mRNA_H-canaliculatus_F_contig13745.2991.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13745.2991.1
Unique NamemRNA_H-canaliculatus_F_contig13745.2991.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13745.2991.1 vs. uniprot
Match: A0A6H5JZJ1_9PHAE (Bromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ1_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 2.070e-45
Identity = 85/107 (79.44%), Postives = 95/107 (88.79%), Query Frame = 1 
Query:    1 RFTLDGQPVRKFALIADSGRGATQLCQSLERQAGLSVRGMEDLPDAVFLRGCDPRTSQALDTAIPNLSRPEVQAYVVRLLFQDSFRQFVGDLSEMFSHVQTHLPVPT 321
            RFTL G PVRKFALIA+ GR A +LCQ+L+R+ G+SVRGMEDLPDAVFLRG D RT+QAL+  IPNLSRPEVQAY+VRLLFQDSF +FV DLSEMFSHVQTHLPVPT
Sbjct:  108 RFTLPGHPVRKFALIAECGRSAAELCQALDRK-GVSVRGMEDLPDAVFLRGGDRRTAQALEAGIPNLSRPEVQAYIVRLLFQDSFHEFVSDLSEMFSHVQTHLPVPT 213
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13745.2991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JZJ1_9PHAE2.070e-4579.44Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13745contigH-canaliculatus_F_contig13745:422..2968 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size825
Cds size825
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13745.2991.1prot_H-canaliculatus_F_contig13745.2991.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13745 422..2968 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929114.7503476-CDS-H-canaliculatus_F_contig13745:421..5181622929114.7503476-CDS-H-canaliculatus_F_contig13745:421..518Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13745 422..518 +
1696845684.500824-CDS-H-canaliculatus_F_contig13745:421..5181696845684.500824-CDS-H-canaliculatus_F_contig13745:421..518Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13745 422..518 +
1622929114.7704158-CDS-H-canaliculatus_F_contig13745:1408..15441622929114.7704158-CDS-H-canaliculatus_F_contig13745:1408..1544Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13745 1409..1544 +
1696845684.509279-CDS-H-canaliculatus_F_contig13745:1408..15441696845684.509279-CDS-H-canaliculatus_F_contig13745:1408..1544Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13745 1409..1544 +
1622929114.7860181-CDS-H-canaliculatus_F_contig13745:2280..25851622929114.7860181-CDS-H-canaliculatus_F_contig13745:2280..2585Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13745 2281..2585 +
1696845684.5179408-CDS-H-canaliculatus_F_contig13745:2280..25851696845684.5179408-CDS-H-canaliculatus_F_contig13745:2280..2585Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13745 2281..2585 +
1622929114.8026483-CDS-H-canaliculatus_F_contig13745:2681..29681622929114.8026483-CDS-H-canaliculatus_F_contig13745:2681..2968Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13745 2682..2968 +
1696845684.527557-CDS-H-canaliculatus_F_contig13745:2681..29681696845684.527557-CDS-H-canaliculatus_F_contig13745:2681..2968Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13745 2682..2968 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13745.2991.1

>prot_H-canaliculatus_F_contig13745.2991.1 ID=prot_H-canaliculatus_F_contig13745.2991.1|Name=mRNA_H-canaliculatus_F_contig13745.2991.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=275bp
RFTLDGQPVRKFALIADSGRGATQLCQSLERQAGLSVRGMEDLPDAVFLR
GCDPRTSQALDTAIPNLSRPEVQAYVVRLLFQDSFRQFVGDLSEMFSHVQ
THLPVPTQPPVPAPAAAAFAFAARQDGGGGSASRGRQPDKTARFGEDGSG
EGGGGTDDSDRGDGGGGDGSDTRAYDRGGDSRVVGSSGITTFDPGSGSGG
GGATGKTKGRAQKAGGRGGRGGRGRKGNGPGRKVGQGGRGGGGARGGGGG
GGGGGGGGGGGGGGGGGGGGGEGSE
back to top

mRNA from alignment at H-canaliculatus_F_contig13745:422..2968+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13745.2991.1 ID=mRNA_H-canaliculatus_F_contig13745.2991.1|Name=mRNA_H-canaliculatus_F_contig13745.2991.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2547bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13745:422..2968+ (Hapterophycus canaliculatus Oshoro5f female)
AGGTTTACTCTGGACGGGCAACCCGTGCGGAAGTTCGCCCTCATCGCCGA
CAGTGGGAGGGGCGCCACCCAGCTATGTCAGTCGCTCGAGCGTCAAGGTA
GGCACAACGACAACGGTATCATCGTAGACCAGTACCAACAATAACAACAG
CAGCAACAACAGCAACGACAAGAAGACGCAACACACAGGAAGATTACAAC
ATTGCAATGAAACCAAGTCATCAACGACAGCAACGACAGCGTTGGCCAAT
CGCGAGGCACCGACCTTTCCGTCACTTGTTCGTTCCCCTAGGAGCATGGG
ATCGTTTTCGCGGCCCATCCAGGCGGTGTTTTGCCGCCCTCGTCGCGTGT
TGTGCACTGATCTCGATGCTAGCCCGATCTGGGGCGGTGTTCCGTGAGGC
TGGTCATCCAGCATTGCCGTCAAGTGGTGGGCACAAACACGCTTCAGCAA
CAGGAGTTGAAAGCATTCTGTACCGTCCACGCATGTTGGCACGAGAATCC
ACTAACCCCCTCGCTTCGTCACTCACGATCGCCCTGGGGGGTATGTTCCT
AGAAGATACCTTCATCGACGCCTTTGGGCTGCAGGGACTGGCGTTCACTC
GGCTGGCCGTATCTGAACCTAAGCGTGGCCGCCGCCACGCAAAACCAAAA
AGCTTCTCCTTGTGCGTGGCAAGTGTTGCCACCATTTGCAGTAGCATATA
CTTGCGCACAAACCCATAGGTGTGTTGTTTTTTTCTTGCTGTGCCGGCTG
TTTTCTCGGCCCGGCTAGGTGATGGCAATCAGCACTTGCAGCTTCATCGT
CTGTCGGCAGCATGGATGAAGTGGTTTGACTGCGCGGTCGCCGTCCCTGC
CAACGGGCGACTCCACACAAAAGACGAGAGCGTGCGCATTCTGTGTTGCC
TATGCTGTGCAGGCGAAAAGCGCTCATCCAGTGATTTCGCCTCTGCCGCC
CCTTTCATCGTCGTGGGGTGCTCGAGCGCCGGGTGAGCAGGCTTGAGCGT
GCGCGGCATGGAAGACTTGCCTGACGCGGTGTTCCTGAGGGGATGCGATC
CGCGAACCTCGCAAGCCCTAGATACCGCCATCCCCAACCTATCGAGGCCG
GAAGTGCAGGCGTACGTCGTCAGGTACCTCGTAGATACACCTGAGATCCG
ACGAAAAAATGTGGATGCCACAGGAGGCGCGGGGGGAGGGTCGATGGCGA
GGTTGGTGCTGTCGGGAAGTTTCTCTTTTTTCAGTAAAACTAGTCGACCA
ACACCAAAGGAATACCCTCCCCTGAGACAAAGCGGGGGGTTACCGAGCGC
TGGCTAGGTAGGTGCGATTGGGAAGATACTAATGCCACTGTTTATTTGCC
TTCGGGAAGCAGGCGGCCGATAGTGGTCTTGAGAAACGGCTGGGAAGGGG
AAGCTTTTTAAGGTTAATCTCGTACTGCCGCTGACAGGAAAAACACCCGT
TGAGAAAGAGGAGTTTTGATGGAAACCCAACGTGCACGGAAACATTATGA
GCAGTCATGCATCTTGTGCATAATTGGTTCGTTCGCTCGCAGTTTGTGGT
TGATTTCCTTTTCGGGGGGGGGGGCGGGGGAGCGGCGCACACGACAAATG
TACTCATCCCGTGAGCAGGTGCCACCGTCAGAAACTTCCACTTTCGATGT
ATGCCGTGGGCAACCGGTAGCACTCTCGTGCCCTGCTCTTCCCAGGTCTC
TCTTGTTCCCCCTGCGTGCCGTCTCTCGCGTTCCTCACGACCAAAAATCT
CGGTGCCTGCGCGGGCCCTTGCGCTTCCGCCTGTGTCCGTTCTCCTGCCG
CACCCGTTTTCGTCTCGAACTCCCGACCAAACGACGGGAACAAATGGACT
CGAAAAAAGGCTTCTGTTTCAGGATTCCTTTCGGCAGTTCGTGGGCGACT
TGAGCGAGATGTTCTCTCACGTGCAGACCCACCTCCCAGTGCCAACCCAA
CCTCCAGTCCCGGCACCGGCGGCGGCGGCGTTCGCGTTCGCTGCTCGGCA
AGATGGAGGTGGGGGTAGCGCCTCCCGTGGGAGGCAGCCGGACAAGACGG
CCCGCTTCGGCGAAGATGGCAGCGGCGAGGGCGGTGGCGGTACTGATGAT
AGTGATAGGGGCGATGGCGGGGGGGGCGACGGCAGTGATACGAGAGCTTA
TGACCGTGGTGGTGGTGATGGTGGTCGTCGTCGTGGCGAGAAGGGTGCCG
CGGTGAGAGGGGCGGAGAGCAAGAGCGTTGCGAAAGATGGTGGTAGGGGG
AAGGGAGAAGACAGCCGTGTCGTCGGCAGCAGTGGCATCACCACGTTCGA
TCCTGGAAGTGGGAGCGGGGGAGGAGGTGCCACGGGAAAAACAAAGGGAA
GGGCACAGAAGGCCGGCGGAAGAGGAGGAAGAGGAGGACGAGGCAGGAAA
GGCAACGGACCAGGGAGGAAAGTGGGGCAGGGGGGCAGAGGAGGAGGAGG
AGCAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGGGGAGGAGGAGGAGAGGGCTCAGAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13745:422..2968+

>mRNA_H-canaliculatus_F_contig13745.2991.1 ID=mRNA_H-canaliculatus_F_contig13745.2991.1|Name=mRNA_H-canaliculatus_F_contig13745.2991.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1650bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13745:422..2968+ (Hapterophycus canaliculatus Oshoro5f female)
AGGTTTACTCTGGACGGGCAACCCGTGCGGAAGTTCGCCCTCATCGCCGA
CAGTGGGAGGGGCGCCACCCAGCTATGTCAGTCGCTCGAGCGTCAAGAGG
TTTACTCTGGACGGGCAACCCGTGCGGAAGTTCGCCCTCATCGCCGACAG
TGGGAGGGGCGCCACCCAGCTATGTCAGTCGCTCGAGCGTCAAGCAGGCT
TGAGCGTGCGCGGCATGGAAGACTTGCCTGACGCGGTGTTCCTGAGGGGA
TGCGATCCGCGAACCTCGCAAGCCCTAGATACCGCCATCCCCAACCTATC
GAGGCCGGAAGTGCAGGCGTACGTCGTCAGCAGGCTTGAGCGTGCGCGGC
ATGGAAGACTTGCCTGACGCGGTGTTCCTGAGGGGATGCGATCCGCGAAC
CTCGCAAGCCCTAGATACCGCCATCCCCAACCTATCGAGGCCGGAAGTGC
AGGCGTACGTCGTCAGGCTTCTGTTTCAGGATTCCTTTCGGCAGTTCGTG
GGCGACTTGAGCGAGATGTTCTCTCACGTGCAGACCCACCTCCCAGTGCC
AACCCAACCTCCAGTCCCGGCACCGGCGGCGGCGGCGTTCGCGTTCGCTG
CTCGGCAAGATGGAGGTGGGGGTAGCGCCTCCCGTGGGAGGCAGCCGGAC
AAGACGGCCCGCTTCGGCGAAGATGGCAGCGGCGAGGGCGGTGGCGGTAC
TGATGATAGTGATAGGGGCGATGGCGGGGGGGGCGACGGCAGTGATACGA
GAGCTTATGACCGTGGTGGTGGCTTCTGTTTCAGGATTCCTTTCGGCAGT
TCGTGGGCGACTTGAGCGAGATGTTCTCTCACGTGCAGACCCACCTCCCA
GTGCCAACCCAACCTCCAGTCCCGGCACCGGCGGCGGCGGCGTTCGCGTT
CGCTGCTCGGCAAGATGGAGGTGGGGGTAGCGCCTCCCGTGGGAGGCAGC
CGGACAAGACGGCCCGCTTCGGCGAAGATGGCAGCGGCGAGGGCGGTGGC
GGTACTGATGATAGTGATAGGGGCGATGGCGGGGGGGGCGACGGCAGTGA
TACGAGAGCTTATGACCGTGGTGGTGACAGCCGTGTCGTCGGCAGCAGTG
GCATCACCACGTTCGATCCTGGAAGTGGGAGCGGGGGAGGAGGTGCCACG
GGAAAAACAAAGGGAAGGGCACAGAAGGCCGGCGGAAGAGGAGGAAGAGG
AGGACGAGGCAGGAAAGGCAACGGACCAGGGAGGAAAGTGGGGCAGGGGG
GCAGAGGAGGAGGAGGAGCAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGAGGAGG
AGAGGGCTCAGAGACAGCCGTGTCGTCGGCAGCAGTGGCATCACCACGTT
CGATCCTGGAAGTGGGAGCGGGGGAGGAGGTGCCACGGGAAAAACAAAGG
GAAGGGCACAGAAGGCCGGCGGAAGAGGAGGAAGAGGAGGACGAGGCAGG
AAAGGCAACGGACCAGGGAGGAAAGTGGGGCAGGGGGGCAGAGGAGGAGG
AGGAGCAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGGGGAGGAGGAGGAGAGGGCTCAGAG
back to top