mRNA_H-canaliculatus_F_contig13732.2986.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13732.2986.1
Unique NamemRNA_H-canaliculatus_F_contig13732.2986.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13732.2986.1 vs. uniprot
Match: D8LLP4_ECTSI (Leucine rich repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP4_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 1.760e-33
Identity = 72/77 (93.51%), Postives = 73/77 (94.81%), Query Frame = 3 
Query: 1296 MGNKESSHSSTFSRGQGATSDIRDALAGIPGSAPKNKTGRKVTAQKMKTAGATGVLALQEHGLKEIPEGLFLLVKLR 1526
            MGNKESSHSSTFSRGQGATSD RDAL  +PGSAPKNKTGRKVTAQKMKTAGATGVLALQEHGLKEIPEGLF LVKLR
Sbjct:    1 MGNKESSHSSTFSRGQGATSDFRDALTSLPGSAPKNKTGRKVTAQKMKTAGATGVLALQEHGLKEIPEGLFTLVKLR 77
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13732.2986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLP4_ECTSI1.760e-3393.51Leucine rich repeat protein n=2 Tax=Ectocarpus Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13732contigH-canaliculatus_F_contig13732:94..2800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.1
Seed ortholog evalue1.3e-31
Seed eggNOG ortholog2880.D8LLP4
Preferred nameLRRC57
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionLeucine rich repeat protein
Ec32 orthologEc-04_004990.1
Exons2
Model size1944
Cds size291
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13732.2986.1prot_H-canaliculatus_F_contig13732.2986.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13732 452..1505 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929114.125973-UTR-H-canaliculatus_F_contig13732:93..4511622929114.125973-UTR-H-canaliculatus_F_contig13732:93..451Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13732 94..451 -
1696845684.2207413-UTR-H-canaliculatus_F_contig13732:93..4511696845684.2207413-UTR-H-canaliculatus_F_contig13732:93..451Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13732 94..451 -
1622929114.1620693-UTR-H-canaliculatus_F_contig13732:1505..28001622929114.1620693-UTR-H-canaliculatus_F_contig13732:1505..2800Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13732 1506..2800 -
1696845684.2506762-UTR-H-canaliculatus_F_contig13732:1505..28001696845684.2506762-UTR-H-canaliculatus_F_contig13732:1505..2800Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13732 1506..2800 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929114.1374085-CDS-H-canaliculatus_F_contig13732:451..6231622929114.1374085-CDS-H-canaliculatus_F_contig13732:451..623Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13732 452..623 -
1696845684.2319207-CDS-H-canaliculatus_F_contig13732:451..6231696845684.2319207-CDS-H-canaliculatus_F_contig13732:451..623Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13732 452..623 -
1622929114.148466-CDS-H-canaliculatus_F_contig13732:1386..15051622929114.148466-CDS-H-canaliculatus_F_contig13732:1386..1505Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13732 1387..1505 -
1696845684.2413216-CDS-H-canaliculatus_F_contig13732:1386..15051696845684.2413216-CDS-H-canaliculatus_F_contig13732:1386..1505Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13732 1387..1505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13732.2986.1

>prot_H-canaliculatus_F_contig13732.2986.1 ID=prot_H-canaliculatus_F_contig13732.2986.1|Name=mRNA_H-canaliculatus_F_contig13732.2986.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=97bp
MGNKESSHSSTFSRGQGATSDIRDALAGIPGSAPKNKTGRKVTAQKMKTA
GATGVLALQEHGLKEIPEGLFLLVKLRVSDEQGQANRVPQPRAAVI*
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mRNA from alignment at H-canaliculatus_F_contig13732:94..2800-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13732.2986.1 ID=mRNA_H-canaliculatus_F_contig13732.2986.1|Name=mRNA_H-canaliculatus_F_contig13732.2986.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2707bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13732:94..2800- (Hapterophycus canaliculatus Oshoro5f female)
TTTGTGGGGAGGATATCAAGCCACGAGCTCAAGGAAGACAATCGGGTGGC
CGCGTCGAGCAGCAGCAGTATAGCTCTGCATTCCCGATCCTGGATCCAGG
GGACAGCAGTCATACCAGTGTCGATGGCACGGGTGACAAGAGCAGCATTC
GCGATGGGTGGAGAATAAGGAAGGGCGCTTCGGAAAGAGGGGGCTATGAT
TGACGCGAGCTTGAGCTTTGACAACAAACTGGTTTTACTTGTGGTTATCG
TGTGGTAAGCAGCTTGAAATTGTTCGGTAATTAATTGCGGGTCGCGCTGG
TCGTTGTCGGTGCCACGGCAGACTGCAACGCCATGTGTATGTACCGCTTC
GTTGTTTCCGATGGAAGATCGAGATGGTTCATAGGTTGAGGCTAGTCTGA
CGCAAACGGGCCAATTTTGAATCCTGGAATCAATCGTGGAGCAACTTCAG
TGTTTTCGTTCATGTGGGACCACGGAAAAAGAGCTCTTGTGCGGCAACTT
CACTGTTTTCATTCTCGCGGGACGACGGAAGAAGAGCTCGGTCACAGATG
TTGACTCGGCGCTCGGCGCCCTGGGGATTATTTCTATCGGGCGAATCGCG
ACGCAAGACAAGTGATGCTTTCCACGCGCGTTGGGTATGTGATCCCGCTC
GACGGTGTCTGGTTACTCAGAATCCCCGCCGAAGTGTATTGACATGTCTG
CAACGCCGTCGGAGTTGTGGAGACTAAATGTGCGGCGACTTCGAGACTAC
GATCGAAACATGTTGTTCGTCGAGGCCAAATACGTGTCTGAACAGCGGAT
GTTAGATCAATGTTTCGACCTTCGATTGATGAGCAGCAGCGCCCGCACGT
CCAATGTGTTAGCTTGAGCGAGTACGCTCGTTGCACCGTATCGCATCGCG
TACCAGATCCACACGCAGATGAACCCGTTGGTAGTCTTTTAACCAAGGGG
GGACAGCATTTCCAGTTGGAATCGCCTTCGCCTATTGAACTCCCTTGTTA
TTCCACCGCGTTTTGCATCGAGGTTCGCTCGGAGAACAGACACGGAGTAC
AGAGTCGCATAAGGCAATTGGCAGACACCTGAACAAAAGCTCGACGGAGA
AACACGGGCGTAACCAGGACGGCGCCACCTCACGCCTTGCAGACGGTGCG
CAAGCATAGGGCTGGGTGAAGTTTCTGCGATCTGTGGAGATCGAGACAGA
GGCGAACGGAGATAAAATTATAAAATTAGGGGGAACAGGAGCAGACTTGA
AGTTAGGAGCACCTGCTTCGCCGCCTTGCTGACGGAGACAACGGCATGGG
GAACAAGGAATCATCGCATTCGTCCACCTTCTCGAGAGGGCAGGGCGCCA
CGTCGGACATCCGGGATGCTCTCGCGGGCATCCCCGGCAGCGCGCCCAAG
AATAAAACCGGGAGGTACAAACTGCGCAAATTCAAACTTGCGGACCGACG
AGACTGTCACTACTCTGCCTGATGTAGTGGAGATCCGCCGGGAGCGAAGC
CTTCCGCCGAAGTCCAGGTCTATTGCGGCTGCTGCTGCTGCTGCTGCTGC
TGCTTCAGCGGTCTGAGCGACTTACGGGTAGCAGCGGTCATTCTCTGGAA
GAATTTACCTGTTGTGGCACCTGAAACGGCCGATGCAGAACCGCTGGGAT
GCCCGATACGATTTGTTTGCCTTCTGCAGCATCGGGGGCTTTCTAGAGGC
AAAATGCCCTTGTATCATCAGTCCAGGGAGCGGGGAAACTGGGAAGAAGG
CCCGTGGTTGCCGGACGGGCGTCTACGTGTCTTCATTTCTCACTACCAAT
GCAATTCACGTATTTGATTCTGATTCCTCTCGAGTGTGGCGAGGTGCCTC
GGAGACGTAACACAACCTGCAAGGAGACTTCAAGTGACGCCGGCCGACAC
GCGCCTTGCATCGCCTACAAGTACAACAATCTCCAAGGACATGTCGTTTT
TGAAATGGTTCCACACGTCTGGCCTGGTTTCATGGGTGCCGTTGCCTCCC
GTCCTCAACCGTTTCCGTGACACCCGGGCGTCCACCGACGCTGCCGCAGC
TTCTCCGTGCGACACCCTACCCCACCATTCCTCTCTCGAGAGCCCCTCCC
ATCGCGCACAGCAGTTACTTCATTCCACCACACGCATCATGCCTGGGATA
CGCATCGTTCACTTGTGCGTCTGCCAGGAAGGTGACCGCCCAAAAGATGA
AGACCGCGGGAGCCACCGGCGTGCTGGCGCTGCAAGAGCACGGTCTCAAG
GAAATACCGGAGGGGTTGTTTCTGCTCGTCAAGCTTAGGGTGAGCGACGA
GCAAGGGCAAGCAAATCGTGTGCCTCAACCAAGGGCAGCAGTTATTTGAG
TCGACCCGGGGCGTCCCCCCTGCCTTAGCTGTCGCTGGTGTTCGGACAGA
GACGTCGCGACGTGCGCAACACGTTCCGTGAGACCCGTCTTAAGCGTCGA
TCGTTCGTCGGAACCTATCGCGTCTGATGGTGCGCCCGCCTTTTTTTGCG
ATGCGCGTGGATGTATTTTTTAGTTGTTCGCTCTCGTTACAGTTACTCTC
GCCAGTGAGTCCCACACGTGAAAACTTACGGCCCAGCGTTGTCCTTCCAC
AGCAGAGGAGCCGTTCTCGAGCGATCGAACCAGACCTACGGGATAGCGGG
GGTGGTGTACCTGTGCTTTGCTCCCCGCGCTGTCTGTCCTCTTCGTGTGA
CTCGACC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13732:94..2800-

>mRNA_H-canaliculatus_F_contig13732.2986.1 ID=mRNA_H-canaliculatus_F_contig13732.2986.1|Name=mRNA_H-canaliculatus_F_contig13732.2986.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=582bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13732:94..2800- (Hapterophycus canaliculatus Oshoro5f female)
ATGGGGAACAAGGAATCATCGCATTCGTCCACCTTCTCGAGAGGGCAGGG
CGCCACGTCGGACATCCGGGATGCTCTCGCGGGCATCCCCGGCAGCGCGC
CCAAGAATAAAACCGGGAGATGGGGAACAAGGAATCATCGCATTCGTCCA
CCTTCTCGAGAGGGCAGGGCGCCACGTCGGACATCCGGGATGCTCTCGCG
GGCATCCCCGGCAGCGCGCCCAAGAATAAAACCGGGAGGAAGGTGACCGC
CCAAAAGATGAAGACCGCGGGAGCCACCGGCGTGCTGGCGCTGCAAGAGC
ACGGTCTCAAGGAAATACCGGAGGGGTTGTTTCTGCTCGTCAAGCTTAGG
GTGAGCGACGAGCAAGGGCAAGCAAATCGTGTGCCTCAACCAAGGGCAGC
AGTTATTTGAGAAGGTGACCGCCCAAAAGATGAAGACCGCGGGAGCCACC
GGCGTGCTGGCGCTGCAAGAGCACGGTCTCAAGGAAATACCGGAGGGGTT
GTTTCTGCTCGTCAAGCTTAGGGTGAGCGACGAGCAAGGGCAAGCAAATC
GTGTGCCTCAACCAAGGGCAGCAGTTATTTGA
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