mRNA_H-canaliculatus_F_contig1370.2968.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1370.2968.1 vs. uniprot
Match: D7G362_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G362_ECTSI) HSP 1 Score: 420 bits (1080), Expect = 1.140e-137 Identity = 225/298 (75.50%), Postives = 254/298 (85.23%), Query Frame = 2
Query: 182 LEKMHQELDAMGRRLKRAGVEWKGRR------RDVHQDIASLFGGVSQAVGGGVAFVAVLAFSQALQGFALRVSCSTPLGLPTALGFTTVAVASATSIRVAEGMSSGLQASSRRGSQDGSDSWRSLRHVAERPVTSGEIGAGSFGLVLYRALGGRFSSVAPSALHMPGAFSRLSASLPATLEYASDAKRQALAALGKNFGCHTCGTKAPATFIADHMPPLKTVKLANAKLWRKALRRTVAQRFYPQCQSCSTLQSAAVRSGTTTFKYHVTLAALRPYHATGALLVLGNLLLVGQQMQK 1057
L+ M +EL+++ RRLKRAG+EWKGRR R + L G++QAVGGG AFVAVLA SQALQGFALRVSCS+PLGLPTALGF TVA AS S+RVAEG+SSGL+A+S + SQ SD WRS+ AE+P SGEIGA SFGLVL+RALGGRFSSVAPSALHMPGAFSRLSASLPATLEYASD KRQALA LGKNFGCHTCGT+APATFIADHMPPLKTVKLANAKLWR+ALR+TV+QRFYPQCQ+CSTLQSAAVRSG TT +YH TLAALRPYHATG LLVLG+L+L Q+ ++
Sbjct: 4 LDDMSEELNSVRRRLKRAGIEWKGRRSTGGGRRGAKGTSSVLASGITQAVGGGGAFVAVLALSQALQGFALRVSCSSPLGLPTALGFATVAAASVASVRVAEGISSGLEAASSKDSQRISDPWRSMLEAAEQPANSGEIGASSFGLVLFRALGGRFSSVAPSALHMPGAFSRLSASLPATLEYASDGKRQALATLGKNFGCHTCGTRAPATFIADHMPPLKTVKLANAKLWRRALRQTVSQRFYPQCQACSTLQSAAVRSGQTTLRYHFTLAALRPYHATGGLLVLGSLVLAQQRQRR 301
BLAST of mRNA_H-canaliculatus_F_contig1370.2968.1 vs. uniprot
Match: A0A835YVL4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVL4_9STRA) HSP 1 Score: 187 bits (475), Expect = 1.990e-50 Identity = 115/232 (49.57%), Postives = 147/232 (63.36%), Query Frame = 2
Query: 341 LAFSQALQGFALRVSCSTPLGLPTALGFTTVAVASATSIRVAEGMSSGLQASSRRGSQDGSDSWRSLRHVAERPVTSGEIGAGSFGLVLYRALGGRFSSVAPSALHMPGAFSRLSASLPATLEYASDAKRQALAALGKNFGCHTCGTKAPATFIADHMPPLKTVKLANAKLWRKALRRTVAQRFYPQCQSCSTLQSAAVRSGTTTFKYHVTLAALRPYHATGALLVLGNLLL 1036
L SQA+QG LRV+ STPLG+P ALGF TVA AS ++ V+E +S+ L + + + +S A P + E A +FGL L++ LGG F +APS + GAFSR ASLPATL YA+ +R + ALG+ +GCH+CG +A A + ADHMPPLK VK ANA+LWR+ TV QRFYPQC+ CS +Q+ VR+ KYH L R YHATG LLV G L L
Sbjct: 3 LNLSQAVQGAVLRVAASTPLGIPNALGFVTVAGASLVALHVSEAVSTALTTGNLQLAV------QSTIETASDPGPA-EASAVAFGLALFKCLGGTFGGIAPSLIDNLGAFSRFKASLPATLLYATTEERGVINALGETYGCHSCGRRAGAKYNADHMPPLKYVKKANARLWRRVTGLTVTQRFYPQCKPCSDIQAQVVRADGRFVKYHHPLTVHR-YHATGLLLVAGVLCL 226
BLAST of mRNA_H-canaliculatus_F_contig1370.2968.1 vs. uniprot
Match: W4HCU3_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4HCU3_9STRA) HSP 1 Score: 135 bits (339), Expect = 5.100e-31 Identity = 75/161 (46.58%), Postives = 94/161 (58.39%), Query Frame = 2
Query: 539 LRHVAERPVTSGEIGAGSFGLVLYRALGGRFSSVAPSALHMPGAFSRLSASLPATLEYASDAKRQALAALGKNFGCHTCGTKAPATFIADHMPPLKTVKLANAKLWRKALRRTVAQRFYPQCQSCSTLQSAAVRSGTTTFKYHVTLAALRPYHATGALLVL 1021
LR PV A + GL+L+R LGGRF S+APS PGAF + SLPATLEYA R + + G+ +GCHTCG ++ A F ADH PP+ K N +LW + + V QR+YPQC CS +Q A V+ K H L ALR YHATG +VL
Sbjct: 91 LRRTDPTPVQM--TAAAATGLLLFRLLGGRFRSLAPSDFRHPGAFGHANISLPATLEYADGNARAVIQSFGRLYGCHTCGVRS-AKFHADHQPPVMVAKAENERLWNRLIAGPVVQRYYPQCDGCSNIQGAQVKKNAQKLKLH--LWALRGYHATGFWMVL 246
BLAST of mRNA_H-canaliculatus_F_contig1370.2968.1 vs. uniprot
Match: A0A0G4F4F2_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4F4F2_9ALVE) HSP 1 Score: 127 bits (320), Expect = 1.850e-28 Identity = 112/291 (38.49%), Postives = 145/291 (49.83%), Query Frame = 2
Query: 302 SQAVGGGVAFVAVLAFSQALQGFALRVSCSTPLGLPTA--LGFTTVAVASATSIRVAEGMSSGLQASSRRGSQDGSDSWRSL--RHVAE-----------------RPVTSGE-----IGAGSF-----GLVLYRALGGRFSSVAPSALHMPGAFSRLSASLPATLEYASDAKRQALAALGKNFGCHTCGTKAPA-TFIADHMPPLK----------------TVKLANAKLWRKALRRTVA---QRFYPQCQSCSTLQSAAVRSGTTTFKYHVTLAALRPYHATGALLVL 1021
++ V GG++F+ V A Q++Q + L +S STPL P+ LG +VAS R + + G SW ++ R+ AE +P +G + + F GL+ + LGGRFSS+APS L MPGA SRL ASLPAT EYA+D +R L LG FGCH+CG K FIADH PPLK TV L + K W L V QRF+PQC SCS LQS AVR G H+T +LR +H +GAL+ L
Sbjct: 33 AETVAGGLSFLCVTAAVQSVQ-YGLSISSSTPLLAPSCGFLGICAASVASCVMSRATGAVVGDFVKHRQETRGKGKFSWMAVYQRNCAEACEHFGVGGMEREKNGGQPRATGGRLKKFVSSPGFPMVLGGLLTFCVLGGRFSSLAPSNLSMPGAHSRLEASLPATFEYANDVERGILNHLGSIFGCHSCGAKKKVGQFIADHQPPLKIATGRANGFFGKVAKYTVGLFD-KQWETGLVGGVLGVRQRFFPQCTSCSKLQSVAVRKGRRVLVTHLT--SLRSFHGSGALVPL 319
BLAST of mRNA_H-canaliculatus_F_contig1370.2968.1 vs. uniprot
Match: D0NUV7_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NUV7_PHYIT) HSP 1 Score: 122 bits (305), Expect = 1.530e-26 Identity = 66/144 (45.83%), Postives = 85/144 (59.03%), Query Frame = 2
Query: 590 SFGLVLYRALGGRFSSVAPSALHMPGAFSRLSASLPATLEYASDAKRQALAALGKNFGCHTCGTKAPATFIADHMPPLKTVKLANAKLWRKALRRTVAQRFYPQCQSCSTLQSAAVRSGTTTFKYHVTLAALRPYHATGALLVL 1021
+ GL+ ++ LGGR SS+APS GAF ASLPAT+EYA+ +R + G+ FGCHTCG K + ADHMPP K + +L R+ L R RFYPQC+ CS Q V+ +T K H L + R YHATG L+L
Sbjct: 146 AMGLLCFKLLGGRMSSLAPSPFANLGAFHLKKASLPATIEYATSVERGIIREFGRLFGCHTCGVKRGVRYHADHMPPKLVAKHTDEQLVRRLLGRKTTFRFYPQCEPCSNQQGTVVKQWKSTLKLH--LVSFRAYHATGMWLIL 287
BLAST of mRNA_H-canaliculatus_F_contig1370.2968.1 vs. uniprot
Match: A0A1V9ZFP2_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZFP2_9STRA) HSP 1 Score: 115 bits (289), Expect = 2.310e-24 Identity = 90/255 (35.29%), Postives = 127/255 (49.80%), Query Frame = 2
Query: 308 AVGGGVAFVAVLAFSQALQGFALRVSCSTPLGLPTALGFTTVAVASATSIRVAEGMSSGLQASSRRGSQDGSDSWRSLRHVAERPVTSGEI---GAGSFGLVLYRALGGRFSSVAPSALHMPGAFSRLSASLPATLEYASDAKRQALAALGKNFGCHTCGTKAPATFIADHMPPLKTVKLANAKLWRKALRRTVAQ--------------RFYPQCQSCSTLQSAAVRSGTTTFKYHVTLAALRPYHATGALLVL 1021
AVGGGV F ++ +Q + + LR+S + P+ LPT LG ++ VAS+ S+ V + + + P+ + A + GL+L+R LGGRF S+APS PGAF+ SLPAT+EYA R + + G+ +GCHTCGTK + + ADHMPP+ K N +L K R+YPQC++CS Q A V+ K HVT +R YH TG +VL
Sbjct: 36 AVGGGVLFFTGISITQVIL-YGLRISVAMPV-LPTLLG--SIGVASS-SVLVG------------------------VFCLRQHPMELEPLQLTAAATSGLLLFRLLGGRFRSLAPSDFRHPGAFAYAKRSLPATIEYADVNARAVIQSFGRLYGCHTCGTKT-SKYHADHMPPVLVAKAENTRLLAKIFGHLTQNGRLNLQDFFIHVHCRYYPQCEACSNTQGALVKKNAKQLKLHVT--QIRSYHFTGFWMVL 258
BLAST of mRNA_H-canaliculatus_F_contig1370.2968.1 vs. uniprot
Match: A0A024GBR4_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GBR4_9STRA) HSP 1 Score: 112 bits (279), Expect = 2.470e-23 Identity = 88/256 (34.38%), Postives = 130/256 (50.78%), Query Frame = 2
Query: 302 SQAVGGGVAFVAVLAFSQALQGFALRVSCSTPLGLPTALGFTTVAVASATSIRVAEGMSSGLQASSRRGSQDGSDSWRSLRHVAERPVTSGEIGAGS-----------FGLVLYRALGGRFSSVAPSALHMPGAFSRLSASLPATLEYASDAKRQALAALGKNFGCHTCGTKAPATFIADHMPPLKTVKLANAKLWRKALRRTVAQRFYPQCQSCSTLQSAAVR-SGTTTFKYHVTLAA----LRPYHATGALLVL 1021
S A GG+ F + L+ +Q +Q LRVS +TP+ LP +G ++A S S+ A + L + + SD W+ + + E + + G +++R LGGR ++APS GAF R +S AT YA D R + + G+ GCHTCG++ + + ADHMPP + K NA L + L RTV QR+YPQCQ+CS +Q V+ +G+ + L + R YH TG LVL
Sbjct: 45 SDACAGGIIFWSGLSLAQVMQK-CLRVSSATPI-LPQVIGCISIACLSTASVWYAA-LPRKLLLDYNKST---SDQWKKITTLYEYMTAFYHMRMQTTSLSMHPIYCLMGFIIFRVLGGRMLAIAPSDYRFLGAFHRFESSASATQMYAGDKIRLMMQSFGRRTGCHTCGSRRHSLYHADHMPPNEFAKRDNAGLMNRWLGRTVRQRYYPQCQTCSNIQGPLVKQTGSNRWSRASKLQSHWKEFRAYHLTGFWLVL 294
BLAST of mRNA_H-canaliculatus_F_contig1370.2968.1 vs. uniprot
Match: A0A7S2R906_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R906_9STRA) HSP 1 Score: 106 bits (264), Expect = 8.010e-22 Identity = 82/228 (35.96%), Postives = 124/228 (54.39%), Query Frame = 2
Query: 311 VGGGVAFVAVLAFSQALQGFALRVSCSTPLGLPTALGFTTVAVASATSIRVAEGMSSGLQASSRRGSQDGSDSWRSLRHVAERPVTS----GEIGA-----------GSFGLVLYRALGGRFSSVAPSALHMPGAFSR-LSASLPATLEYASDAKRQALAALGKNFGCHTCGTK-APATFIADHMPPLKTVKLANAKLWRKALRRTVAQRFYPQCQSCSTLQSAAVRS 943
V GV+F+ + QA Q LRV+ ++PL L ++ T+ ATS V+ ++ G+ +++ + S+ + H V S G +GA G++L+ +LGG +S +PS GAF+R SL ATL YA++ +R + ALG+ GCH+CG + +FIADH PP+K K N LWR+ V+QRFYPQCQ+CS++QS VR+
Sbjct: 30 VAAGVSFLGAVNIGQAAQA-TLRVNTASPL-LASSCSLVTLLAGLATSTYVSSELA-GVNTRAQQAFRGVGKSFAAAVHSTGLSVPSFRGMGSLGAIWDSHHQTIVASLCGVLLFYSLGGAPTSFSPSDARHLGAFARPKQGSLGATLSYATEKERSLINALGRKLGCHSCGKQHRVGSFIADHQPPVKFTKARNTALWRRITGLKVSQRFYPQCQACSSIQSRVVRA 254
BLAST of mRNA_H-canaliculatus_F_contig1370.2968.1 vs. uniprot
Match: A0A7S0G3Q1_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G3Q1_9RHOD) HSP 1 Score: 95.9 bits (237), Expect = 2.150e-19 Identity = 62/147 (42.18%), Postives = 79/147 (53.74%), Query Frame = 2
Query: 620 GGRFSSVAPSALHMPGAFSRLSASLPATLEYASDAKRQALAALGKNFGCHTCGTKAPATFIADHMPPLKTVKLANAKLWRKAL--RRTVAQRFYPQCQSCSTLQSAAVRSGTTTFKYHVTLAALRPYHATGALLVLGNLLLVGQQMQ 1054
GGR S PS + PGAF R S+P + +YAS A ++ + G FGCHTCG + F ADHMPP K V A W + R V R YPQCQ CS++QSAA+ + YH + RPYH TG L L + QQ++
Sbjct: 4 GGRLRSFLPSNVLKPGAFHRRIGSIPGSSQYASKAGKELIQEHGAAFGCHTCGN-VRSQFWADHMPP-KAVVAARRNGWARKFFEYRRVNYRLYPQCQPCSSIQSAAILRKSRKLIYHYLVR--RPYHLTGLSNGLVQSLFLRQQLE 146
BLAST of mRNA_H-canaliculatus_F_contig1370.2968.1 vs. uniprot
Match: UPI0014551555 (uncharacterized protein LOC117300784 n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014551555) HSP 1 Score: 95.1 bits (235), Expect = 9.030e-18 Identity = 65/158 (41.14%), Postives = 89/158 (56.33%), Query Frame = 2
Query: 587 GSFGLVLYRALGGRFSSVAPSALHMPGAFSRLSASLPATLEYASDAKRQALAALGKNFGCHTCGTKAPAT--FIADHMPPLKTVK--LANAKLWRKAL--RRTVAQRFYPQCQSCSTLQS----AAVRSGTTTFKY-HVTL--AALRPYHATGALLVL 1021
G+ ++++ LGGRFSSV PS L PGAF+R L A+ YAS+ ++++L +GK +GCHTCG + T FIADH PPL ++ + K W + RR +FYPQC +CS Q A R G +K+ H+ ALR YH L VL
Sbjct: 119 GATSSLIFKCLGGRFSSVLPSNLLHPGAFAR--EGLSASFNYASNKQKRSLRMVGKKYGCHTCGRRRLKTKDFIADHQPPLAVIRERMMTRKTWYDVIFRRRLRELKFYPQCNTCSDTQGMHLRTAYRPGFRVWKWRHIVTHSTALRLYHLYLPLPVL 274 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1370.2968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 19
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1370.2968.1 >prot_H-canaliculatus_F_contig1370.2968.1 ID=prot_H-canaliculatus_F_contig1370.2968.1|Name=mRNA_H-canaliculatus_F_contig1370.2968.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=298bp MHQELDAMGRRLKRAGVEWKGRRRDVHQDIASLFGGVSQAVGGGVAFVAVback to top mRNA from alignment at H-canaliculatus_F_contig1370:18197..27034- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1370.2968.1 ID=mRNA_H-canaliculatus_F_contig1370.2968.1|Name=mRNA_H-canaliculatus_F_contig1370.2968.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=8838bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1370:18197..27034- (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1370:18197..27034- >mRNA_H-canaliculatus_F_contig1370.2968.1 ID=mRNA_H-canaliculatus_F_contig1370.2968.1|Name=mRNA_H-canaliculatus_F_contig1370.2968.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1788bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1370:18197..27034- (Hapterophycus canaliculatus Oshoro5f female)back to top |