mRNA_H-canaliculatus_F_contig13712.2975.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13712.2975.1
Unique NamemRNA_H-canaliculatus_F_contig13712.2975.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13712.2975.1 vs. uniprot
Match: A0A6H5JTW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTW0_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 3.950e-18
Identity = 55/120 (45.83%), Postives = 68/120 (56.67%), Query Frame = 1 
Query:    1 PGFDDFLRRLGSCGLRYRLHRIAGVLPAEVLEEIRLVVSATIVGGPVKS----------RDADTQTSQACAGNGGGDGSESEGGVIAGLGEAAAGGAGTVAPASGAGFDEFVLCRVFRAS 330
            PGFDDFL RLGSCGLRYRL R++ +LP ++LEEIR   S  IVGGPV S          RD+     + C G  G DG ES    +     A A      A ++   FDEFV+C +FRA+
Sbjct:  274 PGFDDFLHRLGSCGLRYRLRRMSDILPGDLLEEIRRSASIDIVGGPVASSRTPSCVNAARDSVGGAKEDCGGGTGVDGGESPSRSVVAAATADA------AASTCTRFDEFVMCEIFRAT 387
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BLAST of mRNA_H-canaliculatus_F_contig13712.2975.1 vs. uniprot
Match: D8LM85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM85_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.770e-15
Identity = 55/121 (45.45%), Postives = 66/121 (54.55%), Query Frame = 1 
Query:    1 PGFDDFLRRLGSCGLRYRLHRIAGVLPAEVLEEIRLVVSATIVGGPVKS----------RDADTQTSQACAGNGGGDGSES-EGGVIAGLGEAAAGGAGTVAPASGAGFDEFVLCRVFRAS 330
            PGFDDFL RLGSCGLRYRL R++ +LP ++LEEI    S  IVGGPV S          RD+     + C G  G D  +S  G VIA        G  T        FDEFV+C +FRA+
Sbjct:  276 PGFDDFLHRLGSCGLRYRLRRMSDILPGDLLEEIHQSASIDIVGGPVTSSRTPLCVDAARDSVGGGEEDCDGGKGVDAGKSPSGSVIAAXXXXXXAGTCTR-------FDEFVMCEIFRAT 389
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13712.2975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTW0_9PHAE3.950e-1845.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LM85_ECTSI1.770e-1545.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13712contigH-canaliculatus_F_contig13712:1095..1430 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score83.2
Seed ortholog evalue8.5e-14
Seed eggNOG ortholog2880.D8LM85
KEGG koko:K21806
EggNOG free text desc.Lysine methyltransferase
EggNOG OGs2E8GN@1,2SEYU@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019
Hectar predicted targeting categoryother localisation
Exons1
Model size337
Cds size336
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929112.6989202-CDS-H-canaliculatus_F_contig13712:1094..14301622929112.6989202-CDS-H-canaliculatus_F_contig13712:1094..1430Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13712 1095..1430 -
1696845683.4655437-CDS-H-canaliculatus_F_contig13712:1094..14301696845683.4655437-CDS-H-canaliculatus_F_contig13712:1094..1430Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13712 1095..1430 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13712.2975.1prot_H-canaliculatus_F_contig13712.2975.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13712 1095..1430 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13712.2975.1

>prot_H-canaliculatus_F_contig13712.2975.1 ID=prot_H-canaliculatus_F_contig13712.2975.1|Name=mRNA_H-canaliculatus_F_contig13712.2975.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=112bp
PGFDDFLRRLGSCGLRYRLHRIAGVLPAEVLEEIRLVVSATIVGGPVKSR
DADTQTSQACAGNGGGDGSESEGGVIAGLGEAAAGGAGTVAPASGAGFDE
FVLCRVFRASA*
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mRNA from alignment at H-canaliculatus_F_contig13712:1095..1430-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13712.2975.1 ID=mRNA_H-canaliculatus_F_contig13712.2975.1|Name=mRNA_H-canaliculatus_F_contig13712.2975.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=336bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13712:1095..1430- (Hapterophycus canaliculatus Oshoro5f female)
CCCGGGTTCGACGATTTCTTGCGTAGGCTCGGGTCGTGTGGCCTGCGATA
CCGTCTTCACAGGATAGCAGGCGTCCTTCCTGCCGAGGTTTTGGAAGAAA
TCCGCCTTGTGGTTTCGGCAACCATTGTTGGCGGCCCCGTGAAATCCCGA
GACGCTGACACGCAAACTAGCCAAGCATGTGCTGGGAACGGTGGCGGCGA
TGGAAGTGAGAGCGAGGGCGGGGTCATCGCGGGCCTCGGCGAAGCTGCAG
CGGGGGGGGCGGGGACTGTTGCTCCCGCAAGCGGCGCGGGTTTCGACGAG
TTCGTGCTTTGCAGAGTGTTTCGCGCCTCCGCTTAA
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13712:1095..1430-

>mRNA_H-canaliculatus_F_contig13712.2975.1 ID=mRNA_H-canaliculatus_F_contig13712.2975.1|Name=mRNA_H-canaliculatus_F_contig13712.2975.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=672bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13712:1095..1430- (Hapterophycus canaliculatus Oshoro5f female)
CCCGGGTTCGACGATTTCTTGCGTAGGCTCGGGTCGTGTGGCCTGCGATA
CCGTCTTCACAGGATAGCAGGCGTCCTTCCTGCCGAGGTTTTGGAAGAAA
TCCGCCTTGTGGTTTCGGCAACCATTGTTGGCGGCCCCGTGAAATCCCGA
GACGCTGACACGCAAACTAGCCAAGCATGTGCTGGGAACGGTGGCGGCGA
TGGAAGTGAGAGCGAGGGCGGGGTCATCGCGGGCCTCGGCGAAGCTGCAG
CGGGGGGGGCGGGGACTGTTGCTCCCGCAAGCGGCGCGGGTTTCGACGAG
TTCGTGCTTTGCAGAGTGTTTCGCGCCTCCGCTTAACCCGGGTTCGACGA
TTTCTTGCGTAGGCTCGGGTCGTGTGGCCTGCGATACCGTCTTCACAGGA
TAGCAGGCGTCCTTCCTGCCGAGGTTTTGGAAGAAATCCGCCTTGTGGTT
TCGGCAACCATTGTTGGCGGCCCCGTGAAATCCCGAGACGCTGACACGCA
AACTAGCCAAGCATGTGCTGGGAACGGTGGCGGCGATGGAAGTGAGAGCG
AGGGCGGGGTCATCGCGGGCCTCGGCGAAGCTGCAGCGGGGGGGGCGGGG
ACTGTTGCTCCCGCAAGCGGCGCGGGTTTCGACGAGTTCGTGCTTTGCAG
AGTGTTTCGCGCCTCCGCTTAA
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