mRNA_H-canaliculatus_F_contig13798.3022.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13798.3022.1
Unique NamemRNA_H-canaliculatus_F_contig13798.3022.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13798.3022.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13798contigH-canaliculatus_F_contig13798:79..2122 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size556
Cds size552
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13798.3022.1prot_H-canaliculatus_F_contig13798.3022.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13798 81..2122 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929121.0988524-CDS-H-canaliculatus_F_contig13798:80..1561622929121.0988524-CDS-H-canaliculatus_F_contig13798:80..156Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13798 81..156 -
1696845686.1778784-CDS-H-canaliculatus_F_contig13798:80..1561696845686.1778784-CDS-H-canaliculatus_F_contig13798:80..156Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13798 81..156 -
1622929121.123714-CDS-H-canaliculatus_F_contig13798:817..10471622929121.123714-CDS-H-canaliculatus_F_contig13798:817..1047Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13798 818..1047 -
1696845686.1867714-CDS-H-canaliculatus_F_contig13798:817..10471696845686.1867714-CDS-H-canaliculatus_F_contig13798:817..1047Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13798 818..1047 -
1622929121.1387706-CDS-H-canaliculatus_F_contig13798:1539..16351622929121.1387706-CDS-H-canaliculatus_F_contig13798:1539..1635Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13798 1540..1635 -
1696845686.1956263-CDS-H-canaliculatus_F_contig13798:1539..16351696845686.1956263-CDS-H-canaliculatus_F_contig13798:1539..1635Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13798 1540..1635 -
1622929121.1529126-CDS-H-canaliculatus_F_contig13798:1972..21221622929121.1529126-CDS-H-canaliculatus_F_contig13798:1972..2122Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13798 1973..2122 -
1696845686.2040133-CDS-H-canaliculatus_F_contig13798:1972..21221696845686.2040133-CDS-H-canaliculatus_F_contig13798:1972..2122Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13798 1973..2122 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13798.3022.1

>prot_H-canaliculatus_F_contig13798.3022.1 ID=prot_H-canaliculatus_F_contig13798.3022.1|Name=mRNA_H-canaliculatus_F_contig13798.3022.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=184bp
LVERLVAGVTDAKASAAVSAAILKNSATFVNAAKDAGATAVTTSLNEVLK
KEGAKLVAHGSTLAVAWKSSATEWKRAAKETQASALDSFATKVTDAVKNA
VKTEVAAALSAAQGSVRTETNGLLLPVTNMFGTTCQFILDQVNVLATNME
WQLGGLRDIIEAGQQGDDTGDDEADVPSPLAEVA
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mRNA from alignment at H-canaliculatus_F_contig13798:79..2122-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13798.3022.1 ID=mRNA_H-canaliculatus_F_contig13798.3022.1|Name=mRNA_H-canaliculatus_F_contig13798.3022.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2044bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13798:79..2122- (Hapterophycus canaliculatus Oshoro5f female)
CTGGTGGAAAGGCTGGTCGCGGGAGTCACGGATGCGAAGGCGTCAGCGGC
TGTCTCTGCTGCCATCCTCAAGAATTCCGCAACGTTTGTGAACGCTGCTA
AGGACGCCGGCGCCACGGCTGTGACAACATCCCTCAACGAGGTCCTGAAG
GTCGGTCACTGGCGTATCCGTTGGATAACACAAAATACCCACTCGTGCAA
TGCGGTTTTCGCCGTCACGAGATTCGAGCGCTGTTCGACGCCACCCTTCT
CGTCACGCCGAAGAGCCGTCATGTACCACACTCTAGTCTCTTGTCCCGGT
TTGTACCTGACGCCATCCCAAGAGGGGTTCGGTGGCCCACTCTCGGGGTA
GTTGTCCGTTCCTTGCTCCTTCGGAGGCGAAAAGTGATCTCAGATACAAC
TAGCTTTTGATCCGTGAGCGCGCATTCGCAGGGGAAAGATGAACATTTGC
CTGGTTGTCGCCCGCCGTGACACCTTTCCCGCTGCAGAAAGAGGGTGCCA
AGCTCGTCGCGCACGGGTCCACACTCGCTGTGGCGTGGAAGAGTTCGGCG
ACTGAGTGGAAAAGGGCCGCGAAGGAGACTCAGGTAACTTATTTGTCGTA
AAAAAAATTGAGGTTGGGGTCGAAGATAACATCGTATAGATTACGAACCC
CCCTCCCTCACCCCGCGGCGAGGGTGGAGACCAGTACAATTCAGATCTCC
CACACGCAACGGGAGGTTACCCGCTTCAAAAAGTGTCTGTTTTTGTGCGG
CGTGCTGAAACAAAGGTCAGGTAAACGCGACGAACGATGCGGTCACTGTG
TTGAGTTCGTCCGAACCCGTACCACATCCAAGACTTTGTTATGAACCAGG
CACTAGGAGCCGGGCGGGTCGTGGTTAGACCTTCGAATGGGTCTGGGATT
TTGCAAAAGAGGTTTCCGCTAAATGAGCTTGCCTGAAGGCGTAGTTTTTT
GCGATGATGGGCATGTAGACCAGGAGAAGATACTATCGTGTGCCGTGTTG
CGGGGTTTGTTGTCGGTGTGATTGTCGTCCTGATGTGTGACCTGCGCATT
GTACTTGACGTTCGTTCCTCCGCAGGCGTCAGCTCTGGATAGTTTTGCCA
CCAAGGTCACTGACGCAGTGAAAAATGCAGTCAAGACAGAGGTCGCCGCC
GCCTTGTCCGCAGCCCAGGGATCGGTCCGCACAGAAACGAATGGCTTGTT
GCTCCCGGTGACGAACATGTTCGGCACCACCTGCCAATTCATCTTGGACC
AGGTCAACGTGTTGGCTACGAACATGGAATGGCAGCTGGGGGGGTTGAGA
GACATGTGAGTCGAAGGTACCAAGGCGGGATCCAAAAGCCGGCTACTCCG
CAAGTCAATGGGAGGAAGAGCGGGGATGTAACACTTTATGGCAAACGACC
TCCCTTGCTGCTCTCGTCTGGCGTAGATATGGAAATATGTCAACACCACG
GCTCTGTGTATCAAAGATCAACAGAATGTGAAATTCTACTTATTTTGTCA
CCTGTTGATGAGCAGACTGGAGAAGTGCGTAGAGTTGGGTGATGGGTAGT
CGTGTATGTGGCGTCGCCATGGTTCCCGTTTTATTTGTCTTTGTCTTCGT
GTCACCCTGTCCTTTTTTCGTAGTTCTTTGACTTAATGGAGGGACATGGA
TCAGCGCGGATGTGCTCTGTCCATGTTAGCCCTCGTGTGTTGACGTTGTA
CGTGAACCTGCCCATATTTGTCCGTACTCATGACCTTCGACGTCCTCGAA
TGGGTTTTTTAAGTATGAGATCCTAAAACGTGTTGACGAAACGACGTATG
TGTTCGCGAATGTTGATTTTGTGTGTGTGGAATATGACTCGAGAAATGTA
CATTACCCGGTGAATGGATGTGTAAGGGTTGAACGTCTGCTCATTTGCCA
CGACGTGTAATTCTCGCTTCCCCTCCCTTTCGTCGTTGCCTTGTCCCCGG
CGCGCATGTCCAACAGCATCGAAGCAGGCCAGCAGGGAGACGACACGGGA
GACGACGAAGCCGATGTACCTTCGCCTCTTGCCGAGGTAGCTTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13798:79..2122-

>mRNA_H-canaliculatus_F_contig13798.3022.1 ID=mRNA_H-canaliculatus_F_contig13798.3022.1|Name=mRNA_H-canaliculatus_F_contig13798.3022.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1104bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13798:79..2122- (Hapterophycus canaliculatus Oshoro5f female)
CTGGTGGAAAGGCTGGTCGCGGGAGTCACGGATGCGAAGGCGTCAGCGGC
TGTCTCTGCTGCCATCCTCAAGAATTCCGCAACGTTTGTGAACGCTGCTA
AGGACGCCGGCGCCACGGCTGTGACAACATCCCTCAACGAGGTCCTGAAG
CTGGTGGAAAGGCTGGTCGCGGGAGTCACGGATGCGAAGGCGTCAGCGGC
TGTCTCTGCTGCCATCCTCAAGAATTCCGCAACGTTTGTGAACGCTGCTA
AGGACGCCGGCGCCACGGCTGTGACAACATCCCTCAACGAGGTCCTGAAG
AAAGAGGGTGCCAAGCTCGTCGCGCACGGGTCCACACTCGCTGTGGCGTG
GAAGAGTTCGGCGACTGAGTGGAAAAGGGCCGCGAAGGAGACTCAGAAAG
AGGGTGCCAAGCTCGTCGCGCACGGGTCCACACTCGCTGTGGCGTGGAAG
AGTTCGGCGACTGAGTGGAAAAGGGCCGCGAAGGAGACTCAGGCGTCAGC
TCTGGATAGTTTTGCCACCAAGGTCACTGACGCAGTGAAAAATGCAGTCA
AGACAGAGGTCGCCGCCGCCTTGTCCGCAGCCCAGGGATCGGTCCGCACA
GAAACGAATGGCTTGTTGCTCCCGGTGACGAACATGTTCGGCACCACCTG
CCAATTCATCTTGGACCAGGTCAACGTGTTGGCTACGAACATGGAATGGC
AGCTGGGGGGGTTGAGAGACATGCGTCAGCTCTGGATAGTTTTGCCACCA
AGGTCACTGACGCAGTGAAAAATGCAGTCAAGACAGAGGTCGCCGCCGCC
TTGTCCGCAGCCCAGGGATCGGTCCGCACAGAAACGAATGGCTTGTTGCT
CCCGGTGACGAACATGTTCGGCACCACCTGCCAATTCATCTTGGACCAGG
TCAACGTGTTGGCTACGAACATGGAATGGCAGCTGGGGGGGTTGAGAGAC
ATCATCGAAGCAGGCCAGCAGGGAGACGACACGGGAGACGACGAAGCCGA
TGTACCTTCGCCTCTTGCCGAGGTAGCTCATCGAAGCAGGCCAGCAGGGA
GACGACACGGGAGACGACGAAGCCGATGTACCTTCGCCTCTTGCCGAGGT
AGCT
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