLYSDVFFRQGRRWGV+EYVSRDDMK AIR+LDDTRLGGKYIRVRE
Sbjct:  104 LKDFGRQAGQVLYSDVFFRQGRRWGVVEYVSRDDMKAAIRTLDDTRLGGKYIRVRE 159
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BLAST of mRNA_H-canaliculatus_F_contig13805.3028.1 vs. uniprot
Match: A0A1Y1ITP1_KLENI (RNA-binding protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1ITP1_KLENI)

HSP 1 Score: 65.9 bits (159), Expect = 4.360e-11
Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 1 
Query:    1 LQDFGRQAGQVLYSDVFFRQGRRWGVIEYVSRDDMKNAIRSLDDTRLGGKYIRVR 165
            L+DFGR+AG V Y+DVF  +G+  GVIEY SR+D++NA+R LD  RL G  + +R
Sbjct:  131 LKDFGREAGAVAYADVFRDRGKIQGVIEYQSREDVRNAVRKLDGVRLQGNTVYLR 185
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BLAST of mRNA_H-canaliculatus_F_contig13805.3028.1 vs. uniprot
Match: A0A7S0N5W6_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0N5W6_9CRYP)

HSP 1 Score: 57.8 bits (138), Expect = 1.120e-8
Identity = 27/58 (46.55%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    1 LQDFGRQAGQVLYSDVFFRQGRRWGVIEYVSRDDMKNAIRSLDDTRLGGKYIRVREVR 174
            L+DF R+AG  +++DVF  +G + GV+EY +RDD+  A+RSLD   L  + +RV E R
Sbjct:   85 LKDFARRAGHPVFTDVFHDRGGKVGVVEYKNRDDVYEAVRSLDGAVLHDRRVRVVEDR 142
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BLAST of mRNA_H-canaliculatus_F_contig13805.3028.1 vs. uniprot
Match: UPI001403F0A1 (serine/arginine-rich splicing factor 9 n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001403F0A1)

HSP 1 Score: 58.5 bits (140), Expect = 1.570e-8
Identity = 32/68 (47.06%), Postives = 41/68 (60.29%), Query Frame = 1 
Query:    1 LQDFGRQAGQVLYSDVFFRQGRRWGVIEYVSRDDMKNAIRSLDDTRLGGKYIRVREVRRPVDGGTVPS 204
            L+D  R+AG V Y+DVF R G   GV+EYV ++DMK A+R LDDT+          V   +DGG  PS
Sbjct:  130 LKDHMREAGDVCYADVF-RDGT--GVVEYVRKEDMKYAVRKLDDTKFKSHEGETSYVHVRIDGGRSPS 194
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BLAST of mRNA_H-canaliculatus_F_contig13805.3028.1 vs. uniprot
Match: UPI000A29E2EC (serine/arginine-rich splicing factor SR30 isoform X2 n=3 Tax=Camelineae TaxID=980083 RepID=UPI000A29E2EC)

HSP 1 Score: 57.8 bits (138), Expect = 3.850e-8
Identity = 31/60 (51.67%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:    1 LQDFGRQAGQVLYSDVFFRQGRRWGVIEYVSRDDMKNAIRSLDDTRLGGK----YIRVRE 168
            L+D  R+AG V +S+VF  +GR  GV++Y + DDMK AIR LDDT         YIRVRE
Sbjct:  125 LKDHMRKAGDVCFSEVFRDRGRMSGVVDYSNYDDMKYAIRKLDDTEFRNAFSRAYIRVRE 184
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BLAST of mRNA_H-canaliculatus_F_contig13805.3028.1 vs. uniprot
Match: A0A067H5H6_CITSI (Uncharacterized protein n=2 Tax=rosids TaxID=71275 RepID=A0A067H5H6_CITSI)

HSP 1 Score: 57.0 bits (136), Expect = 5.600e-8
Identity = 30/73 (41.10%), Postives = 41/73 (56.16%), Query Frame = 1 
Query:    1 LQDFGRQAGQVLYSDVFFRQGRRWGVIEYVSRDDMKNAIRSLDDTRLGGK----YIRVREVRRPVDGGTVPSR 207
            L+D  R+AG V +S VF       G+++Y + DDMK+AI+ LDD+         Y+RVRE     DG   PSR
Sbjct:  125 LKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHRRDGSQSPSR 197
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BLAST of mRNA_H-canaliculatus_F_contig13805.3028.1 vs. uniprot
Match: A0A0A9B5H3_ARUDO (Pre-mRNA-splicing factor SF2 n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9B5H3_ARUDO)

HSP 1 Score: 55.1 bits (131), Expect = 6.740e-8
Identity = 27/60 (45.00%), Postives = 38/60 (63.33%), Query Frame = 1 
Query:    1 LQDFGRQAGQVLYSDVFFRQGRRWGVIEYVSRDDMKNAIRSLDDTRLGGK----YIRVRE 168
            L+D  R+AG V +SDV+   G   G+++Y + DDMK AIR LDD++        Y+RVRE
Sbjct:   14 LKDHMRRAGDVCFSDVYREAGETIGIVDYTNYDDMKYAIRKLDDSQFRNAFSRVYVRVRE 73
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BLAST of mRNA_H-canaliculatus_F_contig13805.3028.1 vs. uniprot
Match: A0A067HGT2_CITSI (Uncharacterized protein n=2 Tax=Sapindales TaxID=41937 RepID=A0A067HGT2_CITSI)

HSP 1 Score: 57.0 bits (136), Expect = 7.820e-8
Identity = 30/73 (41.10%), Postives = 41/73 (56.16%), Query Frame = 1 
Query:    1 LQDFGRQAGQVLYSDVFFRQGRRWGVIEYVSRDDMKNAIRSLDDTRLGGK----YIRVREVRRPVDGGTVPSR 207
            L+D  R+AG V +S VF       G+++Y + DDMK+AI+ LDD+         Y+RVRE     DG   PSR
Sbjct:  124 LKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHRRDGSQSPSR 196
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BLAST of mRNA_H-canaliculatus_F_contig13805.3028.1 vs. uniprot
Match: V4U0M2_CITCL (Uncharacterized protein n=2 Tax=Citrus TaxID=2706 RepID=V4U0M2_CITCL)

HSP 1 Score: 57.0 bits (136), Expect = 7.860e-8
Identity = 30/73 (41.10%), Postives = 41/73 (56.16%), Query Frame = 1 
Query:    1 LQDFGRQAGQVLYSDVFFRQGRRWGVIEYVSRDDMKNAIRSLDDTRLGGK----YIRVREVRRPVDGGTVPSR 207
            L+D  R+AG V +S VF       G+++Y + DDMK+AI+ LDD+         Y+RVRE     DG   PSR
Sbjct:  125 LKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHRRDGSQSPSR 197
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BLAST of mRNA_H-canaliculatus_F_contig13805.3028.1 vs. uniprot
Match: V4TB61_CITCL (Uncharacterized protein n=12 Tax=Sapindales TaxID=41937 RepID=V4TB61_CITCL)

HSP 1 Score: 57.0 bits (136), Expect = 8.530e-8
Identity = 30/73 (41.10%), Postives = 41/73 (56.16%), Query Frame = 1 
Query:    1 LQDFGRQAGQVLYSDVFFRQGRRWGVIEYVSRDDMKNAIRSLDDTRLGGK----YIRVREVRRPVDGGTVPSR 207
            L+D  R+AG V +S VF       G+++Y + DDMK+AI+ LDD+         Y+RVRE     DG   PSR
Sbjct:  125 LKDHMRRAGDVCFSQVFRDGSGTTGIVDYTNYDDMKHAIKKLDDSEFRNAFSRAYVRVREYDHRRDGSQSPSR 197
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13805.3028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXG5_ECTSI3.670e-2992.86Arginine/serine-rich splicing factor 6 n=2 Tax=Ect... [more]
A0A1Y1ITP1_KLENI4.360e-1154.55RNA-binding protein n=1 Tax=Klebsormidium nitens T... [more]
A0A7S0N5W6_9CRYP1.120e-846.55Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
UPI001403F0A11.570e-847.06serine/arginine-rich splicing factor 9 n=1 Tax=Pet... [more]
UPI000A29E2EC3.850e-851.67serine/arginine-rich splicing factor SR30 isoform ... [more]
A0A067H5H6_CITSI5.600e-841.10Uncharacterized protein n=2 Tax=rosids TaxID=71275... [more]
A0A0A9B5H3_ARUDO6.740e-845.00Pre-mRNA-splicing factor SF2 n=1 Tax=Arundo donax ... [more]
A0A067HGT2_CITSI7.820e-841.10Uncharacterized protein n=2 Tax=Sapindales TaxID=4... [more]
V4U0M2_CITCL7.860e-841.10Uncharacterized protein n=2 Tax=Citrus TaxID=2706 ... [more]
V4TB61_CITCL8.530e-841.10Uncharacterized protein n=12 Tax=Sapindales TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13805contigH-canaliculatus_F_contig13805:1810..2435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue1.9e-22
Seed eggNOG ortholog2880.D7FXG5
Preferred nameNPL3
KEGG koko:K12893,ko:K12896,ko:K14651
KEGG Pathwayko03022,ko03040,ko05168,ko05202,map03022,map03040,map05168,map05202
GOsGO:0000122,GO:0000375,GO:0000377,GO:0000398,GO:0000993,GO:0001067,GO:0001069,GO:0001098,GO:0001099,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006412,GO:0006415,GO:0006417,GO:0006518,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008143,GO:0008150,GO:0008152,GO:0008380,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0017148,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0022411,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031369,GO:0031370,GO:0031503,GO:0031554,GO:0032268,GO:0032269,GO:0032784,GO:0032786,GO:0032968,GO:0032984,GO:0032991,GO:0033036,GO:0034243,GO:0034248,GO:0034249,GO:0034613,GO:0034641,GO:0034645,GO:0035770,GO:0036464,GO:0042886,GO:0043043,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043242,GO:0043244,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044877,GO:0045184,GO:0045292,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051028,GO:0051128,GO:0051129,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0051641,GO:0051649,GO:0060255,GO:0060567,GO:0065007,GO:0070063,GO:0070717,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1904594,GO:1990904,GO:2000112,GO:2000113,GO:2000804,GO:2000805,GO:2001141
EggNOG free text desc.RNA splicing
EggNOG OGsCOG0724@1,KOG0106@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03021,ko03041
Hectar predicted targeting categoryother localisation
Exons2
Model size222
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929122.7247283-CDS-H-canaliculatus_F_contig13805:1809..19581622929122.7247283-CDS-H-canaliculatus_F_contig13805:1809..1958Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13805 1810..1958 -
1696845686.7667725-CDS-H-canaliculatus_F_contig13805:1809..19581696845686.7667725-CDS-H-canaliculatus_F_contig13805:1809..1958Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13805 1810..1958 -
1622929122.7492352-CDS-H-canaliculatus_F_contig13805:2362..24351622929122.7492352-CDS-H-canaliculatus_F_contig13805:2362..2435Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13805 2363..2435 -
1696845686.7801547-CDS-H-canaliculatus_F_contig13805:2362..24351696845686.7801547-CDS-H-canaliculatus_F_contig13805:2362..2435Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13805 2363..2435 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13805.3028.1prot_H-canaliculatus_F_contig13805.3028.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13805 1810..2435 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13805.3028.1

>prot_H-canaliculatus_F_contig13805.3028.1 ID=prot_H-canaliculatus_F_contig13805.3028.1|Name=mRNA_H-canaliculatus_F_contig13805.3028.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=74bp
LQDFGRQAGQVLYSDVFFRQGRRWGVIEYVSRDDMKNAIRSLDDTRLGGK
YIRVREVRRPVDGGTVPSRFTEK*
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mRNA from alignment at H-canaliculatus_F_contig13805:1810..2435-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13805.3028.1 ID=mRNA_H-canaliculatus_F_contig13805.3028.1|Name=mRNA_H-canaliculatus_F_contig13805.3028.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=626bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13805:1810..2435- (Hapterophycus canaliculatus Oshoro5f female)
CTGCAGGACTTCGGGCGACAGGCAGGACAGGTGCTTTACAGCGACGTGTT
CTTCCGTCAGGGCCGCCGCTGGGGTAAGTGGCTTTCTCCCACGAGGGTGT
TAACACTCGTGGCATAGGCACCGGGGGCGGGTCGCGAGCGCGTAATTTTC
AATTTTCACCCCCAAGGCCTGATCGCACCGCTGGTTCTTCTGCGCGTGTG
CGGTGAAAAATATCGCAATCGCTGAGCCAACGACAGCCGAGGCGGATGAT
TTCCTTTTTTGTGTTTTTTTTGTCTTTTTTTTTTTCCGTTTTTAAGACAA
CCTCTGGAAGGAAGTCAAAGCAATTCCTCTAAGCCCCTACGTACTCTATC
TCAGAGGAGAGTTTTCCTTTGTTTTTGTTTTTCCTTCATTTCGTTTGTTC
TCGTGCTCCTTTTTCTATATTTTTTGTACGTCATTTTGTTTCCCTTCGTA
CCTTTGCCCGCTGCGTCTCTCGTGCAGGCGTTATTGAATACGTTTCTCGA
GACGACATGAAGAACGCCATCCGCTCTCTTGACGACACCCGGCTCGGTGG
CAAGTACATCCGCGTCAGGGAGGTGAGGAGGCCCGTGGATGGCGGAACTG
TTCCGTCCCGCTTCACGGAGAAATGA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13805:1810..2435-

>mRNA_H-canaliculatus_F_contig13805.3028.1 ID=mRNA_H-canaliculatus_F_contig13805.3028.1|Name=mRNA_H-canaliculatus_F_contig13805.3028.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=444bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13805:1810..2435- (Hapterophycus canaliculatus Oshoro5f female)
CTGCAGGACTTCGGGCGACAGGCAGGACAGGTGCTTTACAGCGACGTGTT
CTTCCGTCAGGGCCGCCGCTGGGCTGCAGGACTTCGGGCGACAGGCAGGA
CAGGTGCTTTACAGCGACGTGTTCTTCCGTCAGGGCCGCCGCTGGGGCGT
TATTGAATACGTTTCTCGAGACGACATGAAGAACGCCATCCGCTCTCTTG
ACGACACCCGGCTCGGTGGCAAGTACATCCGCGTCAGGGAGGTGAGGAGG
CCCGTGGATGGCGGAACTGTTCCGTCCCGCTTCACGGAGAAATGAGCGTT
ATTGAATACGTTTCTCGAGACGACATGAAGAACGCCATCCGCTCTCTTGA
CGACACCCGGCTCGGTGGCAAGTACATCCGCGTCAGGGAGGTGAGGAGGC
CCGTGGATGGCGGAACTGTTCCGTCCCGCTTCACGGAGAAATGA
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