mRNA_H-canaliculatus_F_contig1377.3006.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1377.3006.1 vs. uniprot
Match: D7G8T9_ECTSI (DUF4211 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8T9_ECTSI) HSP 1 Score: 302 bits (773), Expect = 5.450e-86 Identity = 217/325 (66.77%), Postives = 240/325 (73.85%), Query Frame = 1
Query: 1741 GVVEAAPAVATPRRSGRTRRKSSMINYREMLDGGGVSASDESEKGANGGAGEEEGDSSGWEGDDGQGGEQSDEELKGKAKLEGCGRDEDADEDDGFAETLQEDEXXXXXXXXXXXXXXXEVRRKGKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----VFFSHAAFFHEMEQSQDGGVHSLSVGTMTFKEAFLFYIEYIAKATEGGGAGKAFMKKYVAQPRLPEHARYGKAKETVEKKLRISGESLCGTWRQEFRDTIMRYPHYGYQHVSGDECGLTDRCSACNRSNRTKVVAFLSGADYDPNRV 2700
G+ E APA AT R + RTRR+SSM+NYREML G G S+ SGW+ DD ++SD EL GK + C RDED DEDD FA TL++DE XXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXX XXXXXXXXX FFSHAAFF+EMEQS+DGG+ SLSVGTMTFKEAFLFY+EYIAKAT+G GAG+AFMKKYVAQPR+PEHARYGKAKE VEKKLRISGESLCG+WRQ+FRDTIMRYPHYGY HV GD C LTDRCSACNRSNRT V+AFLSG++YDPNRV
Sbjct: 489 GIKEEAPAAATGRAT-RTRRRSSMVNYREMLHGKGTSSXXXXXXXXXXXXXXXX---SGWDNDDE---DESDGELDGKKSGDKCARDEDIDEDDSFAVTLKDDEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNHRYNEPDDGDEDNFIDXXXXXXXXXXXXXDAFFSHAAFFNEMEQSEDGGISSLSVGTMTFKEAFLFYVEYIAKATQGDGAGEAFMKKYVAQPRIPEHARYGKAKEMVEKKLRISGESLCGSWRQDFRDTIMRYPHYGYHHVDGDLCRLTDRCSACNRSNRTSVIAFLSGSEYDPNRV 806
BLAST of mRNA_H-canaliculatus_F_contig1377.3006.1 vs. uniprot
Match: A0A6H5KKK5_9PHAE (DUF4211 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK5_9PHAE) HSP 1 Score: 272 bits (696), Expect = 4.140e-74 Identity = 126/146 (86.30%), Postives = 137/146 (93.84%), Query Frame = 1
Query: 2263 FFSHAAFFHEMEQSQDGGVHSLSVGTMTFKEAFLFYIEYIAKATEGGGAGKAFMKKYVAQPRLPEHARYGKAKETVEKKLRISGESLCGTWRQEFRDTIMRYPHYGYQHVSGDECGLTDRCSACNRSNRTKVVAFLSGADYDPNRV 2700
FFSHAAFF+EMEQS+DGGV SLSVGTMTFKEAFLFY+EYIAKAT+G GAG+AFMKKYVAQPR+PEHARYGKAKE VEKKLRISGESLCG+WRQ+FRDTIMRYPHYGY HV GD C L DRCSACNRSNRT V+AFLSG++YDPNRV
Sbjct: 633 FFSHAAFFNEMEQSEDGGVSSLSVGTMTFKEAFLFYVEYIAKATQGDGAGEAFMKKYVAQPRIPEHARYGKAKEMVEKKLRISGESLCGSWRQDFRDTIMRYPHYGYHHVDGDLCRLNDRCSACNRSNRTSVIAFLSGSEYDPNRV 778
BLAST of mRNA_H-canaliculatus_F_contig1377.3006.1 vs. uniprot
Match: D7FLB0_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLB0_ECTSI) HSP 1 Score: 60.5 bits (145), Expect = 1.700e-5 Identity = 40/127 (31.50%), Postives = 63/127 (49.61%), Query Frame = 1
Query: 2368 YIEYIAKATEGGGAGKAFMKKYVAQPRLPEHA--RYGKAKETVEKKLRISGESLC--GTWRQEFRDTIMRYP----HYGYQH--------------VSGDECGLTDRCSACNRSNRTKV-VAFLSGA 2679
Y+E++AKA +GGG G AFM+K+ ++ HA Y KA + E ++ ES+ G+W QEF + YP H+G H + + G D C+AC+R R + +L+G+
Sbjct: 940 YLEFLAKAVQGGGKGAAFMEKFDSK----RHAFTDYRKAIKNFEGRVCTIRESIAAGGSWNQEFMTAVTSYPFVGFHFGVSHEGPTEIDDEEEGQDIDWESLGRPDPCAACHRRQRENMSTMYLAGS 1062 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1377.3006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1377.3006.1 >prot_H-canaliculatus_F_contig1377.3006.1 ID=prot_H-canaliculatus_F_contig1377.3006.1|Name=mRNA_H-canaliculatus_F_contig1377.3006.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=885bp MSAARRRRVMLESDDEDDQGGDEDLTTPRVTPPSGEQARPSKSRPKTIAAback to top mRNA from alignment at H-canaliculatus_F_contig1377:18284..27318+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1377.3006.1 ID=mRNA_H-canaliculatus_F_contig1377.3006.1|Name=mRNA_H-canaliculatus_F_contig1377.3006.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=9035bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1377:18284..27318+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1377:18284..27318+ >mRNA_H-canaliculatus_F_contig1377.3006.1 ID=mRNA_H-canaliculatus_F_contig1377.3006.1|Name=mRNA_H-canaliculatus_F_contig1377.3006.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=5310bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1377:18284..27318+ (Hapterophycus canaliculatus Oshoro5f female)back to top |