mRNA_H-canaliculatus_F_contig1379.3018.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1379.3018.1
Unique NamemRNA_H-canaliculatus_F_contig1379.3018.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1379.3018.1 vs. uniprot
Match: D8LSZ0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSZ0_ECTSI)

HSP 1 Score: 301 bits (771), Expect = 2.160e-100
Identity = 160/219 (73.06%), Postives = 183/219 (83.56%), Query Frame = 1 
Query:  166 RSVGEMKDIINNELTSIYDRTEGEDDIREVLELENAMETECRRRETDARTLIRDAIERLDQQKQAIVEPSERAFVAKVRGIEQHRTQAASHIQEQAEEAAARERDIERMQVAVEETQEEIENTVDAHIMEMPRVQNSIGLYANVTRIKWNYETEGDITAGWLLPPGEGTGGKQTGGDGGAGPLAVIEGFQFDAAGKDDFEVANKLWDIIDGKARAMVEA 822
            R++ EM+DI+NN++  IYDRT G DD+REVLELE AME EC RRE DAR +IRD I+ L+Q+ +AIVEPSE+AFVA++R +E  R QAASHIQEQAEEAAARERDIERMQ  VE+TQ EIENTVDAH MEMPRVQN+IGLY N+TRIKWNYETEG+I AGWL+PP  G G K      GA   AV+EGFQFDAAGKDDFEVANKLWD+IDGKARAMVEA
Sbjct:    7 RTLEEMRDIVNNDMPQIYDRTAGVDDVREVLELEAAMEMECERREMDARAMIRDTIDVLEQRHRAIVEPSEQAFVARIRVVEHERAQAASHIQEQAEEAAARERDIERMQGEVEDTQTEIENTVDAHTMEMPRVQNAIGLYTNITRIKWNYETEGEIMAGWLVPPEAGVGMK------GANGTAVVEGFQFDAAGKDDFEVANKLWDVIDGKARAMVEA 219
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BLAST of mRNA_H-canaliculatus_F_contig1379.3018.1 vs. uniprot
Match: A0A835YM15_9STRA (Kinetochore protein Spc24 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM15_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.080e-6
Identity = 44/199 (22.11%), Postives = 87/199 (43.72%), Query Frame = 1 
Query:  202 ELTSIYDRTEGEDDIREVLELENAMETECRRRETDARTLIRDAIERLDQQKQAIVEPSERAFVAKVRGIEQHRTQAASHIQEQAEEAAARERDIERMQVAVEETQEEIENTVDAHIMEMPRVQNSIGLYANVTRIKWNYETEGDITAGWLLPPGEGTGGKQTGGDGGAGPLAVIEGFQFDAAGKDDFEVANKLWDIIDG 798
            EL S+++       I  +  LE  + + C  + T A+ +I+   ER+D  ++    P        +  +   ++++ S I     + A  E ++     ++ + ++    +   +  E+P+++ +  LYAN+TR+KW++        G++  P                    +  F  D A  D F +AN+LWDIIDG
Sbjct:   29 ELQSLHEDPSDAQSINSIRGLEAELRSMCLIKSTQAKDIIKAFTERVDTLERTSAPPDTEGHARTMDDLATAKSESESEITRLHSKLAETEAEVSETTESLGKVKKLAATSAREYWAELPQLKYANTLYANITRVKWDFTAPDGQLVGFVTQP----------------HTETVTSFSIDTAKGDRFAIANQLWDIIDG 211
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BLAST of mRNA_H-canaliculatus_F_contig1379.3018.1 vs. uniprot
Match: A0A7S1YQV0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YQV0_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 9.230e-6
Identity = 32/100 (32.00%), Postives = 53/100 (53.00%), Query Frame = 1 
Query:  517 EEIENTVDAHIMEMPRVQNSIGLYANVTRIKWNYETEGDITAGWLLPPGEGTGGKQTGGDGGAGPLAVIEGFQFDAAGKDDFEVANKLWDIIDGKARAMV 816
            E+I+    A I E+PR++  + LYA +T IKW+YE E ++ AG +    +G                +   F+ D     +F+VAN +W ++DGK+ A+V
Sbjct:  180 EKIDEVEAAKIKEVPRMKKQLSLYAAMTNIKWHYEKE-NVMAGEVAVLSQG----------------ICRRFEIDPMEHSEFDVANAVWSLMDGKSSAVV 262
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BLAST of mRNA_H-canaliculatus_F_contig1379.3018.1 vs. uniprot
Match: A0A7S3PP82_9STRA (Kinetochore protein Spc24 n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PP82_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.250e-5
Identity = 51/213 (23.94%), Postives = 96/213 (45.07%), Query Frame = 1 
Query:  178 EMKDIINNELTSIYDRTEGEDDIREVLELENAMETECRRRETDARTLIRDAIERLDQQKQAIVE--------PSERAFVAKVRGIEQHRTQAASHIQEQAEEAAARERDIERMQVAVEETQEEIENTVDAHIMEMPRVQNSIGLYANVTRIKWNYETEGDITAGWLLPPGEGTGGKQTGGDGGAGPLAVIEGFQFDAAGKDDFEVANKLWDII 792
            E K I+ + L  +Y + +  + + E ++L +++           + LIR+  + +D  KQ   E        P      +K++   +  T+   H ++   E  A E+ +E +Q+     QEE+E    A +   P +Q+ + LYAN+T+IKW++ +E   +   ++   EG G              V+  F +       FE+AN +WD+I
Sbjct:    9 ETKTILQD-LEELYQQNQDAERVGECIQLRDSITATYSEATDSVQDLIRNFSKEVDVLKQKAEELAGQPSSNPEIEELKSKIKQCGERYTEQQHHEKDIEAEVEALEKKMESLQLE----QEELEKKAAASV---PLMQHLLSLYANITKIKWDFSSE---SVAGVVSDAEGKG--------------VVRQFDYSLENHTSFELANNIWDVI 196
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1379.3018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LSZ0_ECTSI2.160e-10073.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YM15_9STRA1.080e-622.11Kinetochore protein Spc24 n=1 Tax=Tribonema minus ... [more]
A0A7S1YQV0_9STRA9.230e-632.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S3PP82_9STRA2.250e-523.94Kinetochore protein Spc24 n=2 Tax=Aplanochytrium s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1379contigH-canaliculatus_F_contig1379:9519..13004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_001940.1
Exons3
Model size825
Cds size666
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1379.3018.1prot_H-canaliculatus_F_contig1379.3018.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1379 9519..12845 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929120.5504117-CDS-H-canaliculatus_F_contig1379:9518..98481622929120.5504117-CDS-H-canaliculatus_F_contig1379:9518..9848Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1379 9519..9848 -
1696845685.971281-CDS-H-canaliculatus_F_contig1379:9518..98481696845685.971281-CDS-H-canaliculatus_F_contig1379:9518..9848Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1379 9519..9848 -
1622929120.5708477-CDS-H-canaliculatus_F_contig1379:10899..110691622929120.5708477-CDS-H-canaliculatus_F_contig1379:10899..11069Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1379 10900..11069 -
1696845685.9841144-CDS-H-canaliculatus_F_contig1379:10899..110691696845685.9841144-CDS-H-canaliculatus_F_contig1379:10899..11069Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1379 10900..11069 -
1622929120.5877116-CDS-H-canaliculatus_F_contig1379:12679..128451622929120.5877116-CDS-H-canaliculatus_F_contig1379:12679..12845Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1379 12680..12845 -
1696845685.9924073-CDS-H-canaliculatus_F_contig1379:12679..128451696845685.9924073-CDS-H-canaliculatus_F_contig1379:12679..12845Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1379 12680..12845 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929120.60331-UTR-H-canaliculatus_F_contig1379:12845..130041622929120.60331-UTR-H-canaliculatus_F_contig1379:12845..13004Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1379 12846..13004 -
1696845686.0045488-UTR-H-canaliculatus_F_contig1379:12845..130041696845686.0045488-UTR-H-canaliculatus_F_contig1379:12845..13004Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig1379 12846..13004 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1379.3018.1

>prot_H-canaliculatus_F_contig1379.3018.1 ID=prot_H-canaliculatus_F_contig1379.3018.1|Name=mRNA_H-canaliculatus_F_contig1379.3018.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=222bp
MARSVGEMKDIINNELTSIYDRTEGEDDIREVLELENAMETECRRRETDA
RTLIRDAIERLDQQKQAIVEPSERAFVAKVRGIEQHRTQAASHIQEQAEE
AAARERDIERMQVAVEETQEEIENTVDAHIMEMPRVQNSIGLYANVTRIK
WNYETEGDITAGWLLPPGEGTGGKQTGGDGGAGPLAVIEGFQFDAAGKDD
FEVANKLWDIIDGKARAMVEA*
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mRNA from alignment at H-canaliculatus_F_contig1379:9519..13004-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1379.3018.1 ID=mRNA_H-canaliculatus_F_contig1379.3018.1|Name=mRNA_H-canaliculatus_F_contig1379.3018.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3486bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1379:9519..13004- (Hapterophycus canaliculatus Oshoro5f female)
CTCGCGTCGCCACGCCACGCATCCTGAGGTAAGATTACTCCAAGGAGGAG
GAGGAGGAGGAGGATAAGGTAACGCAGAGACAGTAAACTCTAGCTTGAGG
CATCGGCTGGCGCTATCCTCTCGGGAAAAGCTGCACACCAAGGTGGAGAG
GGGCAGAGGATGGCACGTTCGGTGGGAGAGATGAAGGACATCATCAACAA
CGAATTGACGTCGATATACGATAGGACGGAGGGCGAGGACGACATCCGCG
AGGTTCTCGAGCTGGAGAACGCCATGGAGACGGAGTGCCGGCGTCGCGAG
ACGGACGCACGGACCCTGATTCGAGGTGAAACGCCTGCTAGATGCACAGG
CCTGACTGCTGTTGTCTCCTTGGTGCTCTTTTATCTTTTTGAAGATTCGC
GCCTTGAGGGTCAATCTGGTGTCGGCAAGAGAGAGCGCGCGTGTGATTGA
TGCACTGCTCGCCACCTTGTGTGCCACCGAATTAATGTTCGTGGTGGGCA
GCAGTATCTGCGCAACGCAAATTCTCTGTGCCCGTAAAGTGCCCAATTCT
TTGCTGGTCCACATGTGTATGACGCATGATACCACCCCGTGAGACGCAGG
AGATTGCGAGATTGTGGGTTCGACTAAAATGTGTATGACTAAATTATGAC
GGTCGAATCCAACGTCTAGCCAGAAATTGAGGACGGCGGAAGCTTACGGT
TAGGTGTCCCAACTCACTGATTAAAACGTCGTTTCATCTCAGTGTAGAAA
TAAAAGCACTAGCAGCGATGCGGGGGAAGGTTGGGGGACGGTTTCGACCG
CGTGCGATATGTTCTGATCCTGCCATGTACTTGCCGTCGCTCAAACCTTG
TCCCGTTTTACAAGTCCAATATATCTCATGGGGCAGGAAAGGGTGGCCTT
GTCCACCTCCTCACTCTTGAGGTGGCCATGTGAATAATAGCTGCAACTAT
GAAAATTAACCCGACTGGGGCATTGTGGCGTCTCGCACGGTAGTCAACGT
GGTTGGGGCGTGTACACCTTCGCGACGTTTCCGCACCTGCTGTGCAGGGA
CGGCGTACGAGACGATAGCCCGTGCACAGGGTCTCGCCCGAGTGCTGGGG
AAGCTACGGTGCGTCAGCAGCATCTCGAATAGTCGTGCGCTCGCTCGCGC
TGCGGCATGTCGGACATTCCGGAAACATCTTTTCACTTCCGCGCGGCAGC
AGCTCTCTCAGGATGTAGAACACCTCAAAACGGCCCCATCAAAATCGCCT
GCATCGCTGCGTTTGTGAGGGCTTGCTTCGCCGTGCGCGCGGGCGTTGTC
TCTTAGTTGGAGGTAACCTTGCTGCAACGGCTGAACTCGACAACTTGGGC
TTTTTTTGCTCTGACGGGAAGTGAGTGGGAAGCTCGGAGGGGGGGGGGAG
AAGGCAGTGTCACAAAGCAAAGCAACAGCTGTGGTGTGTTTTTGCTTTGA
GCACCGACCTACCCTACCCCGCTATGCCCGGTAGCGCGGCACCGGCCTCT
CGAATCCTCGTGGTATACATTTCGGCAGCTGGCAATCTCATTGTCTGGCG
CGCAGTACTTGCCGGGGCCATCTCGGCTGGGGAGGACAGACGGCAAACTT
TTCCTGAAATCCAACAGCAGTGCAAGTATCGTAGTTGAAGATGTAGATAC
GCAACGCTAAGCCGGCTGGCGGAAGGTGAAGAGCTCACCGAGAGGAACCA
CTTCTTGTTATCCCGGCTCCGTATTACCGGCTGAGACCGCCTAAGGCATG
CCCTCCAGAGGCTTTCTCTGGGACGCAGCACGGACAGGATGGAGGGAAAA
GGAACGAAACGCTGTCGGGGACCTTGTCGTAAAGTGTACAAACCTGAAGT
ATTGATCAACAGCAGTTCCTAATCGGACATCTTACCCACACCTTTACGCC
CGCGGCTGCGTGCATGTGCTTGGCTCTCCGTTCAGACGCTATCGAGCGGC
TGGACCAGCAGAAGCAGGCGATCGTCGAGCCATCGGAGCGTGCGTTCGTG
GCCAAGGTGAGAGGGATCGAACAGCACCGGACGCAGGCGGCGTCTCACAT
CCAGGAGCAGGCGGAGGAGGCGGCGGCGCGAGAAAGAGACATCGAGCGGA
TGCAGGTGCGACGGCAGGAGTCGCGCGGACGCAGCTGGAGTTGCCTTCGG
AACGCCACACAGCAAATTCGCCGCCTTCTTGGCTTGAGTGCTCCTTCGAC
CGTTCTTGTTACTTTTGTACTTTCCTGGCCCGGGAGTGATCCACTCGGTG
CACCCGTGGTTATCTGGTGGCAAGCAATACGGTTCATGCCACGCGACGCG
AGTCTATTTTTCCTGCCGGGCTCTAAACCGCTGACGAGCCCTTGCGGGTT
AGGGGGAACCCAGATGCAGGAAGCGGGACATGGACGAGGGTGCTTGTGCA
GGCGCAGTCGGTCGTTTGTTGTGCGCAGCGACACTGACGGGAGGTAGCGG
GGGAGCAGGGGTGTGCGCGCGTATCGATGCCTATGGACGGTCAGTGCATT
GTAGGCACCAAATCTTCGTCCGCGAAAGACTCGCGACGCGTAAAGGGAAA
CCAACGGTCGGCCTGCGGCTACGATGAGATCGACCCGCCCCGCCCAACCG
ACGAAAACAACGAAAACGTTATCCTTGGTCAGTTTTCCCGACGCGACGCT
TTCGCGCGGTCAGGGTGCCTGAGCAAACGCCATAGCTTTGGGTACCGTTT
AGGGAACCAGAGACGTGAATGAGGGTGTTTGTTTAGCCTTGGAGTGCGGC
GCTCGAACTTGAGTGAGTGCGGGCTGGCATTGGTTCGGATGAGCGGACTC
CCTCAACGGCCCTAGATACCTGGCTGGCGACGTCAATGACCCCCCTCCTG
TCTTCCCACCGCGGCCGCCCACGCCCACACCCGAACGGCCAAGCTTACGC
CGTTTTTTTTCTCCGCACGGAAATGAAAGGACTCGTAGTTCGGCCATATT
TTCTTTTTTTCCTCTCTGCGCGCCGAAAAAGCGCCTTTGGTTGAGTAAAC
CATCAACCGGCCTCAAGGGTAGTATGAACGTCAATATGAAGTGCGAATTT
TCGATCGAAGCTCACGCCACGGAAACTGTTTTCTTGATGCCACCCCCCCA
TCTCTCCCTTCCTCAATCCAATCATTACACGCGCATGCGAATGAAACTGA
GAAAAGGTTGCCGTTGAGGAAACCCAGGAGGAGATCGAGAACACCGTGGA
CGCCCACATCATGGAGATGCCGCGCGTGCAAAACTCGATCGGGCTGTACG
CCAACGTCACCCGCATCAAGTGGAACTACGAGACCGAGGGAGACATTACG
GCAGGCTGGCTGCTTCCGCCCGGGGAAGGAACGGGGGGGAAACAGACAGG
AGGAGACGGGGGGGCAGGGCCGCTTGCGGTAATCGAGGGTTTCCAGTTTG
ATGCAGCGGGAAAGGACGATTTCGAGGTTGCCAACAAGCTCTGGGACATC
ATCGACGGCAAGGCGCGTGCGATGGTGGAGGCATAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1379:9519..13004-

>mRNA_H-canaliculatus_F_contig1379.3018.1 ID=mRNA_H-canaliculatus_F_contig1379.3018.1|Name=mRNA_H-canaliculatus_F_contig1379.3018.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1332bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1379:9519..13004- (Hapterophycus canaliculatus Oshoro5f female)
ATGGCACGTTCGGTGGGAGAGATGAAGGACATCATCAACAACGAATTGAC
GTCGATATACGATAGGACGGAGGGCGAGGACGACATCCGCGAGGTTCTCG
AGCTGGAGAACGCCATGGAGACGGAGTGCCGGCGTCGCGAGACGGACGCA
CGGACCCTGATTCGAGATGGCACGTTCGGTGGGAGAGATGAAGGACATCA
TCAACAACGAATTGACGTCGATATACGATAGGACGGAGGGCGAGGACGAC
ATCCGCGAGGTTCTCGAGCTGGAGAACGCCATGGAGACGGAGTGCCGGCG
TCGCGAGACGGACGCACGGACCCTGATTCGAGACGCTATCGAGCGGCTGG
ACCAGCAGAAGCAGGCGATCGTCGAGCCATCGGAGCGTGCGTTCGTGGCC
AAGGTGAGAGGGATCGAACAGCACCGGACGCAGGCGGCGTCTCACATCCA
GGAGCAGGCGGAGGAGGCGGCGGCGCGAGAAAGAGACATCGAGCGGATGC
AGACGCTATCGAGCGGCTGGACCAGCAGAAGCAGGCGATCGTCGAGCCAT
CGGAGCGTGCGTTCGTGGCCAAGGTGAGAGGGATCGAACAGCACCGGACG
CAGGCGGCGTCTCACATCCAGGAGCAGGCGGAGGAGGCGGCGGCGCGAGA
AAGAGACATCGAGCGGATGCAGGTTGCCGTTGAGGAAACCCAGGAGGAGA
TCGAGAACACCGTGGACGCCCACATCATGGAGATGCCGCGCGTGCAAAAC
TCGATCGGGCTGTACGCCAACGTCACCCGCATCAAGTGGAACTACGAGAC
CGAGGGAGACATTACGGCAGGCTGGCTGCTTCCGCCCGGGGAAGGAACGG
GGGGGAAACAGACAGGAGGAGACGGGGGGGCAGGGCCGCTTGCGGTAATC
GAGGGTTTCCAGTTTGATGCAGCGGGAAAGGACGATTTCGAGGTTGCCAA
CAAGCTCTGGGACATCATCGACGGCAAGGCGCGTGCGATGGTGGAGGCAT
AGGTTGCCGTTGAGGAAACCCAGGAGGAGATCGAGAACACCGTGGACGCC
CACATCATGGAGATGCCGCGCGTGCAAAACTCGATCGGGCTGTACGCCAA
CGTCACCCGCATCAAGTGGAACTACGAGACCGAGGGAGACATTACGGCAG
GCTGGCTGCTTCCGCCCGGGGAAGGAACGGGGGGGAAACAGACAGGAGGA
GACGGGGGGGCAGGGCCGCTTGCGGTAATCGAGGGTTTCCAGTTTGATGC
AGCGGGAAAGGACGATTTCGAGGTTGCCAACAAGCTCTGGGACATCATCG
ACGGCAAGGCGCGTGCGATGGTGGAGGCATAG
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