mRNA_H-canaliculatus_F_contig13709.2972.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13709.2972.1
Unique NamemRNA_H-canaliculatus_F_contig13709.2972.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13709.2972.1 vs. uniprot
Match: D7G3P3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P3_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 4.900e-22
Identity = 50/90 (55.56%), Postives = 62/90 (68.89%), Query Frame = 1 
Query:   40 MPSPYGRERRSSGSGIPAGWTYATDGKGQVLWYCPPGGGTANRCRNKVQLQMYWRKKPFSSKQILDYFSFKSKDAPAHWKVVKVDSNGKD 309
            M SP  R RRSS  G  AGWTYA+DGKGQVLWYCPP GG  +RC +K QL  YW +   S     D F+FK+ DAP HWK ++V+S+G++
Sbjct:    1 MRSPARRVRRSSSHGR-AGWTYASDGKGQVLWYCPPDGGKDDRCGSKPQLIRYWAQSG-SKPPKDDQFTFKTVDAPLHWKKIEVNSDGEE 88
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BLAST of mRNA_H-canaliculatus_F_contig13709.2972.1 vs. uniprot
Match: A0A6H5L6X0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6X0_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.600e-20
Identity = 49/93 (52.69%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:   40 MPSPYGRERRSSGSGIPAGWTYATDGKGQVLWYCPPGGGTANRCRNKVQLQMYWRKKPFSSKQILDYFSFKSKDAPAHWKVVKVDSNGKDCEQ 318
            M SP  R RRSS  G  AGWTYA+DGKGQVLWYCPP GG  +RC +K QL  YW +   S     D F+F++ DAP HWK ++V+S+G++ ++
Sbjct:    1 MRSPVRRVRRSSSRGH-AGWTYASDGKGQVLWYCPPYGGKNDRCGSKPQLIRYWAQSG-SKPPKDDQFTFRTADAPLHWKKIEVNSDGEEEDE 91
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BLAST of mRNA_H-canaliculatus_F_contig13709.2972.1 vs. uniprot
Match: D8LQA3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQA3_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 5.220e-12
Identity = 31/63 (49.21%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:   97 WTYATDGKGQVLWYCPPGGGTANRCRNKVQLQMYWRKKPFSSKQILDYFSFKSKDAPAHWKVV 285
            WTY + GK +VLWYCPPGGG A+RC +  QLQ Y R++ + + ++   F+F  KDAP  W+ V
Sbjct: 1037 WTYGSFGKERVLWYCPPGGGEADRCTSSEQLQAYLRER-YGNGRVPGQFTFSGKDAPPQWERV 1098
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13709.2972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G3P3_ECTSI4.900e-2255.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6X0_9PHAE1.600e-2052.69Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LQA3_ECTSI5.220e-1249.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13709contigH-canaliculatus_F_contig13709:243..571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size331
Cds size327
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929112.2477028-CDS-H-canaliculatus_F_contig13709:242..5691622929112.2477028-CDS-H-canaliculatus_F_contig13709:242..569Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13709 243..569 +
1696845683.2507443-CDS-H-canaliculatus_F_contig13709:242..5691696845683.2507443-CDS-H-canaliculatus_F_contig13709:242..569Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13709 243..569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13709.2972.1prot_H-canaliculatus_F_contig13709.2972.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13709 243..569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13709.2972.1

>prot_H-canaliculatus_F_contig13709.2972.1 ID=prot_H-canaliculatus_F_contig13709.2972.1|Name=mRNA_H-canaliculatus_F_contig13709.2972.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=109bp
FFDRTALSESERRMPSPYGRERRSSGSGIPAGWTYATDGKGQVLWYCPPG
GGTANRCRNKVQLQMYWRKKPFSSKQILDYFSFKSKDAPAHWKVVKVDSN
GKDCEQGGG
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mRNA from alignment at H-canaliculatus_F_contig13709:243..571+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13709.2972.1 ID=mRNA_H-canaliculatus_F_contig13709.2972.1|Name=mRNA_H-canaliculatus_F_contig13709.2972.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=329bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13709:243..571+ (Hapterophycus canaliculatus Oshoro5f female)
TTTTTCGATCGCACTGCGCTCTCTGAGAGCGAGCGGCGGATGCCCTCACC
CTACGGGCGCGAACGCCGGAGTAGCGGCAGCGGCATCCCGGCGGGGTGGA
CATATGCTACCGATGGCAAGGGCCAAGTGCTGTGGTATTGCCCTCCCGGT
GGTGGTACAGCCAACAGGTGCAGGAACAAGGTCCAGCTTCAGATGTACTG
GCGCAAAAAACCATTTAGCAGCAAGCAGATCCTGGACTACTTCAGTTTCA
AGTCGAAGGATGCGCCGGCTCATTGGAAGGTAGTCAAGGTGGACAGCAAT
GGAAAAGATTGCGAGCAAGGAGGAGGAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13709:243..571+

>mRNA_H-canaliculatus_F_contig13709.2972.1 ID=mRNA_H-canaliculatus_F_contig13709.2972.1|Name=mRNA_H-canaliculatus_F_contig13709.2972.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=654bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13709:243..571+ (Hapterophycus canaliculatus Oshoro5f female)
TTTTTCGATCGCACTGCGCTCTCTGAGAGCGAGCGGCGGATGCCCTCACC
CTACGGGCGCGAACGCCGGAGTAGCGGCAGCGGCATCCCGGCGGGGTGGA
CATATGCTACCGATGGCAAGGGCCAAGTGCTGTGGTATTGCCCTCCCGGT
GGTGGTACAGCCAACAGGTGCAGGAACAAGGTCCAGCTTCAGATGTACTG
GCGCAAAAAACCATTTAGCAGCAAGCAGATCCTGGACTACTTCAGTTTCA
AGTCGAAGGATGCGCCGGCTCATTGGAAGGTAGTCAAGGTGGACAGCAAT
GGAAAAGATTGCGAGCAAGGAGGAGGATTTTTCGATCGCACTGCGCTCTC
TGAGAGCGAGCGGCGGATGCCCTCACCCTACGGGCGCGAACGCCGGAGTA
GCGGCAGCGGCATCCCGGCGGGGTGGACATATGCTACCGATGGCAAGGGC
CAAGTGCTGTGGTATTGCCCTCCCGGTGGTGGTACAGCCAACAGGTGCAG
GAACAAGGTCCAGCTTCAGATGTACTGGCGCAAAAAACCATTTAGCAGCA
AGCAGATCCTGGACTACTTCAGTTTCAAGTCGAAGGATGCGCCGGCTCAT
TGGAAGGTAGTCAAGGTGGACAGCAATGGAAAAGATTGCGAGCAAGGAGG
AGGA
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