mRNA_H-canaliculatus_F_contig13730.2985.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13730.2985.1
Unique NamemRNA_H-canaliculatus_F_contig13730.2985.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13730.2985.1 vs. uniprot
Match: A0A6H5JC81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC81_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 6.590e-25
Identity = 56/113 (49.56%), Postives = 76/113 (67.26%), Query Frame = 1 
Query:  190 SPSVGFRGNALTLRDLPLYVGQFLSTFPGVDSLHLEVRQNGDLVLKRGDTPASSGEGPLLWAHRATGSIGGRANGGLSCVVQGFLETLGSAERE-DIPVDLIVKNGRWSVHRS 525
            +P+  FRG+++++ D PL  GQFLST P VDS +LEV + GD++L++GD PA       LWAHRATGS+GG A GGL C V+ + E   +  ++  +PV L VKNGRW V R 
Sbjct:  111 APTPAFRGDSISVDDYPLIPGQFLSTAPVVDSANLEVTEVGDVILRQGDIPAYPTNPKPLWAHRATGSVGGTAKGGLGCAVEAWWERATNGGQDMRVPVHLAVKNGRWRVGRG 223
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BLAST of mRNA_H-canaliculatus_F_contig13730.2985.1 vs. uniprot
Match: D8LQD2_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQD2_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 8.230e-25
Identity = 56/115 (48.70%), Postives = 77/115 (66.96%), Query Frame = 1 
Query:  181 PSTSPSVGFRGNALTLRDLPLYVGQFLSTFPGVDSLHLEVRQNGDLVLKRGDTPASSGEGPLLWAHRATGSIGGRANGGLSCVVQGFLETLGSAEREDIPVDLIVKNGRWSVHRS 525
            P  SP+  FRG+ ++  D PL  GQFLST   VDS ++E+ + GD++++ GD PA SG+ P LWA+RATGS G +A+GGL CV++ +   +     +DIPV L VKNGRW V R 
Sbjct:  148 PDASPA--FRGHVMSPGDYPLQTGQFLSTASLVDSTNVEITEIGDVIVRAGDIPAFSGDKPPLWAYRATGSTGDKADGGLGCVLESWWRRMVKGTDDDIPVHLYVKNGRWRVGRG 260
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BLAST of mRNA_H-canaliculatus_F_contig13730.2985.1 vs. uniprot
Match: D8LQD9_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQD9_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 1.450e-24
Identity = 58/119 (48.74%), Postives = 77/119 (64.71%), Query Frame = 1 
Query:  169 GVRRPSTSPSVGFRGNALTLRDLPLYVGQFLSTFPGVDSLHLEVRQNGDLVLKRGDTPASSGEGPLLWAHRATGSIGGRANGGLSCVVQGFLETLGSAEREDIPVDLIVKNGRWSVHRS 525
            G   P  SP+  FRG ++   D PL  GQFLST P VDS ++E+ + GD++L+ GD PA SG+   LWA+RATGS G +A+GGL CV++ +   +     +DIPV L VKNGRW V R 
Sbjct:  284 GPDTPEVSPA--FRGQSMAPGDYPLQTGQFLSTAPLVDSTNVEITEIGDVILRAGDIPAFSGDKSPLWAYRATGSTGDKADGGLGCVLESWWRRMVKGTYDDIPVHLYVKNGRWRVGRG 400
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BLAST of mRNA_H-canaliculatus_F_contig13730.2985.1 vs. uniprot
Match: A0A6H5KXU4_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXU4_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 5.170e-23
Identity = 57/119 (47.90%), Postives = 75/119 (63.03%), Query Frame = 1 
Query:  169 GVRRPSTSPSVGFRGNALTLRDLPLYVGQFLSTFPGVDSLHLEVRQNGDLVLKRGDTPASSGEGPLLWAHRATGSIGGRANGGLSCVVQGFLETLGSAEREDIPVDLIVKNGRWSVHRS 525
            G   P  SP+  FRG+ ++  D PL  GQFLST P VDS ++E+ + GD++L+ G  PA SG+ P LWA+RATGS G +A+GGL CV + +   +     ED  V L VKNGRW V R 
Sbjct:   58 GSDTPDASPA--FRGHVISPGDYPLQTGQFLSTAPLVDSTNVEITEIGDVILRAGGFPAFSGDKPPLWAYRATGSTGDKADGGLGCVFESWWRRMVKGTDED--VHLYVKNGRWRVGRG 172
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BLAST of mRNA_H-canaliculatus_F_contig13730.2985.1 vs. uniprot
Match: A0A6H5JM55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM55_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 6.210e-7
Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:  328 RGDTPASSGEGPLLWAHRATGSIGGRANGGLSCVVQGFLETLGSAERE-DIPVDLIVKNGRWSVHRS 525
            +GD PA   +   LWA+R TGS+GG ANGGL C V+G+ E   +  R+  + V L +KN RW V R 
Sbjct:  185 QGDIPAYPTDNTPLWAYRPTGSVGGTANGGLGCAVEGWWERATNGGRDMGVLVHLAMKNSRWRVGRG 251
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13730.2985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JC81_9PHAE6.590e-2549.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQD2_ECTSI8.230e-2548.70PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
D8LQD9_ECTSI1.450e-2448.74PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KXU4_9PHAE5.170e-2347.90PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A6H5JM55_9PHAE6.210e-746.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13730contigH-canaliculatus_F_contig13730:827..2999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.9
Seed ortholog evalue6.1e-22
Seed eggNOG ortholog2880.D8LKF2
Preferred nameDUG3
KEGG rclassRC00408
KEGG koko:K01836,ko:K14262,ko:K18802
KEGG ReactionR08193
KEGG Pathwayko00520,ko01100,ko01130,map00520,map01100,map01130
GOsGO:0003674,GO:0003824,GO:0004044,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006518,GO:0006575,GO:0006749,GO:0006751,GO:0006790,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008238,GO:0008242,GO:0009056,GO:0009987,GO:0016740,GO:0016757,GO:0016763,GO:0016787,GO:0019538,GO:0032991,GO:0034641,GO:0042219,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044273,GO:0044424,GO:0044464,GO:0051186,GO:0051187,GO:0061672,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368
EggNOG free text desc.glutamine-fructose-6-phosphate transaminase (isomerizing) activity
EggNOG OGsCOG0449@1,KOG1268@2759
EC5.4.2.3
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons2
Model size1038
Cds size537
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13730.2985.1prot_H-canaliculatus_F_contig13730.2985.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13730 851..2522 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929114.0325804-UTR-H-canaliculatus_F_contig13730:826..8501622929114.0325804-UTR-H-canaliculatus_F_contig13730:826..850Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13730 827..850 +
1696845684.1809037-UTR-H-canaliculatus_F_contig13730:826..8501696845684.1809037-UTR-H-canaliculatus_F_contig13730:826..850Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13730 827..850 +
1622929114.0883274-UTR-H-canaliculatus_F_contig13730:2522..29991622929114.0883274-UTR-H-canaliculatus_F_contig13730:2522..2999Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13730 2523..2999 +
1696845684.211243-UTR-H-canaliculatus_F_contig13730:2522..29991696845684.211243-UTR-H-canaliculatus_F_contig13730:2522..2999Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13730 2523..2999 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929114.047514-CDS-H-canaliculatus_F_contig13730:850..9851622929114.047514-CDS-H-canaliculatus_F_contig13730:850..985Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13730 851..985 +
1696845684.1919048-CDS-H-canaliculatus_F_contig13730:850..9851696845684.1919048-CDS-H-canaliculatus_F_contig13730:850..985Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13730 851..985 +
1622929114.0691915-CDS-H-canaliculatus_F_contig13730:2120..25221622929114.0691915-CDS-H-canaliculatus_F_contig13730:2120..2522Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13730 2121..2522 +
1696845684.2028148-CDS-H-canaliculatus_F_contig13730:2120..25221696845684.2028148-CDS-H-canaliculatus_F_contig13730:2120..2522Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13730 2121..2522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13730.2985.1

>prot_H-canaliculatus_F_contig13730.2985.1 ID=prot_H-canaliculatus_F_contig13730.2985.1|Name=mRNA_H-canaliculatus_F_contig13730.2985.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=179bp
MEVAEVDNTPGDVAKTAADKSAAAAASGAIPFLSSKQGNKAPDEKETPGV
RRPSTSPSVGFRGNALTLRDLPLYVGQFLSTFPGVDSLHLEVRQNGDLVL
KRGDTPASSGEGPLLWAHRATGSIGGRANGGLSCVVQGFLETLGSAERED
IPVDLIVKNGRWSVHRSIAVHLIEWFRI*
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mRNA from alignment at H-canaliculatus_F_contig13730:827..2999+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13730.2985.1 ID=mRNA_H-canaliculatus_F_contig13730.2985.1|Name=mRNA_H-canaliculatus_F_contig13730.2985.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2173bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13730:827..2999+ (Hapterophycus canaliculatus Oshoro5f female)
AAGTGTTGATCCACCTCAGATCACATGGAGGTGGCGGAGGTAGACAACAC
TCCTGGTGATGTGGCTAAGACCGCGGCAGACAAGTCTGCGGCGGCGGCAG
CTTCAGGCGCGATCCCGTTTTTGTCTTCGAAACAAGGAAACAAGGCTCCG
GACGAAAAGGTAAACTTGAACAGCACTCGTGCTTGCTACGACTGCACGTC
CTGCTGAGGCCCGCACCACAAAGTCTGTTGGGTACAAACGTCTTTTACGT
TTGGCACGTGATTGGCGCCGCCACCAGACGTAGTCATCACATCATCAAAC
CCCGTCAAGGGTGGCCGCAACGATTATTTGGCAACGGCGATATCACACCC
TTGGTTATCGCACTCTGGTGACAACAGTGGCTGTTGGTAATAGCGTATCA
AGTACTTGGTTTTGTAGCCGCGCCAATCACACCACTGGACTAGTCAGCGC
TGACTTGTCTATTGGTGTGACTGACGCGGCTGCGAGAGTGAGGTCGTGGG
TTCGATTTCGTCCCTGTGCGTTTTTTCTCTCTACATCGAGAGGACCTCGG
AGCGAGCCAGTACTCTCGGATAGTGACTCGTAGAGGTAGCGCCTCAGGTG
TGATCTGTGAGTGCGCGAAAATGCTTTAAAAACTGGAGCTAGCGCCACAG
CCGAAAAAGCACAACTAGCGCGTCCAAAGAGAACCTTAGACGAAAACAGC
GTTGGCGAGGCGTTCGGCCCCGGAAGCGAGGAAGACGAACGGTCTCGTGA
TCCACGACCAATTTTTTGTAGCCGCGTCAATCACACCAAAAAACTAGTCA
GCGTTTTGTAGCCGTAAAGCCAACCAATAAGACTACTTACTGACCAGATC
AGCGCTGACTTATCTCATGGTGTGACTGACGCGGCTACAGTTATCACACC
CCCTTGTTATCGCATCCTTCGTCGTCCCCCGGTCGCTAGGAGACGTTGGC
AGTAGAGCTATGACACCCCCTGGCTGTGTATCACACACCCTGATTACGGG
GCCCGTCAAACGCGTTATTGTCATTGTTGTTGCTGCTGCTGCTGCTGTTG
CTGTTGCAGCTGTTTGTCATGTTGTTGGTAGTCAAGATTCAAGTGGCTGC
TGCTGCTCTGCCCTGCAGCGTCACCCTCGTCTCACCAATACCATGAGGTA
GTCGCTTGGACGGTTTCGCTGCTGCCATGGCCGACACTGCTTGTTGCATC
CCGTTCCTGGACAAAGAACGCAATTGAGCAACCTCCTACCCGCACTTTCC
CTGCATCACGTCTTGTCTCCCGTTCTATCCATCCGAACATGCAGGAAACC
CCGGGCGTACGTCGACCGTCAACATCACCCTCGGTCGGCTTTCGCGGCAA
CGCCTTGACGCTACGTGACTTGCCCCTGTACGTGGGGCAGTTCCTGTCCA
CGTTTCCGGGCGTGGACTCTCTCCATTTGGAGGTGCGCCAGAACGGGGAT
CTGGTCTTGAAGCGCGGTGACACTCCCGCCTCCTCAGGGGAGGGACCGCT
CCTCTGGGCGCACCGGGCGACGGGTTCCATCGGTGGCAGGGCCAACGGGG
GGCTTAGTTGTGTAGTGCAGGGGTTCTTGGAAACTCTCGGGTCGGCCGAG
AGGGAAGACATTCCCGTCGATCTGATTGTCAAGAACGGGAGATGGAGTGT
GCACCGCAGCATTGCTGTTCATCTGATTGAGTGGTTTCGAATATAAGTAC
CAGGTATTTGGTACGGCGACAGCGTGCTGCTGCTGCCACTCCCCCTCCTC
TTGATTCTGCTGCTTTCGCGATGAGATACGCTGTGCGCTTTTCCAATGCT
TTTCTCCAAGATTGCGGCGGCGAGGGCTACCGTCCTTCTTTACTCTTTAC
TTTTCCTTTGTTTTCGTTTATTGCCTGCCACGGCGGCGCCGAACGAAGGG
CACAAAAGAGAAACGATACGTGCGGGTCGTCGCATACAACAATGGCTACG
TTCGGGTCGTCGCATACAACAATGGCTACAACTAACGACGAAAACAAGTG
GAGACAAAAAGGCGCGATGGATCCGGGACAACCCGCTCAAAGGAAAATGA
ACAAGTTCATCTGAGGGAAAACGACACGATAGGATATACCCTGGTCACTT
CGCGACACAGCAGGGTACCCACTGTAGAGCCTCCTAAATTGCTCGCGTCT
CATTGGTCAGCGGCAGCTTTTAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13730:827..2999+

>mRNA_H-canaliculatus_F_contig13730.2985.1 ID=mRNA_H-canaliculatus_F_contig13730.2985.1|Name=mRNA_H-canaliculatus_F_contig13730.2985.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1074bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13730:827..2999+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAGGTGGCGGAGGTAGACAACACTCCTGGTGATGTGGCTAAGACCGC
GGCAGACAAGTCTGCGGCGGCGGCAGCTTCAGGCGCGATCCCGTTTTTGT
CTTCGAAACAAGGAAACAAGGCTCCGGACGAAAAGATGGAGGTGGCGGAG
GTAGACAACACTCCTGGTGATGTGGCTAAGACCGCGGCAGACAAGTCTGC
GGCGGCGGCAGCTTCAGGCGCGATCCCGTTTTTGTCTTCGAAACAAGGAA
ACAAGGCTCCGGACGAAAAGGAAACCCCGGGCGTACGTCGACCGTCAACA
TCACCCTCGGTCGGCTTTCGCGGCAACGCCTTGACGCTACGTGACTTGCC
CCTGTACGTGGGGCAGTTCCTGTCCACGTTTCCGGGCGTGGACTCTCTCC
ATTTGGAGGTGCGCCAGAACGGGGATCTGGTCTTGAAGCGCGGTGACACT
CCCGCCTCCTCAGGGGAGGGACCGCTCCTCTGGGCGCACCGGGCGACGGG
TTCCATCGGTGGCAGGGCCAACGGGGGGCTTAGTTGTGTAGTGCAGGGGT
TCTTGGAAACTCTCGGGTCGGCCGAGAGGGAAGACATTCCCGTCGATCTG
ATTGTCAAGAACGGGAGATGGAGTGTGCACCGCAGCATTGCTGTTCATCT
GATTGAGTGGTTTCGAATATAAGAAACCCCGGGCGTACGTCGACCGTCAA
CATCACCCTCGGTCGGCTTTCGCGGCAACGCCTTGACGCTACGTGACTTG
CCCCTGTACGTGGGGCAGTTCCTGTCCACGTTTCCGGGCGTGGACTCTCT
CCATTTGGAGGTGCGCCAGAACGGGGATCTGGTCTTGAAGCGCGGTGACA
CTCCCGCCTCCTCAGGGGAGGGACCGCTCCTCTGGGCGCACCGGGCGACG
GGTTCCATCGGTGGCAGGGCCAACGGGGGGCTTAGTTGTGTAGTGCAGGG
GTTCTTGGAAACTCTCGGGTCGGCCGAGAGGGAAGACATTCCCGTCGATC
TGATTGTCAAGAACGGGAGATGGAGTGTGCACCGCAGCATTGCTGTTCAT
CTGATTGAGTGGTTTCGAATATAA
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