mRNA_H-canaliculatus_F_contig13760.3002.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13760.3002.1
Unique NamemRNA_H-canaliculatus_F_contig13760.3002.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13760.3002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13760contigH-canaliculatus_F_contig13760:1949..2296 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size337
Cds size294
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13760.3002.1prot_H-canaliculatus_F_contig13760.3002.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13760 1949..2254 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929116.1227343-CDS-H-canaliculatus_F_contig13760:1948..21421622929116.1227343-CDS-H-canaliculatus_F_contig13760:1948..2142Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13760 1949..2142 +
1696845685.0786831-CDS-H-canaliculatus_F_contig13760:1948..21421696845685.0786831-CDS-H-canaliculatus_F_contig13760:1948..2142Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13760 1949..2142 +
1622929116.1380026-CDS-H-canaliculatus_F_contig13760:2154..22541622929116.1380026-CDS-H-canaliculatus_F_contig13760:2154..2254Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13760 2155..2254 +
1696845685.0870454-CDS-H-canaliculatus_F_contig13760:2154..22541696845685.0870454-CDS-H-canaliculatus_F_contig13760:2154..2254Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13760 2155..2254 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929116.156904-UTR-H-canaliculatus_F_contig13760:2254..22961622929116.156904-UTR-H-canaliculatus_F_contig13760:2254..2296Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13760 2255..2296 +
1696845685.0959604-UTR-H-canaliculatus_F_contig13760:2254..22961696845685.0959604-UTR-H-canaliculatus_F_contig13760:2254..2296Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13760 2255..2296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13760.3002.1

>prot_H-canaliculatus_F_contig13760.3002.1 ID=prot_H-canaliculatus_F_contig13760.3002.1|Name=mRNA_H-canaliculatus_F_contig13760.3002.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=98bp
GTSILPQSRQRSHIFYSCKSGTKPSKRRKLRNSYRAVLSNPSNLLCIRDC
QNTHKSCQNLHQNLHPPPPYYASTCTRRPGILHEIRIHGGEQTTENI*
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mRNA from alignment at H-canaliculatus_F_contig13760:1949..2296+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13760.3002.1 ID=mRNA_H-canaliculatus_F_contig13760.3002.1|Name=mRNA_H-canaliculatus_F_contig13760.3002.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=348bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13760:1949..2296+ (Hapterophycus canaliculatus Oshoro5f female)
GGAACTTCAATCCTCCCGCAATCAAGACAGCGCTCCCACATATTTTATAG
TTGCAAGAGCGGAACAAAACCCTCGAAGCGGAGAAAACTCAGGAATAGCT
ACCGTGCAGTTCTTTCAAACCCTTCGAACCTTCTGTGTATAAGAGATTGT
CAGAATACGCACAAATCTTGTCAGAATTTGCACCAGAATTTGCACCAGAA
TTTGCCCCCCCCCCCCCCTTATTATGCAAGCACGTGCACTAGAAGGCCGG
GAATTCTTCACGAAATACGTATCCACGGGGGAGAACAAACAACTGAAAAT
ATTTGAAGATAGAGTTAGAGACCCGCCTATACTACGGACTCTGCAACC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13760:1949..2296+

>mRNA_H-canaliculatus_F_contig13760.3002.1 ID=mRNA_H-canaliculatus_F_contig13760.3002.1|Name=mRNA_H-canaliculatus_F_contig13760.3002.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=588bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13760:1949..2296+ (Hapterophycus canaliculatus Oshoro5f female)
GGAACTTCAATCCTCCCGCAATCAAGACAGCGCTCCCACATATTTTATAG
TTGCAAGAGCGGAACAAAACCCTCGAAGCGGAGAAAACTCAGGAATAGCT
ACCGTGCAGTTCTTTCAAACCCTTCGAACCTTCTGTGTATAAGAGATTGT
CAGAATACGCACAAATCTTGTCAGAATTTGCACCAGAATTTGCAGGAACT
TCAATCCTCCCGCAATCAAGACAGCGCTCCCACATATTTTATAGTTGCAA
GAGCGGAACAAAACCCTCGAAGCGGAGAAAACTCAGGAATAGCTACCGTG
CAGTTCTTTCAAACCCTTCGAACCTTCTGTGTATAAGAGATTGTCAGAAT
ACGCACAAATCTTGTCAGAATTTGCACCAGAATTTGCACCCCCCCCCCCC
TTATTATGCAAGCACGTGCACTAGAAGGCCGGGAATTCTTCACGAAATAC
GTATCCACGGGGGAGAACAAACAACTGAAAATATTTGACCCCCCCCCCCC
TTATTATGCAAGCACGTGCACTAGAAGGCCGGGAATTCTTCACGAAATAC
GTATCCACGGGGGAGAACAAACAACTGAAAATATTTGA
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