mRNA_H-canaliculatus_F_contig13717.2977.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13717.2977.1
Unique NamemRNA_H-canaliculatus_F_contig13717.2977.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13717.2977.1 vs. uniprot
Match: A0A6H5JZ97_9PHAE (CS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZ97_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 3.670e-23
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:   19 KVDSTTKISEYDGETQGTIRKIMFDQRQKTLGLPTSDELNAATLLDTAKGLPGSPF 186
            KVDSTTKISEYDGETQG IRKIMFDQRQK+LGLPTSDELNA  LL+ AK LPGSPF
Sbjct:  330 KVDSTTKISEYDGETQGAIRKIMFDQRQKSLGLPTSDELNADALLERAKVLPGSPF 385
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13717.2977.1 vs. uniprot
Match: A0A7S2SV46_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SV46_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 7.620e-18
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:   22 VDSTTKISEYDGETQGTIRKIMFDQRQKTLGLPTSDELNAATLLDTAKGLPGSPF 186
            VDST KI EYD ETQG IRKIMFDQ+QK+LGLPTSDEL    +L+ AK +PGSPF
Sbjct:  291 VDSTCKIDEYDPETQGAIRKIMFDQKQKSLGLPTSDELTTEAILEKAKYMPGSPF 345
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13717.2977.1 vs. uniprot
Match: A0A835Z5P8_9STRA (Nuclear migration protein nudC-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5P8_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 6.210e-17
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:   19 KVDSTTKISEYDGETQGTIRKIMFDQRQKTLGLPTSDELNAATLLDTAKGLPGSPF 186
            KVDST K+ +YD +TQ  IRKIMFDQ+QK +GLPTSDEL A+ LL+ AK  PGSPF
Sbjct:  200 KVDSTCKVGDYDEDTQAAIRKIMFDQKQKRMGLPTSDELTASDLLEKAKLAPGSPF 255
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13717.2977.1 vs. uniprot
Match: A0A7R9U371_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U371_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.320e-16
Identity = 39/56 (69.64%), Postives = 43/56 (76.79%), Query Frame = 1 
Query:   19 KVDSTTKISEYDGETQGTIRKIMFDQRQKTLGLPTSDELNAATLLDTAKGLPGSPF 186
            +VDS TKI +YD ETQG IRKIMFDQ+QK LGLPTSDEL    L + AK  PGSPF
Sbjct:  275 QVDSRTKIDDYDDETQGVIRKIMFDQKQKALGLPTSDELEKQELFERAKFAPGSPF 330
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13717.2977.1 vs. uniprot
Match: A0A7S2FU99_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FU99_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 1.870e-16
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   22 VDSTTKISEYDGETQGTIRKIMFDQRQKTLGLPTSDELNAATLLDTAKGLPGSPF 186
            VDST KI EYD ETQG IRKIMFDQ+QK +GL +SDE+    L++ AK LPGSPF
Sbjct:   77 VDSTCKIDEYDAETQGAIRKIMFDQKQKAMGLKSSDEIAQDELIEKAKYLPGSPF 131
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13717.2977.1 vs. uniprot
Match: A0A7S3XL32_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XL32_HETAK)

HSP 1 Score: 79.3 bits (194), Expect = 5.510e-16
Identity = 38/56 (67.86%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:   19 KVDSTTKISEYDGETQGTIRKIMFDQRQKTLGLPTSDELNAATLLDTAKGLPGSPF 186
            KVDSTTK+ +YD ETQ TIRKIMFDQ+QK LGLPTS+EL    +L+ AK   GSPF
Sbjct:  289 KVDSTTKVEDYDEETQATIRKIMFDQKQKALGLPTSEELKMQGILEQAKYAKGSPF 344
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13717.2977.1 vs. uniprot
Match: A0A0G4GJ83_9ALVE (CS domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GJ83_9ALVE)

HSP 1 Score: 79.0 bits (193), Expect = 9.510e-16
Identity = 39/56 (69.64%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:   19 KVDSTTKISEYDGETQGTIRKIMFDQRQKTLGLPTSDELNAATLLDTAKGLPGSPF 186
            KVDST KI EYDGETQG IRKI+FDQ QK  GLPTSDEL   +LL+ A    GSPF
Sbjct:  331 KVDSTKKIEEYDGETQGAIRKILFDQNQKRKGLPTSDELKTQSLLEKAWDAEGSPF 386
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13717.2977.1 vs. uniprot
Match: A0A7S3NQ58_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NQ58_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.210e-15
Identity = 39/56 (69.64%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:   19 KVDSTTKISEYDGETQGTIRKIMFDQRQKTLGLPTSDELNAATLLDTAKGLPGSPF 186
            KVDS+ KI EYD  TQ TIRKIMFDQRQK  GLPTSDE+    LL+  K LPGSPF
Sbjct:  221 KVDSSKKIDEYDEYTQATIRKIMFDQRQKARGLPTSDEIQNNELLEKVKYLPGSPF 276
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13717.2977.1 vs. uniprot
Match: A0A2R5GTI8_9STRA (Nuclear movement protein nudC n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GTI8_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 8.460e-15
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:   19 KVDSTTKISEYDGETQGTIRKIMFDQRQKTLGLPTSDELNAATLLDTAKGLPGSPF 186
            +VDST ++ EYD  TQ TIRK+MFDQRQK+ GLPTSDEL    +L  A  LPGSPF
Sbjct:  179 QVDSTRRMEEYDEATQATIRKVMFDQRQKSQGLPTSDELAKDQILQDASQLPGSPF 234
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13717.2977.1 vs. uniprot
Match: A0A812NSX4_SYMMI (NUDCD3 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812NSX4_SYMMI)

HSP 1 Score: 73.9 bits (180), Expect = 1.760e-14
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:   19 KVDSTTKISEYDGETQGTIRKIMFDQRQKTLGLPTSDELNAATLLDTAKGLPGSPF 186
            KV+ST K+ EYDGETQG IRKIMFDQ QK  G P+SD++  A ++  A   PGSPF
Sbjct:  141 KVESTRKMEEYDGETQGAIRKIMFDQNQKVQGKPSSDQIRTAEMMKDAWNAPGSPF 196
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13717.2977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZ97_9PHAE3.670e-2387.50CS domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A7S2SV46_9STRA7.620e-1872.73Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835Z5P8_9STRA6.210e-1767.86Nuclear migration protein nudC-like protein n=1 Ta... [more]
A0A7R9U371_9STRA1.320e-1669.64Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2FU99_9STRA1.870e-1667.27Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3XL32_HETAK5.510e-1667.86Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0G4GJ83_9ALVE9.510e-1669.64CS domain-containing protein n=1 Tax=Chromera veli... [more]
A0A7S3NQ58_9STRA1.210e-1569.64Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A2R5GTI8_9STRA8.460e-1564.29Nuclear movement protein nudC n=1 Tax=Hondaea ferm... [more]
A0A812NSX4_SYMMI1.760e-1460.71NUDCD3 protein n=1 Tax=Symbiodinium microadriaticu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13717contigH-canaliculatus_F_contig13717:2542..2727 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.4
Seed ortholog evalue6.4e-19
Seed eggNOG ortholog2880.D8LL35
Preferred nameNUDCD3
KEGG koko:K21867
KEGG TC1.A.1.4
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005856,GO:0005868,GO:0005875,GO:0006457,GO:0006810,GO:0006996,GO:0007097,GO:0008104,GO:0008150,GO:0009987,GO:0012505,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030286,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044380,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044782,GO:0046907,GO:0051082,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0060271,GO:0070727,GO:0070925,GO:0071539,GO:0071840,GO:0072698,GO:0120031,GO:0120036,GO:1902494,GO:1905508,GO:1905793
EggNOG free text desc.unfolded protein binding
EggNOG OGsKOG2265@1,KOG2265@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHSP20-like chaperone
Ec32 orthologEc-26_003380.1
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929112.8529832-CDS-H-canaliculatus_F_contig13717:2541..27271622929112.8529832-CDS-H-canaliculatus_F_contig13717:2541..2727Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13717 2542..2727 -
1696845683.5202217-CDS-H-canaliculatus_F_contig13717:2541..27271696845683.5202217-CDS-H-canaliculatus_F_contig13717:2541..2727Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13717 2542..2727 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13717.2977.1prot_H-canaliculatus_F_contig13717.2977.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13717 2542..2727 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13717.2977.1

>prot_H-canaliculatus_F_contig13717.2977.1 ID=prot_H-canaliculatus_F_contig13717.2977.1|Name=mRNA_H-canaliculatus_F_contig13717.2977.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=62bp
PFFFPVKVDSTTKISEYDGETQGTIRKIMFDQRQKTLGLPTSDELNAATL
LDTAKGLPGSPF
back to top

mRNA from alignment at H-canaliculatus_F_contig13717:2542..2727-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13717.2977.1 ID=mRNA_H-canaliculatus_F_contig13717.2977.1|Name=mRNA_H-canaliculatus_F_contig13717.2977.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=186bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13717:2542..2727- (Hapterophycus canaliculatus Oshoro5f female)
CCCTTTTTTTTTCCTGTCAAGGTCGACTCGACCACAAAAATCAGCGAGTA
CGACGGAGAGACCCAGGGAACGATCCGCAAGATCATGTTCGACCAGCGGC
AGAAGACGCTTGGCCTTCCCACAAGCGACGAGCTCAATGCCGCCACCCTT
CTGGACACGGCCAAGGGTCTGCCAGGCAGCCCCTTC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13717:2542..2727-

>mRNA_H-canaliculatus_F_contig13717.2977.1 ID=mRNA_H-canaliculatus_F_contig13717.2977.1|Name=mRNA_H-canaliculatus_F_contig13717.2977.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=372bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13717:2542..2727- (Hapterophycus canaliculatus Oshoro5f female)
CCCTTTTTTTTTCCTGTCAAGGTCGACTCGACCACAAAAATCAGCGAGTA
CGACGGAGAGACCCAGGGAACGATCCGCAAGATCATGTTCGACCAGCGGC
AGAAGACGCTTGGCCTTCCCACAAGCGACGAGCTCAATGCCGCCACCCTT
CTGGACACGGCCAAGGGTCTGCCAGGCAGCCCCTTCCCCTTTTTTTTTCC
TGTCAAGGTCGACTCGACCACAAAAATCAGCGAGTACGACGGAGAGACCC
AGGGAACGATCCGCAAGATCATGTTCGACCAGCGGCAGAAGACGCTTGGC
CTTCCCACAAGCGACGAGCTCAATGCCGCCACCCTTCTGGACACGGCCAA
GGGTCTGCCAGGCAGCCCCTTC
back to top