mRNA_H-canaliculatus_F_contig13728.2982.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13728.2982.1
Unique NamemRNA_H-canaliculatus_F_contig13728.2982.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13728.2982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13728contigH-canaliculatus_F_contig13728:262..2722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size570
Cds size546
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13728.2982.1prot_H-canaliculatus_F_contig13728.2982.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13728 286..2722 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929113.533053-UTR-H-canaliculatus_F_contig13728:261..2851622929113.533053-UTR-H-canaliculatus_F_contig13728:261..285Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13728 262..285 +
1696845683.7986865-UTR-H-canaliculatus_F_contig13728:261..2851696845683.7986865-UTR-H-canaliculatus_F_contig13728:261..285Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13728 262..285 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929113.554428-CDS-H-canaliculatus_F_contig13728:285..3831622929113.554428-CDS-H-canaliculatus_F_contig13728:285..383Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13728 286..383 +
1696845683.8080356-CDS-H-canaliculatus_F_contig13728:285..3831696845683.8080356-CDS-H-canaliculatus_F_contig13728:285..383Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13728 286..383 +
1622929113.5730016-CDS-H-canaliculatus_F_contig13728:1180..13131622929113.5730016-CDS-H-canaliculatus_F_contig13728:1180..1313Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13728 1181..1313 +
1696845683.8170698-CDS-H-canaliculatus_F_contig13728:1180..13131696845683.8170698-CDS-H-canaliculatus_F_contig13728:1180..1313Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13728 1181..1313 +
1622929113.589764-CDS-H-canaliculatus_F_contig13728:1598..17681622929113.589764-CDS-H-canaliculatus_F_contig13728:1598..1768Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13728 1599..1768 +
1696845683.8267906-CDS-H-canaliculatus_F_contig13728:1598..17681696845683.8267906-CDS-H-canaliculatus_F_contig13728:1598..1768Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13728 1599..1768 +
1622929113.6056514-CDS-H-canaliculatus_F_contig13728:2577..27221622929113.6056514-CDS-H-canaliculatus_F_contig13728:2577..2722Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13728 2578..2722 +
1696845683.8351214-CDS-H-canaliculatus_F_contig13728:2577..27221696845683.8351214-CDS-H-canaliculatus_F_contig13728:2577..2722Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13728 2578..2722 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13728.2982.1

>prot_H-canaliculatus_F_contig13728.2982.1 ID=prot_H-canaliculatus_F_contig13728.2982.1|Name=mRNA_H-canaliculatus_F_contig13728.2982.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=182bp
MADGWGKKQFRCGDLHEGCYKEDKRCGFGIYKWVNGDRYEGEWRNGRMHG
KGVKVMANGDVYNGTWENDKAEGNGVKVFACGDRHEGDYHEDKRHGYGCY
TWDSGDRYEGYWGEGRMSGKGVKYMANGDVYDGEWHDDKAHGWGMKAFAN
GDRHEGEYCLDLRQGCGTYHWANGDCYEGDWE
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mRNA from alignment at H-canaliculatus_F_contig13728:262..2722+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13728.2982.1 ID=mRNA_H-canaliculatus_F_contig13728.2982.1|Name=mRNA_H-canaliculatus_F_contig13728.2982.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2461bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13728:262..2722+ (Hapterophycus canaliculatus Oshoro5f female)
TTCGCAGGCGCGTGGAAAGGCGGCATGGCAGACGGGTGGGGTAAGAAACA
GTTCCGCTGCGGCGACCTTCACGAGGGCTGCTACAAGGAGGACAAGCGGT
GCGGCTTCGGCATCTACAAGTGGTGAGCGAACGACGCCGCGTCCGTCCCA
GCCTCTTTTTGCGTCGATTCGACTGTTGCTCGGGTGACTCTCGCGGCGCT
GGCGACGATGGTCGTCCCCTTGCTTTCGGTCCCTGACGGTGCCGCCTTCA
TGGGAAGGGTTCACCCCGTTCGGTCCTCGGTCAAGTCTCGAACGCATTTG
CCTGCGTCGGTGCACGCGGCATGCATGCATGCATGCATGCCCAGGCTTTT
TTTTTTCTTTTTTTGGAACGACCCGTTGTTAGAGGGAGAATCGGTGAGTG
AACGGCGTAGCAGTTTGTTCTATTGGCCGTTCTCGCCGCCGCAGTTCAAA
AATACGGAAATACGGCAGCTTTCCGTGGACAGTGCCAGCAGCTGCGGGAC
TCCACCCCACGTTGCCGTCGAAGAATGTTTTACGATGCGAGGGGAACGGA
AGGTTTGTACACGGGTGAACTCCTCGTGCCTCTCCCGCCCTGCCAGATTC
TCTCATCTTACTCTACACGGTGTCGAGCGTCTATCTTGCCGCCATTCGCC
AGAGCCGTCCTTCACGTTTTTTATCGCCGTGGTCGGCGATTGCGTTCGTC
GCTTTTGGCGCCACACGACCAGATTTCGAGAGACCCACCACCTGTGCTGC
CGCACGTATACTACTTGTGGTGTTTCTTGTACGCGGCGTCAGTTCCTCCC
GGGCAGTTCCGTCTCGCCTGACAGCACGTCGTCGTTTTTTCCCGCCGCCC
TGCGTTCGCCGGACGTCCCTCCGTCAACGCGCGTTGTGTGTCCGCGCGGA
ATGGCCCCGCGGGCGACAGGGTGAACGGAGATCGCTACGAAGGAGAGTGG
CGCAACGGCCGCATGCACGGCAAGGGCGTCAAGGTCATGGCCAACGGCGA
TGTGTACAACGGCACCTGGGAGAACGACAAGGCGGAGGGCAACGGCGTCA
AGGTCAGTCGGTGGGGCTCAACAATCCCGGCGGAACGCTGCTTCCGCCTC
GTCGCGCCCGGGAGTGGCGGTGTGTCCGGCTGCGGCCGCCGACGGTCTTC
TCGACGGAGGTGGTCTCGCACGCCTCGCTCGGCGGACGACGCTCCCAGCG
CCTCTGCTTTTTGTCTTCCACGGCGTTGTGCCGTGGCGGTGACGGCGCCC
CCCCCCCCGCGCCCGTTTTGACTCAGCCCTGAACATTTCTTGTGCATGCG
CGTGCGCGTGTGTGCGTGGGCGTCGAACTCTCACCAGGTGTTTGCTTGCG
GTGACCGCCACGAGGGCGACTACCACGAGGACAAGCGCCACGGGTACGGG
TGCTACACCTGGGACAGCGGCGATCGCTACGAGGGGTACTGGGGTGAAGG
GCGCATGTCCGGGAAGGGGGTGAAGTACATGGCTAACGGGGACGTCTACG
ACGGAGAGTGAGTGCGCGCGCTGTGCGGGGCCGGGCGGGGCGGAGCGGTT
TCTGGGGCGGTAGAGGTCGGTCCGCGGGTCTTGGGGAGTAGATCGTGTGT
AGGTTAAGGAAGGCTGGGTTCGTGAGGAGTTCCACGTGGGTGTGGGAGTG
CGCAGTCGGCAAGGGATCGGCCCATGGACGCTCACTCCTGCGTGTGTTCG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTT
TGATGTGAGCACCAAGCGCTGTGTCGTCGGGCGAGCGGTGTGTGCAGACC
GTGGCGTGTTGTGGGAGGTTGCCTCCGCAGACGTGACGCGGACGTTGCAC
GCCCTTGGCTGTGCGTCGTCGTGTTCAGTGCGTGTGTGAGCGTACACGCG
TTCACCGTATCCACTCACGTTTTTTTTTTTCTACAACGTCTCCTCTGTCC
AGTCTTTCGTTCCTCGCTTGTGACCACGTTGAATGATGACGGTGGAGCCA
TGCCATGCGGGGGGCGGCAACGGCACGAATCCAACTCGAGATGGTGTGGT
GTTAGCATGGCTAACTTGCGCGGTTGACGTGCCCCACTTGGGTTTGACCG
AGTGCATGGACCGTGCGCGTCCCAAGGATCTTACGTGTCGTACGGGCTCG
TTCTAGTGTTTTGACTGTAGTGCCCCTTTGACAGCTCGACCGTCCTGGAT
GAACGGGTTGTTCACCAAGGACGGCATGCCTCGAACGGTCTTGATGGCTG
ACGCGGACGCACAACGTCTAAGTGGCTAAAATCGCACGACTCTGCGTGGT
ACGTGCGGCACGGCAGGTGGCACGATGACAAGGCCCACGGCTGGGGCATG
AAGGCGTTCGCCAACGGAGACAGGCACGAGGGCGAGTACTGCCTCGACCT
ACGCCAGGGCTGCGGAACTTACCACTGGGCCAACGGGGACTGCTACGAGG
GGGACTGGGAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13728:262..2722+

>mRNA_H-canaliculatus_F_contig13728.2982.1 ID=mRNA_H-canaliculatus_F_contig13728.2982.1|Name=mRNA_H-canaliculatus_F_contig13728.2982.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1092bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13728:262..2722+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGCAGACGGGTGGGGTAAGAAACAGTTCCGCTGCGGCGACCTTCACGA
GGGCTGCTACAAGGAGGACAAGCGGTGCGGCTTCGGCATCTACAAGTGAT
GGCAGACGGGTGGGGTAAGAAACAGTTCCGCTGCGGCGACCTTCACGAGG
GCTGCTACAAGGAGGACAAGCGGTGCGGCTTCGGCATCTACAAGTGGGTG
AACGGAGATCGCTACGAAGGAGAGTGGCGCAACGGCCGCATGCACGGCAA
GGGCGTCAAGGTCATGGCCAACGGCGATGTGTACAACGGCACCTGGGAGA
ACGACAAGGCGGAGGGCAACGGCGTCAAGGGTGAACGGAGATCGCTACGA
AGGAGAGTGGCGCAACGGCCGCATGCACGGCAAGGGCGTCAAGGTCATGG
CCAACGGCGATGTGTACAACGGCACCTGGGAGAACGACAAGGCGGAGGGC
AACGGCGTCAAGGTGTTTGCTTGCGGTGACCGCCACGAGGGCGACTACCA
CGAGGACAAGCGCCACGGGTACGGGTGCTACACCTGGGACAGCGGCGATC
GCTACGAGGGGTACTGGGGTGAAGGGCGCATGTCCGGGAAGGGGGTGAAG
TACATGGCTAACGGGGACGTCTACGACGGAGAGTGTTTGCTTGCGGTGAC
CGCCACGAGGGCGACTACCACGAGGACAAGCGCCACGGGTACGGGTGCTA
CACCTGGGACAGCGGCGATCGCTACGAGGGGTACTGGGGTGAAGGGCGCA
TGTCCGGGAAGGGGGTGAAGTACATGGCTAACGGGGACGTCTACGACGGA
GAGTGGCACGATGACAAGGCCCACGGCTGGGGCATGAAGGCGTTCGCCAA
CGGAGACAGGCACGAGGGCGAGTACTGCCTCGACCTACGCCAGGGCTGCG
GAACTTACCACTGGGCCAACGGGGACTGCTACGAGGGGGACTGGGAGGTG
GCACGATGACAAGGCCCACGGCTGGGGCATGAAGGCGTTCGCCAACGGAG
ACAGGCACGAGGGCGAGTACTGCCTCGACCTACGCCAGGGCTGCGGAACT
TACCACTGGGCCAACGGGGACTGCTACGAGGGGGACTGGGAG
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