mRNA_H-canaliculatus_F_contig13796.3021.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13796.3021.1
Unique NamemRNA_H-canaliculatus_F_contig13796.3021.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13796.3021.1 vs. uniprot
Match: D7FMN8_ECTSI (Survivin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMN8_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 6.950e-29
Identity = 58/62 (93.55%), Postives = 59/62 (95.16%), Query Frame = 2 
Query:    2 RQYWAAGTGYGHSGAAGEKWDVEAYLAAQREQDRLKEDLLQEIAYLMRPDERHTFSEFAANK 187
            RQYWAAGTGYGHSGAAGEKWDV+AYLAAQREQDRLKEDLLQEIAYLMRPDERH F EFAA K
Sbjct:  558 RQYWAAGTGYGHSGAAGEKWDVDAYLAAQREQDRLKEDLLQEIAYLMRPDERHAFPEFAALK 619
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BLAST of mRNA_H-canaliculatus_F_contig13796.3021.1 vs. uniprot
Match: A0A6H5JJC0_9PHAE (UBC core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJC0_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 3.230e-28
Identity = 57/62 (91.94%), Postives = 59/62 (95.16%), Query Frame = 2 
Query:    2 RQYWAAGTGYGHSGAAGEKWDVEAYLAAQREQDRLKEDLLQEIAYLMRPDERHTFSEFAANK 187
            RQYWAAGTGYGHSGAAGEKWDV+AYLAAQREQDRLKE+LLQEIAYLMRPDERH F EFAA K
Sbjct:  186 RQYWAAGTGYGHSGAAGEKWDVDAYLAAQREQDRLKENLLQEIAYLMRPDERHAFPEFAALK 247
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BLAST of mRNA_H-canaliculatus_F_contig13796.3021.1 vs. uniprot
Match: A0A7S2GDU6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GDU6_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 9.850e-7
Identity = 23/43 (53.49%), Postives = 31/43 (72.09%), Query Frame = 2 
Query:    2 RQYWAAGTGYGHSGAAGEKWDVEAYLAAQREQDRLKEDLLQEI 130
            + YWA GTG+GH       WDV A+ +AQRE+DRL +DLL++I
Sbjct:   23 KSYWAKGTGFGHQDGVSVGWDVNAWTSAQREKDRLVQDLLEQI 65
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BLAST of mRNA_H-canaliculatus_F_contig13796.3021.1 vs. uniprot
Match: A0A8J2SJ00_9STRA (Hypothetical protein n=3 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SJ00_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.770e-6
Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = 2 
Query:    2 RQYWAAGTGYGHSGAAGE-KWDVEAYLAAQREQDRLKEDLLQEI 130
            R YWAAGTGYGH  +     WDV+AYLAAQRE DRL  + L+E+
Sbjct:  329 RAYWAAGTGYGHDNSTTTVSWDVDAYLAAQRETDRLLSEALREV 372
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BLAST of mRNA_H-canaliculatus_F_contig13796.3021.1 vs. uniprot
Match: UPI000719A6C2 (baculoviral IAP repeat-containing protein 6-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719A6C2)

HSP 1 Score: 52.8 bits (125), Expect = 1.140e-5
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 2 
Query:    2 RQYWAAGTGYGHSGAAGEKWDVEAYLAAQREQDRLKEDLLQEI 130
            + YWAAGTGYGH+  +G  WDV AYLAAQ+E+D+  E +LQ++
Sbjct:  293 KDYWAAGTGYGHARRSG--WDVGAYLAAQKEKDKQIESVLQKL 333
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13796.3021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FMN8_ECTSI6.950e-2993.55Survivin n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
A0A6H5JJC0_9PHAE3.230e-2891.94UBC core domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S2GDU6_9STRA9.850e-753.49Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A8J2SJ00_9STRA1.770e-661.36Hypothetical protein n=3 Tax=Pelagomonas calceolat... [more]
UPI000719A6C21.140e-558.14baculoviral IAP repeat-containing protein 6-like n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13796contigH-canaliculatus_F_contig13796:60..964 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929121.0073416-CDS-H-canaliculatus_F_contig13796:59..2651622929121.0073416-CDS-H-canaliculatus_F_contig13796:59..265Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13796 60..265 -
1696845686.1582649-CDS-H-canaliculatus_F_contig13796:59..2651696845686.1582649-CDS-H-canaliculatus_F_contig13796:59..265Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13796 60..265 -
1622929121.033864-CDS-H-canaliculatus_F_contig13796:840..9641622929121.033864-CDS-H-canaliculatus_F_contig13796:840..964Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13796 841..964 -
1696845686.1686938-CDS-H-canaliculatus_F_contig13796:840..9641696845686.1686938-CDS-H-canaliculatus_F_contig13796:840..964Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13796 841..964 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13796.3021.1prot_H-canaliculatus_F_contig13796.3021.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13796 60..964 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13796.3021.1

>prot_H-canaliculatus_F_contig13796.3021.1 ID=prot_H-canaliculatus_F_contig13796.3021.1|Name=mRNA_H-canaliculatus_F_contig13796.3021.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=110bp
QAVLGGRHRLRAQRCCRGKMGRRSVLGRPKGAGPPQGRPSAGNRVSDETR
RATHFFGVRGQQSASEWEEHPTASVGPRWLWWWWREPRGRGGGGGGGERG
GRRSRRDCRR
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mRNA from alignment at H-canaliculatus_F_contig13796:60..964-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13796.3021.1 ID=mRNA_H-canaliculatus_F_contig13796.3021.1|Name=mRNA_H-canaliculatus_F_contig13796.3021.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=905bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13796:60..964- (Hapterophycus canaliculatus Oshoro5f female)
CAGGCAGTACTGGGCGGCAGGCACAGGCTACGGGCACAGCGGTGCTGCCG
GGGAAAAATGGGACGTCGAAGCGTACTTGGCCGCCCAAAGGGAGCAGGAC
CGCCTCAAGGAAGACCTTCTGCAGGTAACCGTTGCTGCTGCTGCTGTTGC
CGCTGCTGCTGCTGCTGCTGCTGCTGTCGATATTGGTATCCACGGACAAC
GGTGTTCGTGCTGGTGGTGGTGGTGGGGGTTTGTTCGTTGGCACGTTGGT
TGCTTATGGTGCGGGTGTTGTTGGTGCTGCTGTAGGCATGGCCTATGATA
GGAGTGACCATGATGCTCTTGTGTATTTGGCTGCGGGGATGTCGCTGTTG
CTATCGATGGTCGCGTTCGGAAGACATAAATGGTCGGCTCATCCCTCCCT
ATCTCTCCTGCTCGGCCGTCCACGCGTGGGACAAACACCCACCGGCTGCC
GTCTAGAGAAGAGGCACACGCACGAACGGCTCCGCATCTCGCCCTTTATT
CTCGGCCCTTTTCGCCTCCGTACCCGTACGACGCACGTCCCGCTTGGAGG
GAAGGAAGGAAACCGCCGGACCGATGAGCGCAAAGCCGATGCCGACGGTC
ACAAGCACGTTGGTCTGCGCGCGGCCCCGCTTACTCACCCCTCCCCCCCC
CTCCCCCCCGCCTCTCCATGCACGGAACCCCTGCCGTTTGCGCGAGTAGG
AAATCGCGTATCTGATGAGACCCGACGAGCGACACACTTTTTCGGAGTTC
GCGGCCAACAAAGCGCCTCCGAATGGGAGGAGCACCCCACCGCCTCCGTC
GGTCCAAGGTGGTTGTGGTGGTGGTGGCGCGAACCCAGAGGACGAGGTGG
AGGAGGAGGAGGAGGAGAGCGGGGGGGGAGACGATCGAGGCGCGACTGCC
GTAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13796:60..964-

>mRNA_H-canaliculatus_F_contig13796.3021.1 ID=mRNA_H-canaliculatus_F_contig13796.3021.1|Name=mRNA_H-canaliculatus_F_contig13796.3021.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=660bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13796:60..964- (Hapterophycus canaliculatus Oshoro5f female)
CAGGCAGTACTGGGCGGCAGGCACAGGCTACGGGCACAGCGGTGCTGCCG
GGGAAAAATGGGACGTCGAAGCGTACTTGGCCGCCCAAAGGGAGCAGGAC
CGCCTCAAGGAAGACCTTCTGCAGCAGGCAGTACTGGGCGGCAGGCACAG
GCTACGGGCACAGCGGTGCTGCCGGGGAAAAATGGGACGTCGAAGCGTAC
TTGGCCGCCCAAAGGGAGCAGGACCGCCTCAAGGAAGACCTTCTGCAGGA
AATCGCGTATCTGATGAGACCCGACGAGCGACACACTTTTTCGGAGTTCG
CGGCCAACAAAGCGCCTCCGAATGGGAGGAGCACCCCACCGCCTCCGTCG
GTCCAAGGTGGTTGTGGTGGTGGTGGCGCGAACCCAGAGGACGAGGTGGA
GGAGGAGGAGGAGGAGAGCGGGGGGGGAGACGATCGAGGCGCGACTGCCG
TAGGGAAATCGCGTATCTGATGAGACCCGACGAGCGACACACTTTTTCGG
AGTTCGCGGCCAACAAAGCGCCTCCGAATGGGAGGAGCACCCCACCGCCT
CCGTCGGTCCAAGGTGGTTGTGGTGGTGGTGGCGCGAACCCAGAGGACGA
GGTGGAGGAGGAGGAGGAGGAGAGCGGGGGGGGAGACGATCGAGGCGCGA
CTGCCGTAGG
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