mRNA_H-canaliculatus_F_contig1376.3000.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1376.3000.1 vs. uniprot
Match: D8LFG8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFG8_ECTSI) HSP 1 Score: 403 bits (1035), Expect = 3.290e-123 Identity = 362/804 (45.02%), Postives = 441/804 (54.85%), Query Frame = 1
Query: 355 RVRPPSPEIPEGRITIAQWCEKNIGRRLPKLGDISAGVKTAAGNAEKIRVNSGSAPTAQELRGMAGDAVEGKLGELFAPGRRGSSRATMSPGVLASAXXXXXXXXXXXXXXXXXXXXSTLSSPSQDPILRQEIDALK---AEMLKLQPXXXXAESSTPAISDVPSETAAVETPRSSRPPP----SFFKVDVPKSPPGWSFKLGTPSTTTSGAVDGSKIAFSADSQAQSGFAMSGRSTAEGAEALPPPRSSRPKRRERPRRVDTVSSSSRASTVVDLKAELRAESERAAAKSPPFSPSQRRRQEEAGSPATT-EATLAAKYVDPAPLYEPPSETARTTLESPSSAKGLVGGVFGATAGGGGESGVNSESAXXXXXSTALEGVTAAARMSLEKLEFGSLSEKVKGLADQGGSASEAGVASILEQGRATVDRLQAEAARISTDALDTAGAAGXXXXXXXXXAGRLSEALGRGAEGVLLPAVGGVGTAVRNGISALSRSGA---DGIPALEGEVAALASQVVGTSTRAVSQAAGGALPSIGRALASGTLSVAQQ---VLFILRRLSAGSVFSDGRGSRDAGVEGAAAAAATVAVGVVVARGAA----------------TFGRGVNDGSG-GGGDAGLNEEGGAGRGSXXXXXXXXXXXGERRRLQPIGGSVXXXXXXXXXXXXXXXXXX---------------VKLETGAAPSEDVRYGREAVSASSTLWDMIRDSGTGAGDSVREVSEEDLLERAAQVGEKLRETAEGLKVLRHEVLALRESIRESDLEGRAKAIRERLASTLEG 2628
+ RPP P IPEGRITI QWCEKNIGRR+PKL D+ V+TAA +EKIR+NSG+APTAQ+LRGMA +AV KLG L A G +T PG +A XXXXXXXXX + SSPS +R+EIDALK AEML LQ TP PS T A P S RP S F+V+VP + P W FK+ P+ T G + +Q G G T EA PRS K LKAELRAESE+AA SP QR +Q+ PA + + A KYV PAPLYEP +E T+ SP AKG+ GV G AGG +SG LEGVTAAAR SLEKL+ +S++VK ++ GSASEAGVA++LEQGRA+++ LQAEA RIS RLSEA GRG +GVL AVG G AV G+SA+S A DG+PAL+G+ + L+++++ TS RA+S+A G A I + ++ G +A + +L +R +SA SD +D G+ VG V A GAA GR GSG GGG A EG A G+ GE RRLQPIGG VKLETGA ++ RYG EA+SASSTLWDMIR SGTGAGD+VREVSEEDLLERAA++G++LRETAEGL+VL+HEV +LRESIRESDLEGRA+A+ ERLASTLEG
Sbjct: 14 KARPPPPPIPEGRITILQWCEKNIGRRVPKLPDVETAVRTAAETSEKIRINSGAAPTAQDLRGMAKEAVTRKLGGLSAASSSGRKSSTAVPGAVAXXXXXXXXXXXAETPPGTP----SSSSPSATSDVRREIDALKEAQAEMLSLQ--------QTP-----PSATRAAAEPSSVRPTSKTTSSPFRVEVPAAAPSWGFKVSLPAMPTFGTTGRDNVVALTGPASQKG---QGPITDGQPEAADEPRSRAKKXXXXXXXXXXXXXXXXXXXXXXLKAELRAESEKAALLP---SPPQRAKQQRQQPPAISGDVAAAPKYVAPAPLYEP-AEEGVTSSTSP--AKGVAEGVPGVGAGGEEKSGGG------------LEGVTAAARASLEKLDLRDVSQQVKPFTEKVGSASEAGVAAVLEQGRASLENLQAEADRISAQVASPVA-------DKLSAGSRLSEAFGRGRDGVL-KAVGEAGRAVDQGVSAVSSRSAVVVDGLPALKGQTSGLSARLLETSGRALSRATGTA-GEISKKMSGGLADLAGRGPDILARVRSISARLFSSD---DQDGGL-----------VGGVTAEGAAXXXXXXXXXXXXXXXTAIGR---SGSGDGGGVAETGAEGIAASGNAGRRGDAVVEQGEERRLQPIGGGEGGNGVAPGEGWRDGEEAEEXXXXXXGEVLQPVGVKLETGAT-NDGERYGEEAMSASSTLWDMIRGSGTGAGDAVREVSEEDLLERAAELGKELRETAEGLEVLKHEVSSLRESIRESDLEGRARAVGERLASTLEG 752
BLAST of mRNA_H-canaliculatus_F_contig1376.3000.1 vs. uniprot
Match: A0A6H5KCP9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCP9_9PHAE) HSP 1 Score: 350 bits (897), Expect = 1.510e-101 Identity = 347/801 (43.32%), Postives = 415/801 (51.81%), Query Frame = 1
Query: 349 PGRVRPPSPEIPEGRITIAQWCEKNIGRRLPKLGDISAGVKTAAGNAEKIRVNSGSAPTAQELRGMAGDAVEGKLGELFAPGRRGSSRATMSPGVLASAXXXXXXXXXXXXXXXXXXXXS-------TLSSPSQDPILRQEIDALK---AEMLKLQPXXXXAESSTPAISDVPSETAAVETPRSSRPPPSFFKVDVPKSPPGWSFKLGTPSTTTSGAVDGSKIAFSADSQAQSGFAMSGRSTAEGAEALPPPRSSRPKRRERPRRVDTVSSSSRASTV-VDLKAELRAESERAAAKSPPFSPSQRRRQEEAGSP---ATTEATLAAKYVDPAPLYEPPSETARTTLESPSSAKGLVGGVFGATAGGGGESGVNSESAXXXXXSTALEGVTAAARMSLEKLEFGSLSEKVKGLADQGGSASEAGVASILEQGRATVDRLQAEAARISTDALDTAGAAGXXXXXXXXXAGRLSEALGRGAEGVLLPAVGGVGTAVRNGISALSRSGA---DGIPALEGEVAALAS---QVVGTSTRAVSQAAGGALPSIGRALASGTLSVAQQVLFILRRLSAGSVFSDGRGSRDAGVEGAAAAAATVAVGVVVARGAA-TFGRGVNDGSGGG----GDAGLNEEGGAGRGSXXXXXXXXXXXGERRRLQPIGGS----------------VXXXXXXXXXXXXXXXXXXVKLETGAAPSEDVRYGREAVSASSTLWDMIRDSGTGAGDSVREVSEEDLLERAAQVGEKLRETAEGLKVLRHEVLALRESIRESDLEGRAKAIRERLASTLEG 2628
P +V IPEGRITI QWC+KNIGRR+PKL D+ GV+TAA AEKIR+NSG+APTAQ+LRGMA +AV KLG L A XXXXXXXXXX + + SSPS +RQEIDALK AEML LQ A S+ S + + A +P F+V P + P W FK+ P+T T G G D Q EA PRS + K+R + RR D S + AST VDLKAELRAESE+AA P + + A KYV PAPLYEP E +T S AKGL GV G AGG +S LEGVT AAR SLEKL+ +S++V+ ++ GSASEAGVA++LEQ RA+ LQAE RIS GRLSEA GRG + V+L AVG G AV G+SA+S A DG+PAL+G+ + L++ Q++ T RA+S AG I ++ G +A + IL R+ + S R GV A T GR + G GGG G G+ G AGR GE RRLQPIGG+ XXXXXXXXX VKLETGA +E RYG +A+SASSTLWDMIR SGTGAGD+VREVSEEDLLERAAQ+G KLRETAEGL+VL+HEV LRESIRESDLEG ASTLEG
Sbjct: 191 PRKVXXXXXPIPEGRITILQWCQKNIGRRVPKLADVETGVRTAAETAEKIRINSGAAPTAQDLRGMAKEAVTRKLGGLSAASXXXXXXXXXXXXXXXXXXXXXXXXXXXGVQQQARWSAAETPPGTPSSSSPSATSDVRQEIDALKEAQAEMLSLQQTPPSATSTAAEPSSLRPTSKATSSP---------FRVKAPAAAPSWGFKVSLPATPTFGTAAGQ------DGQP---------------EAADEPRS-KAKKRTKSRRADAAVSGASASTAAVDLKAELRAESEKAALLPSPXXXXXXXXXXXXXXXXXVVSGDVAGAPKYVAPAPLYEPAEERITSTT---SPAKGLAAGVPGIGAGGEEKS------------DAGLEGVTVAARASLEKLDLRDVSQQVEPFTEKVGSASEAGVAAVLEQARASXXNLQAEVDRISAQVAPPVA-------DKLSAGGRLSEAFGRGRD-VVLKAVGETGRAVDQGVSAVSSRSAVVVDGLPALKGQASGLSARCPQLLETWGRALSGTAG----EIYDKISGGLADLAGREPDILARVGSISAQLFSSDDRFGGVSAEAXXXXXXXXXXXXXXXXXXTIGRSRSSGDGGGVAETGAEGIGASGNAGR-----RGGATVEQGEERRLQPIGGAGXXXXXXXXXXXXXXXXXXXXXXXXXEGEVLQPVGVKLETGAT-NEGERYGEDAMSASSTLWDMIRGSGTGAGDAVREVSEEDLLERAAQLGRKLRETAEGLEVLKHEVSLLRESIRESDLEGXXXXXXXXXASTLEG 927 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1376.3000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1376.3000.1 >prot_H-canaliculatus_F_contig1376.3000.1 ID=prot_H-canaliculatus_F_contig1376.3000.1|Name=mRNA_H-canaliculatus_F_contig1376.3000.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=776bp MFGLVEPRPPFPGRVRPPSPEIPEGRITIAQWCEKNIGRRLPKLGDISAGback to top mRNA from alignment at H-canaliculatus_F_contig1376:1432..10389+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1376.3000.1 ID=mRNA_H-canaliculatus_F_contig1376.3000.1|Name=mRNA_H-canaliculatus_F_contig1376.3000.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=8958bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1376:1432..10389+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1376:1432..10389+ >mRNA_H-canaliculatus_F_contig1376.3000.1 ID=mRNA_H-canaliculatus_F_contig1376.3000.1|Name=mRNA_H-canaliculatus_F_contig1376.3000.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=4656bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1376:1432..10389+ (Hapterophycus canaliculatus Oshoro5f female)back to top |