mRNA_H-canaliculatus_F_contig13700.2970.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13700.2970.1
Unique NamemRNA_H-canaliculatus_F_contig13700.2970.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13700.2970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13700contigH-canaliculatus_F_contig13700:1049..1452 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size406
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929112.0608764-CDS-H-canaliculatus_F_contig13700:1048..13901622929112.0608764-CDS-H-canaliculatus_F_contig13700:1048..1390Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13700 1049..1390 +
1696845683.189795-CDS-H-canaliculatus_F_contig13700:1048..13901696845683.189795-CDS-H-canaliculatus_F_contig13700:1048..1390Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13700 1049..1390 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929112.0771806-UTR-H-canaliculatus_F_contig13700:1390..14521622929112.0771806-UTR-H-canaliculatus_F_contig13700:1390..1452Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13700 1391..1452 +
1696845683.198707-UTR-H-canaliculatus_F_contig13700:1390..14521696845683.198707-UTR-H-canaliculatus_F_contig13700:1390..1452Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13700 1391..1452 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13700.2970.1prot_H-canaliculatus_F_contig13700.2970.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13700 1049..1390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13700.2970.1

>prot_H-canaliculatus_F_contig13700.2970.1 ID=prot_H-canaliculatus_F_contig13700.2970.1|Name=mRNA_H-canaliculatus_F_contig13700.2970.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=114bp
EGGQGHISLCPYTPRWRKCHIYSTPTFCIAVKSQHKSERGCRGVAFVRTV
IFTRSPLDNRNKSAFSQQSPPHVADSSNCYYCRKGSISLQFSCTLFSVRI
GRELYVMGFLSFF*
back to top

mRNA from alignment at H-canaliculatus_F_contig13700:1049..1452+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13700.2970.1 ID=mRNA_H-canaliculatus_F_contig13700.2970.1|Name=mRNA_H-canaliculatus_F_contig13700.2970.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=404bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13700:1049..1452+ (Hapterophycus canaliculatus Oshoro5f female)
GAAGGCGGTCAAGGTCACATTTCATTGTGTCCGTATACTCCGAGGTGGCG
AAAGTGTCACATTTATTCCACGCCCACCTTTTGCATTGCCGTAAAATCTC
AACACAAGAGTGAGAGAGGATGCAGAGGTGTTGCGTTCGTTCGCACGGTC
ATTTTCACCCGTTCGCCGCTTGACAACCGGAACAAGAGTGCTTTCTCTCA
ACAATCACCTCCGCATGTTGCAGATTCTTCGAACTGCTACTACTGTAGAA
AAGGGTCCATCTCTCTTCAGTTCAGCTGTACCTTGTTTTCCGTCAGAATC
GGTCGGGAGTTGTATGTGATGGGATTCTTATCGTTCTTTTGAAAGGCTAG
GCCTCGCACGTCATACATGTAGCCTTTGCGAAATGCCTCCAGCGAAATGC
CTCC
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13700:1049..1452+

>mRNA_H-canaliculatus_F_contig13700.2970.1 ID=mRNA_H-canaliculatus_F_contig13700.2970.1|Name=mRNA_H-canaliculatus_F_contig13700.2970.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=684bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13700:1049..1452+ (Hapterophycus canaliculatus Oshoro5f female)
GAAGGCGGTCAAGGTCACATTTCATTGTGTCCGTATACTCCGAGGTGGCG
AAAGTGTCACATTTATTCCACGCCCACCTTTTGCATTGCCGTAAAATCTC
AACACAAGAGTGAGAGAGGATGCAGAGGTGTTGCGTTCGTTCGCACGGTC
ATTTTCACCCGTTCGCCGCTTGACAACCGGAACAAGAGTGCTTTCTCTCA
ACAATCACCTCCGCATGTTGCAGATTCTTCGAACTGCTACTACTGTAGAA
AAGGGTCCATCTCTCTTCAGTTCAGCTGTACCTTGTTTTCCGTCAGAATC
GGTCGGGAGTTGTATGTGATGGGATTCTTATCGTTCTTTTGAGAAGGCGG
TCAAGGTCACATTTCATTGTGTCCGTATACTCCGAGGTGGCGAAAGTGTC
ACATTTATTCCACGCCCACCTTTTGCATTGCCGTAAAATCTCAACACAAG
AGTGAGAGAGGATGCAGAGGTGTTGCGTTCGTTCGCACGGTCATTTTCAC
CCGTTCGCCGCTTGACAACCGGAACAAGAGTGCTTTCTCTCAACAATCAC
CTCCGCATGTTGCAGATTCTTCGAACTGCTACTACTGTAGAAAAGGGTCC
ATCTCTCTTCAGTTCAGCTGTACCTTGTTTTCCGTCAGAATCGGTCGGGA
GTTGTATGTGATGGGATTCTTATCGTTCTTTTGA
back to top