mRNA_H-canaliculatus_F_contig137.2966.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig137.2966.1
Unique NamemRNA_H-canaliculatus_F_contig137.2966.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig137.2966.1 vs. uniprot
Match: D7FT81_ECTSI (RPOL4c domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT81_ECTSI)

HSP 1 Score: 256 bits (655), Expect = 6.270e-81
Identity = 128/151 (84.77%), Postives = 144/151 (95.36%), Query Frame = 3 
Query:   75 MEGVDDEENANLLQFGPDH-KEEMSCLSNAEVAIILEKQRVTYEEKDINVTPAFSKTMSYVKRFGGQGGNAQVTSTSEMRETLQQFEAFHEGESVRLHQFEIMQVANLMQSDSEVEEILALIPSLGHRLSEEDLENILAIVRKHQHSRLYS 524
            MEGVDDEENANLLQFGP+H K++MSCLSNAEV+++LEKQR+ YEEKDINVTPAFSKTMSYVKRFGG GG+ ++T+TSE+RE LQQFE FHEGES+RLHQFEIMQVANLMQ+DSEVEE+LALIPSLG RL+EEDLENILAIVRKHQHSRLYS
Sbjct:    1 MEGVDDEENANLLQFGPEHAKDDMSCLSNAEVSVVLEKQRINYEEKDINVTPAFSKTMSYVKRFGGLGGSVKMTATSELREALQQFETFHEGESIRLHQFEIMQVANLMQADSEVEEVLALIPSLGARLTEEDLENILAIVRKHQHSRLYS 151
[Close]
BLAST of mRNA_H-canaliculatus_F_contig137.2966.1 vs. uniprot
Match: H3GHD4_PHYRM (RPOL4c domain-containing protein n=23 Tax=Oomycota TaxID=4762 RepID=H3GHD4_PHYRM)

HSP 1 Score: 100 bits (249), Expect = 2.190e-21
Identity = 69/153 (45.10%), Postives = 95/153 (62.09%), Query Frame = 3 
Query:   57 SQPGHTMEGVDDEENANLLQFGPDHKEEMSCLSNAEVAIILEKQRVTYEEKDINVTPAFSKTMSYVKRFGG-QGGNAQVTSTSEMRETLQQ--FEAFHEGESV--RLHQFEIMQVANLMQSDSEVEEILALIPSLGHRLSEEDLENILAIVRK 500
            + P H +    D E+A  L  G D + E +CLSNAEVA+ILEKQ+  YE ++  +T  F KT SYV+RF G +   A   S +E+RE L    F+   EGE+V  RL +FEI  ++NL  +  EVEE +ALIPSL  R +E+++E IL IV +
Sbjct:    3 ANPQHVV----DTEDAAELNLGDDFRNE-TCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYVQRFSGTKDPVANQASVTELREALMSLAFQREEEGETVEYRLEEFEIACLSNL--NPEEVEEAVALIPSLHKRFAEDEIEEILGIVSR 148
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BLAST of mRNA_H-canaliculatus_F_contig137.2966.1 vs. uniprot
Match: A0A3M6VV57_9STRA (RPOL4c domain-containing protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VV57_9STRA)

HSP 1 Score: 100 bits (248), Expect = 3.020e-21
Identity = 69/153 (45.10%), Postives = 95/153 (62.09%), Query Frame = 3 
Query:   57 SQPGHTMEGVDDEENANLLQFGPDHKEEMSCLSNAEVAIILEKQRVTYEEKDINVTPAFSKTMSYVKRFGG-QGGNAQVTSTSEMRETLQQ--FEAFHEGESV--RLHQFEIMQVANLMQSDSEVEEILALIPSLGHRLSEEDLENILAIVRK 500
            S P H +    D E+A  L  G D + E +CLSNAEVA+ILEKQ+  YE ++  +T  F KT SYV+RF G +   A   S +E+RE L    F+   +GE+V  RL +FEI  ++NL  +  EVEE +ALIPSL  R +E+++E IL IV +
Sbjct:    3 SNPQHVV----DTEDAAELNLGGDFRNE-TCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYVQRFSGTKDPVANQASVTELREALMSLAFQREEDGETVEYRLEEFEIACLSNL--NPEEVEEAVALIPSLQKRFAEDEIEEILGIVSR 148
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BLAST of mRNA_H-canaliculatus_F_contig137.2966.1 vs. uniprot
Match: A0A8K1FR52_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FR52_PYTOL)

HSP 1 Score: 97.4 bits (241), Expect = 2.800e-20
Identity = 66/153 (43.14%), Postives = 94/153 (61.44%), Query Frame = 3 
Query:   57 SQPGHTMEGVDDEENANLLQFGPDHKEEMSCLSNAEVAIILEKQRVTYEEKDINVTPAFSKTMSYVKRFGG-QGGNAQVTSTSEMRETLQQ--FEAFHEGE--SVRLHQFEIMQVANLMQSDSEVEEILALIPSLGHRLSEEDLENILAIVRK 500
            S P H +    D E+A  L  G D + E +CLSNAEVA+ILEKQ+  YE ++  +T  F KT SYV+RF G +   +   S +E+RE L    F+   +G+   VRL +FEI  ++NL  +  EVEE +AL+PSL  R +E+++E IL IV +
Sbjct:    3 SNPQHVI----DTEDAAELNLGDDFRHE-TCLSNAEVAVILEKQKSDYENQEKQLTGVFQKTYSYVQRFSGTKDPVSNQASVTELREALMSLAFQREEDGQVTEVRLEEFEIACLSNL--NPEEVEESVALVPSLQKRFAEDEIEEILGIVSR 148
[Close]
BLAST of mRNA_H-canaliculatus_F_contig137.2966.1 vs. uniprot
Match: F0W0U0_9STRA (Uncharacterized protein AlNc14C5G725 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W0U0_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 9.950e-20
Identity = 65/151 (43.05%), Postives = 94/151 (62.25%), Query Frame = 3 
Query:   84 VDDEENANLLQFGPDHKEEMSCLSNAEVAIILEKQRVTYEEKDINVTPAFSKTMSYVKRFGG-QGGNAQVTSTSEMRETLQQFEAFHEGES----VRLHQFEIMQVANLMQSDSEVEEILALIPSLGHRLSEEDLENILAIVRKHQHSRLY 521
            V D E+A  L  G D ++E +CLSNAEVA+ILEKQ+  YE ++  +T  F KT SYV+RF G +   +   S +E+RE L       E +     +RL +FEI  ++NL  +  EVEE ++LIPSL  R +EE++E IL IV + + +R+Y
Sbjct:    8 VVDTEDAAELNLGEDFRDE-TCLSNAEVAVILEKQKQDYENQEKQLTNVFQKTYSYVQRFSGTKDPVSNQASVTELREALMSLVFNREIDERVVEIRLEEFEISCLSNL--NPEEVEEAVSLIPSLSKRYAEEEIEEILGIVSR-KAARMY 154
[Close]
BLAST of mRNA_H-canaliculatus_F_contig137.2966.1 vs. uniprot
Match: A0A024TL56_9STRA (RPOL4c domain-containing protein n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024TL56_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.600e-19
Identity = 65/153 (42.48%), Postives = 92/153 (60.13%), Query Frame = 3 
Query:   90 DEENANLLQFGPDHKEEMSCLSNAEVAIILEKQRVTYEEKDINVTPAFSKTMSYVKRFGG-QGGNAQVTSTSEMRETLQQFEAFHEGES-------VRLHQFEIMQVANLMQSDSEVEEILALIPSLGHRLSEEDLENILAIVRKHQHSRLYS 524
            D E+A  L  G D ++E +CLSNAEVA+ILEKQ+  YE  +  +T  F KT SYV+RF G +   A   S +E+RE L  +E   E          VRL +FEI  ++NL  +  E EE +ALIPSL  + +EED++ IL I+ +   +R+Y+
Sbjct:   13 DTEDAAELNLGEDFQQE-TCLSNAEVAVILEKQKSDYESSEKPLTSVFQKTYSYVQRFSGTKDPVANQASVTELREALITYEFTRESPDDPSQAIEVRLEEFEIACLSNL--NPEEPEEAMALIPSLNKKFTEEDIDEILQIIARTT-ARMYA 161
[Close]
BLAST of mRNA_H-canaliculatus_F_contig137.2966.1 vs. uniprot
Match: A0A3F2S3S1_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S3S1_9STRA)

HSP 1 Score: 100 bits (248), Expect = 2.660e-19
Identity = 71/159 (44.65%), Postives = 95/159 (59.75%), Query Frame = 3 
Query:   57 SQPGHTMEGVDDEENANLLQFGPDHKEEMSCLSNAEVAIILEKQRVTYEEKDINVTPAFSKTMSYVKRFGG-QGGNAQVTSTSEMRETLQQ--FEAFHEGESV--RLHQFEIMQVANLMQSDSEVEEILALIPSLGHRLSEEDLENILAIVRKHQHSRL 518
            + P H +    D E+A  L  G D + E +CLSNAEVA+ILEKQ+  YE ++  +T  F KT SYV+RF G +   A   S +E+RE L    F+   EGE V  RL +FEI  ++NL  +  EVEE +ALIPSL  R +E+++E IL IV   Q   L
Sbjct:    3 ANPQHVV----DTEDAAELNLGDDFRNE-TCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYVQRFSGTKDPVANQASVTELREALMSLAFQREEEGEKVEYRLEEFEIACLSNL--NPEEVEEAVALIPSLHKRFAEDEIEEILGIVSPVQAQTL 154
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BLAST of mRNA_H-canaliculatus_F_contig137.2966.1 vs. uniprot
Match: A0A067CZ22_SAPPC (RPOL4c domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CZ22_SAPPC)

HSP 1 Score: 92.0 bits (227), Expect = 2.600e-18
Identity = 62/147 (42.18%), Postives = 90/147 (61.22%), Query Frame = 3 
Query:   84 VDDEENANLLQFGPDHKEEMSCLSNAEVAIILEKQRVTYEEKDINVTPAFSKTMSYVKRFGG-QGGNAQVTSTSEMRETLQQFEAFHEGES-------VRLHQFEIMQVANLMQSDSEVEEILALIPSLGHRLSEEDLENILAIVRK 500
            +D E+ A L+  G D + E +CLSNAEVA+ILEKQ+  YE ++  +T  F KT SYV+RF G +   +   S +E+RE L  +E   E          +RL +FEI  ++NL  +  E EE +ALIPSL  R +E+D+E IL+I+ +
Sbjct:   10 IDTEDAAELI-LGEDFQGE-TCLSNAEVAVILEKQKSDYESQEKTLTNVFQKTYSYVQRFSGTKDPVSNQASVTELREALITYEFSREHPDDPSQTVEIRLEEFEIACLSNL--NPEEPEEAMALIPSLQKRFTEDDIEEILSIIAR 152
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BLAST of mRNA_H-canaliculatus_F_contig137.2966.1 vs. uniprot
Match: A0A6A3KCE9_9STRA (RPOL4c domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KCE9_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 7.460e-18
Identity = 61/143 (42.66%), Postives = 82/143 (57.34%), Query Frame = 3 
Query:   75 MEGVDDEENANLLQFGPDHKEEMSCLSNAEVAIILEKQRVTYEEKDINVTPAFSKTMSYVKRFGG-QGGNAQVTSTSEMRETLQQFEAFHEGESVRLHQFEIMQVANLMQSDSEVEEILALIPSLGHRLSEEDLENILAIVRK 500
            ME  D    A  L  G D ++E+ CLSNAEVAIILEKQ++ Y E+    T AF KT SYV RF G +       S  E+RE LQ     H+ E  RL +FEI  ++NL    +E  E +ALIPSL    ++ ++E IL ++ +
Sbjct:    9 MESTD----AAALNIGEDFEDEV-CLSNAEVAIILEKQKINYVEQKKTFTRAFKKTESYVLRFTGTRDPLVNQASVIELREALQSISFEHDDEVHRLEEFEIACLSNLNPEGAE--EAVALIPSLSKHFTDNEIEEILGMISR 144
[Close]
BLAST of mRNA_H-canaliculatus_F_contig137.2966.1 vs. uniprot
Match: A0A2D4BKN8_PYTIN (DEAD/DEAH box RNA helicase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKN8_PYTIN)

HSP 1 Score: 96.7 bits (239), Expect = 1.830e-17
Identity = 66/144 (45.83%), Postives = 90/144 (62.50%), Query Frame = 3 
Query:   84 VDDEENANLLQFGPDHKEEMSCLSNAEVAIILEKQRVTYEEKDINVTPAFSKTMSYVKRFGG-QGGNAQVTSTSEMRETLQQ--FEAFHEGES--VRLHQFEIMQVANLMQSDSEVEEILALIPSLGHRLSEEDLENILAIVRK 500
            V D E+A  L  G D + E +CLSNAEVA+ILEKQ+  YE ++  +T  F KT SYV+RF G +   A   S +E+RE L    F    +G+   VRL +FEI  ++NL  +  EVEE +ALIPSL  R +E+++E IL IV +
Sbjct:  405 VVDTEDAAELNLGDDFRHE-TCLSNAEVAVILEKQKSDYETQEKQLTGVFQKTYSYVQRFSGTKDPVANQASVTELREALMSLAFPREEDGQKTEVRLEEFEIACLSNL--NPEEVEEAVALIPSLQKRFAEDEIEEILGIVSR 545
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig137.2966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D7FT81_ECTSI6.270e-8184.77RPOL4c domain-containing protein n=2 Tax=Ectocarpu... [more]
H3GHD4_PHYRM2.190e-2145.10RPOL4c domain-containing protein n=23 Tax=Oomycota... [more]
A0A3M6VV57_9STRA3.020e-2145.10RPOL4c domain-containing protein n=3 Tax=Peronospo... [more]
A0A8K1FR52_PYTOL2.800e-2043.14Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
F0W0U0_9STRA9.950e-2043.05Uncharacterized protein AlNc14C5G725 n=1 Tax=Albug... [more]
A0A024TL56_9STRA1.600e-1942.48RPOL4c domain-containing protein n=7 Tax=Aphanomyc... [more]
A0A3F2S3S1_9STRA2.660e-1944.65Helicase C-terminal domain-containing protein n=1 ... [more]
A0A067CZ22_SAPPC2.600e-1842.18RPOL4c domain-containing protein n=4 Tax=Saprolegn... [more]
A0A6A3KCE9_9STRA7.460e-1842.66RPOL4c domain-containing protein n=4 Tax=Phytophth... [more]
A0A2D4BKN8_PYTIN1.830e-1745.83DEAD/DEAH box RNA helicase, putative n=1 Tax=Pythi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig137contigH-canaliculatus_F_contig137:54803..58632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score255.8
Seed ortholog evalue1.3e-65
Seed eggNOG ortholog2880.D7FT81
Preferred namePOLR2D
KEGG rclassRC02795
KEGG koko:K03012,ko:K11314
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169
KEGG ModuleM00180
GOsGO:0000288,GO:0000375,GO:0000377,GO:0000398,GO:0000428,GO:0000932,GO:0000956,GO:0003674,GO:0003824,GO:0003899,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005694,GO:0005700,GO:0005705,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006351,GO:0006352,GO:0006354,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006446,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008104,GO:0008150,GO:0008152,GO:0008380,GO:0008543,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009266,GO:0009301,GO:0009408,GO:0009452,GO:0009628,GO:0009719,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016073,GO:0016591,GO:0016604,GO:0016607,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0023052,GO:0030880,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031369,GO:0031503,GO:0031974,GO:0031981,GO:0031990,GO:0032268,GO:0032270,GO:0032774,GO:0032991,GO:0033036,GO:0033554,GO:0034062,GO:0034248,GO:0034250,GO:0034402,GO:0034605,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0035770,GO:0036260,GO:0036464,GO:0042221,GO:0042795,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0045727,GO:0045948,GO:0046483,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051247,GO:0051641,GO:0051649,GO:0051716,GO:0055029,GO:0060147,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0061695,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070848,GO:0070887,GO:0071166,GO:0071310,GO:0071363,GO:0071426,GO:0071427,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071774,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:0097747,GO:0098687,GO:0098781,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576,GO:1902494,GO:1990234,GO:1990904,GO:2000112
EggNOG free text desc.recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex
EggNOG OGsCOG5250@1,KOG2351@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko03021,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA polymerase II, Rpb4
Ec32 orthologEc-06_003770.1
Exons5
Model size1438
Cds size453
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929111.143558-UTR-H-canaliculatus_F_contig137:54802..548341622929111.143558-UTR-H-canaliculatus_F_contig137:54802..54834Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig137 54803..54834 +
1696845682.9418004-UTR-H-canaliculatus_F_contig137:54802..548341696845682.9418004-UTR-H-canaliculatus_F_contig137:54802..54834Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig137 54803..54834 +
1622929111.1610866-UTR-H-canaliculatus_F_contig137:54959..550011622929111.1610866-UTR-H-canaliculatus_F_contig137:54959..55001Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig137 54960..55001 +
1696845682.9550707-UTR-H-canaliculatus_F_contig137:54959..550011696845682.9550707-UTR-H-canaliculatus_F_contig137:54959..55001Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig137 54960..55001 +
1622929111.314447-UTR-H-canaliculatus_F_contig137:57721..586321622929111.314447-UTR-H-canaliculatus_F_contig137:57721..58632Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig137 57722..58632 +
1696845683.009386-UTR-H-canaliculatus_F_contig137:57721..586321696845683.009386-UTR-H-canaliculatus_F_contig137:57721..58632Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig137 57722..58632 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929111.1980736-CDS-H-canaliculatus_F_contig137:55001..551531622929111.1980736-CDS-H-canaliculatus_F_contig137:55001..55153Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig137 55002..55153 +
1696845682.965843-CDS-H-canaliculatus_F_contig137:55001..551531696845682.965843-CDS-H-canaliculatus_F_contig137:55001..55153Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig137 55002..55153 +
1622929111.2182884-CDS-H-canaliculatus_F_contig137:55612..556991622929111.2182884-CDS-H-canaliculatus_F_contig137:55612..55699Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig137 55613..55699 +
1696845682.9746408-CDS-H-canaliculatus_F_contig137:55612..556991696845682.9746408-CDS-H-canaliculatus_F_contig137:55612..55699Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig137 55613..55699 +
1622929111.2361712-CDS-H-canaliculatus_F_contig137:56915..570241622929111.2361712-CDS-H-canaliculatus_F_contig137:56915..57024Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig137 56916..57024 +
1696845682.9838996-CDS-H-canaliculatus_F_contig137:56915..570241696845682.9838996-CDS-H-canaliculatus_F_contig137:56915..57024Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig137 56916..57024 +
1622929111.2655935-CDS-H-canaliculatus_F_contig137:57616..577211622929111.2655935-CDS-H-canaliculatus_F_contig137:57616..57721Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig137 57617..57721 +
1696845682.997713-CDS-H-canaliculatus_F_contig137:57616..577211696845682.997713-CDS-H-canaliculatus_F_contig137:57616..57721Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig137 57617..57721 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig137.2966.1prot_H-canaliculatus_F_contig137.2966.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig137 55002..57721 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig137.2966.1

>prot_H-canaliculatus_F_contig137.2966.1 ID=prot_H-canaliculatus_F_contig137.2966.1|Name=mRNA_H-canaliculatus_F_contig137.2966.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=151bp
MEGVDDEENANLLQFGPDHKEEMSCLSNAEVAIILEKQRVTYEEKDINVT
PAFSKTMSYVKRFGGQGGNAQVTSTSEMRETLQQFEAFHEGESVRLHQFE
IMQVANLMQSDSEVEEILALIPSLGHRLSEEDLENILAIVRKHQHSRLYS
*
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mRNA from alignment at H-canaliculatus_F_contig137:54803..58632+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig137.2966.1 ID=mRNA_H-canaliculatus_F_contig137.2966.1|Name=mRNA_H-canaliculatus_F_contig137.2966.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=3830bp|location=Sequence derived from alignment at H-canaliculatus_F_contig137:54803..58632+ (Hapterophycus canaliculatus Oshoro5f female)
CTACACCGTTAGCACGGAGGACCAACTGCAAGGTGTGTCCTATACGCCCA
CTTTTCCTTTTTTGACCGTGCATCTGAGATGATGTCACCCTCTGAATAGA
TCGGAAGTGGTGAACTAAGAAACGAGGTGTGTCTCTCTATGTTATGTTTC
CCAGCAGCACGCGGCATCGGCGGCGGATTTATCACAACCTGGACACACGA
TGGAAGGGGTCGACGACGAGGAAAACGCCAACCTTCTCCAGTTCGGACCG
GATCATAAAGAAGAGATGTCGTGCCTGTCCAACGCGGAGGTGGCGATCAT
TCTGGAAAAGCAGAGGGTCACCTACGAAGAGAAGGACATCAATGTGACGC
CGTGAGTCCGCTGCTGTTGTAGGCACAAGAGCGGTTGCCCAGATCTTTCG
TGTTGACGTCGAGCCGTTGAGCTTCGTTGTCGAACCCAGGGCAGGAGCAC
CAGCATCGTGCGTGAAGACATCTGATTTCTGCTTTACAAGGGTGGTGGGT
GGTGGGAAGAAGACTGAGCCAGCTTAAGCGTTGCGGCATGGACTTCGCGA
AGAGACCACATCCGTGTTGGCAAATTCGCGGTCACAGACAACCGCCGTAG
GGATGTCATGAATCGAGACAACTTGCTCGCGCTAGGAGGGCAGCAAGGAT
GATGATTCTGCAGGAACGGTGTAACCATGCAAGGTTTCTTGAGCTAATCG
CCGGGCTTGACTTTCTGTGTCCTGGCTCGTACGGAGCAAGCGATGGTAAT
CTTGTTTTTTGTCGCGACCTACTGCTGCCGTTGCTGCTTTCCCTACCTCG
TTTGAACCAGGGCTTTCTCCAAGACCATGTCATACGTGAAGCGCTTCGGA
GGGCAAGGAGGGAACGCCCAAGTCACGTCAACTTCGGAGATGCGAGAGTG
AGAATCAAAACGTCGACGGCCGCAGGGAACATCCCCCGATCTGTGACCCG
CAGCAGGCGTTCGTCCCCCCGCCTTAGCCCACTACGAGCAAACTGCTCTT
TACGCGTAGAAATAGAAATTTGGATTTCAAGTGATCCCTGGTACAGAAAG
TAGGTCGAATTGGGTAGATCCCGCTTTCGCTTACCCTGCTCTTTTTGTCC
AACGCGCGTAAGCACATCGCGAAGAAAGGAAGGGACAACAGCTTTTTTTT
TCTTCCAGAGAGACTCTTGTCGTCCCCAATAATTTCTCCTCCGATAATCT
TTCATCAGGCTTGGTCGTCACACGTACGCACCGTCCACACGCCGGCTTTG
TGCAGTGTTGACCCACAGTATATTTGCAGGCGTTTGCCGGTGGTATTTAG
GTGCGGACCTGCCGTGATGCGATACGCCATTGCTGCCGAGCTTGCGTGTG
TCTTTGTTATGATGAATCGAACGCCAGATCGCTGCCGATTGAGTCGTCCG
GCAGCTCTCTTGTTGAGCGTTGGTGTACGTATGTAGAGCACAAACGAGCT
TGCGACTAACACCACTTTATTTCGAAACAGACTTCGTTGGCGCAGGCAGT
GTGTTTGTTCTGCCTGCGATACACTTGTCACTGCAGGCTTCCTGCAGGTT
GTTTGGGCGGGGCTGTTTCCCGGCACTGTCGAACGGATTTGATTCTCACG
ATTGGCAATCCTGGCGTTGGAATTTCTGTTCTCGGCAGGGGAATCTTGTT
TTGTTCCGTGAGCCTGTTTTAGTCCGGTACCGACGGTCCATGATCATGCA
CAGCAAGCGTTTTGAAGACGTTTTGAAGTCCATGGGGGGGAGTGAGAAGT
AAAGCACAGACGAAAACGCCTCTTCAGTCAGCATTCCTGTTGGCTGTTTT
TGATGTAACCAGCACCATCGGTAGTGGCTTCTGGATGAACCCGTCGACTA
GGGCTGGGTCGGTCGTACATTGCGTAGGAGGACAGGCAACACCGCCAGAA
CCGCTTTTCGCGGATCCCACCCAAGACGGCGAAGATTTTGATTTCTAGCA
AGGGCACGTGCGTAGCGACTGCTGCTGTAGACTCCCTGTGCTGAGGTTGG
TCGCAAACAGCGGGTGCATCCCGGAACACACGTCCGTCGCTCACCCTCCA
TCCTGGCCAATGCGCTCGCCCGCCCGTCCGCCCGCCCGCCTGCTGCCTGC
CCGCCTGTCTCAGAACACTCCAGCAGTTCGAGGCGTTTCATGAGGGAGAG
TCCGTCCGACTGCACCAGTTCGAGATCATGCAGGTGGCCAACCTGATGCA
GTCAGACAGCGAGGTGGAAGAGGTGCGCCCGTTGCTTTTATTTCATGGTC
ACTCTCTCCGTTGTGGATGCTTGTAAACTTACATGTTGAGCTTTTCGTTT
TGCATGCTCAACCTCGCCGGGTGATGTATGTATATATTTGTTTTCTGCTC
GGCTTCCTCGATGGGAGGCGTACCGTAGTAGCAACTCGTGTCGGTGGGAT
GCTATAGCATAGCTCGGGGCGGATCTTGGATACCCCACCCCCGCGACTTC
CTGCCTACACGAGATCACTGTTCGCATCTCTCCTTTAGAGCCAAAGGTGC
CAATCTCTGCTCGTGCACGACATCACGGTATTTCCCCCGCACATCTACTT
GATAAAAATTCATCATGGATGTTCGTGCGTGCTCATGATCCCGTTCGCCA
GTGATTTCACACCGCTTCTTGCCTCCAAAATAATCGTTTCAAGTTCGCCT
CTTGTTTCGGGGGCACAAATTTACGGCTGCTTCTCGTTTGACCTAAAAAG
TTGTTGAGTACCTCTATTTTTGGTCCACCCACACCCACACCCTCCCCCCT
TCCATCTCCGCCCTCCGTGACCCCCCTCTCGATTTGCGCATTTTGGCCCG
ACGCATGAACGCAGATTCTGGCGCTGATCCCCAGCTTGGGCCACAGACTC
TCGGAGGAAGACTTGGAAAACATCCTCGCTATCGTTCGAAAGCACCAGCA
CTCCCGCTTGTATTCCTAGGTCATCACGGGTTGTAGGAAGCGGGGTGGTC
GTCCCTCTTTTTTGTCTTTTCATTTCGGCTGCCGTCCTCATGCTCGCTTG
GGTTTGGGAGCATGGCGGGGGGGAGGCAGGGGCGGCTCTGCGGCGCGGGC
AGCAGCACTACTCTGCAAGCGGTGCTCTATGTTTTCGTCTCTTCGTCGAT
GGTGCGCTCATCATTGCGTCTTCCGTCCAGGAAACGCAGGGAGAAGCAGC
CTCCTTCCCGCACAGCGGGGCAAGAGAAATCTTTTCGGCCAGCCCATCTG
GTCTTGTTTACTTAAGTTGGGCGATCCGTGGCTTCTTTGCCTTGTATCTG
ATCACGTTGCACGGAGAGAGAGAGAGAGAGAGAGATCGTAGCGTGCCATC
TCCATGCAAGAGTATTTGCTCCTTTAGCGAACTTTTCTTGAGCGTTTTTT
TGGCCTGAGTTTATCGTCCCTTCCCGACACAGAACCCCCGTGTTCTGTCT
CGCACGAAGGGGGGTTACACACCCACGTCAAGAAACCGCCCAACAAAGGT
CCGTTAGATGAACCGGTCCTCCGGCGTGTTGCTATGGGCGACGAAGTCGT
AAAGCGAGAAAGGCTTCGCCATTTCACATGTACTAACACCCCACCTAGGT
TGCTCCGGGTAGCGCTCGAGGATTCTTGGGCCCTCTCCGTCGTCGCATAT
CTTTGACCTGCCGTCCTTTTGCTTCGTTTCCCTCCCGCCGGGCTTGCGGG
ACCAACATCAACGAACAAGCTACTCTCAACAGAGCCACTAACGGCGCGTC
TCTGGTGTTGATTCCATTCCGGCGGTCGCTCTCGGCCTTTGGTGGGTCAG
CGAGAGCAGTACAATGAAATGCGAGAGAATGAGCGTGCGTGACCCAGCCG
ATAACACAAATTATTATCCCTGTTGCGCGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig137:54803..58632+

>mRNA_H-canaliculatus_F_contig137.2966.1 ID=mRNA_H-canaliculatus_F_contig137.2966.1|Name=mRNA_H-canaliculatus_F_contig137.2966.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=906bp|location=Sequence derived from alignment at H-canaliculatus_F_contig137:54803..58632+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGAAGGGGTCGACGACGAGGAAAACGCCAACCTTCTCCAGTTCGGACC
GGATCATAAAGAAGAGATGTCGTGCCTGTCCAACGCGGAGGTGGCGATCA
TTCTGGAAAAGCAGAGGGTCACCTACGAAGAGAAGGACATCAATGTGACG
CCATGGAAGGGGTCGACGACGAGGAAAACGCCAACCTTCTCCAGTTCGGA
CCGGATCATAAAGAAGAGATGTCGTGCCTGTCCAACGCGGAGGTGGCGAT
CATTCTGGAAAAGCAGAGGGTCACCTACGAAGAGAAGGACATCAATGTGA
CGCCGGCTTTCTCCAAGACCATGTCATACGTGAAGCGCTTCGGAGGGCAA
GGAGGGAACGCCCAAGTCACGTCAACTTCGGAGATGCGAGAGGCTTTCTC
CAAGACCATGTCATACGTGAAGCGCTTCGGAGGGCAAGGAGGGAACGCCC
AAGTCACGTCAACTTCGGAGATGCGAGAAACACTCCAGCAGTTCGAGGCG
TTTCATGAGGGAGAGTCCGTCCGACTGCACCAGTTCGAGATCATGCAGGT
GGCCAACCTGATGCAGTCAGACAGCGAGGTGGAAGAGAACACTCCAGCAG
TTCGAGGCGTTTCATGAGGGAGAGTCCGTCCGACTGCACCAGTTCGAGAT
CATGCAGGTGGCCAACCTGATGCAGTCAGACAGCGAGGTGGAAGAGATTC
TGGCGCTGATCCCCAGCTTGGGCCACAGACTCTCGGAGGAAGACTTGGAA
AACATCCTCGCTATCGTTCGAAAGCACCAGCACTCCCGCTTGTATTCCTA
GATTCTGGCGCTGATCCCCAGCTTGGGCCACAGACTCTCGGAGGAAGACT
TGGAAAACATCCTCGCTATCGTTCGAAAGCACCAGCACTCCCGCTTGTAT
TCCTAG
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