mRNA_H-canaliculatus_F_contig137.2963.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig137.2963.1
Unique NamemRNA_H-canaliculatus_F_contig137.2963.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig137.2963.1 vs. uniprot
Match: D7FT74_ECTSI (UBX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT74_ECTSI)

HSP 1 Score: 612 bits (1577), Expect = 2.010e-205
Identity = 376/527 (71.35%), Postives = 406/527 (77.04%), Query Frame = 1 
Query:   76 MVDFLNLDSRGSKLQKEQQKRRDAARLRLQRERRSKEAAARDQARIEEQIKAKKLEQXXXXXXXXXXXXXEQIRTAGIKYKESLLAVTADGEGDKILLPPSALESLSGQDAVGLGPMLFELTCTSCAPAPAPAGQXXXXSKKNAAPPAAIRTTHAGVLEFTADEGTVGLPRKVVLSLLGATAQQVPLPQNGEE-GAGEGSEKAPAKRRPVAGLESVVVRYVRLAKATFARVVPETVGLSQVSELRAMLENNMRNHATLTVGDHLSVWRRGKEFSLK-------------------VVELRPEPHVTVIDTDMEIELDLPEKAREQLEEKSAQDRAKTMRAHMGVATTTSSAGSSPGQSLSPTRRAASAGGGHVLGGEGAGVTGIGGTRAARSSLLPMDDSE-DDXXXIXSDEERSKSGG--KNAFDPVKHRLAKFQELPEEPPTDEEDVFTCQLRSPQGRFKRRFRFGDAIGVLLDFAEAQGGVPGQYRLVVPFPRRILTRDDGSTGTTLREAGLTSKQESVILEML 1587
            M DFLNLDSRG+KL+KEQQKRRDAARLR+QRERRSKEAAA+DQARI           XXXXXXXXXXXXX+QIRTAGI YKESLLAVTADGEGDKILLPPSALE LS QDAVGLGPMLFELTCT+   AP    Q               RTTHAGVLEF ADEGT+GLPRKVVLSLLGA A QVP   + E   A +  E A A+R  V GLE+VVVRYVRLAKATFARVVPETVGLSQVSELRAMLE+NMRNHATLTVGDHLSVWRRGKEFSLK                   VVELRPEP VTVIDTDMEIELDLPEKAREQL+EK AQDRAKT+RAHMG AT  SS GSSP QSLSP      +G G+ +GG+G+ V   GG   + + L PMDDSE DD   + SD+ERS  GG  K AFD  KHRLAKFQ+LPEEPP DEE VFTCQLR+ +G+F RRFRF DA+GVLLDF EAQGGVPGQYRLV+PFPRR+LTRDD S GTTL EAGLTSKQESVILE L
Sbjct:    1 MADFLNLDSRGNKLKKEQQKRRDAARLRIQRERRSKEAAAKDQARIXXXXXXXXXXXXXXXXXXXXXXXXDQIRTAGISYKESLLAVTADGEGDKILLPPSALECLSRQDAVGLGPMLFELTCTTSGAAPTSQQQPEKAPALQGGTITTTRTTHAGVLEFVADEGTIGLPRKVVLSLLGAAAHQVPSRTSDENISANDDPENAKAERPAVEGLENVVVRYVRLAKATFARVVPETVGLSQVSELRAMLEHNMRNHATLTVGDHLSVWRRGKEFSLKSEDSHSPLTPEREPPLTMQVVELRPEPQVTVIDTDMEIELDLPEKAREQLQEKGAQDRAKTLRAHMGAATI-SSRGSSPTQSLSPPP----SGRGYAVGGKGSSVA-AGGRDTSTTGLSPMDDSESDDDSDLDSDDERSTPGGPKKGAFDLEKHRLAKFQQLPEEPPRDEEGVFTCQLRTTEGKFTRRFRFADALGVLLDFCEAQGGVPGQYRLVMPFPRRVLTRDDASAGTTLHEAGLTSKQESVILERL 521
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BLAST of mRNA_H-canaliculatus_F_contig137.2963.1 vs. uniprot
Match: A0A4D9CT31_9STRA (UBX domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CT31_9STRA)

HSP 1 Score: 178 bits (451), Expect = 2.100e-44
Identity = 164/452 (36.28%), Postives = 218/452 (48.23%), Query Frame = 1 
Query:  298 TAGIKYKESLLAVTADGEGDKILLPPSALESLSGQDAVGLGPMLFELTCTSCAPAPAPAGQXXXXSKKNAAPPAAIRTTHAGVLEFTADEGTVGLPRKVVLSLLGATAQQVPLPQNGEEGA-----GEGSEKAPAKRRPVAGLE-SVVVRYVRLAKATFARVVPETVGLSQVSELRAMLENNMRNHATLTVGDHLSVWRRGKEFSLKVVELRPEPHVTVIDTDMEIELDLPEKAREQLEEKSAQDRAKTMRAHMGVATTTSSAGSSPGQSLSPTRRAASAGG--GHVLGGEGAGVTGIGGTRAARSSLLPMDDSEDDXXXIXSDEERSKSGGKNAFDPVKHRLA-KFQELPEEPPTDEEDVFTCQLRSPQG-----RFKRR------FRFGDAIGVLLDFAEAQGGVPGQYRLVVPFPRRILTRDDG---STGTTL-REAGLTSKQESVILE 1581
            TAGI Y   L   T  GEGDKI+LPPSALE+L+ QDA+ LGPMLF+L   S  PA            K+   PA  R THAGVLEF+A++G +GLP KV  SL+   A+     ++G  G      G G E+  ++  P  G    V V+YVRL K T+A+V P T  L  V EL+ MLE N++NHATL+ GD L VW RG+ F L+V  L P   VTVIDTD+ +++++PE+  E+  E+S                                R +A AGG  G V+GG G     +  +  +R     M             EE S + G    +  K  +A +  +L  EP     D     +R P G     RF R       FRF +A  V  D       +   YRLV  FPRR+ T  +    S G  L  EAG   K+E+++ E
Sbjct:   71 TAGITYSCDLWPYTVSGEGDKIILPPSALETLTQQDALALGPMLFQL---SLLPA---------EGNKSKQLPAGARVTHAGVLEFSAEDGRIGLPLKVRKSLV---AEPEETREDGSRGMKERVEGPGGEEGDSRASPAWGSGWKVRVKYVRLEKGTYAKVQPRTGNLWHVPELKGMLEMNLQNHATLSEGDVLQVWYRGRCFDLRVTGLEPTQAVTVIDTDLTVDVEVPEEQTEREREES--------------------------------RLSADAGGVKGQVVGGGGP-PPHVSQSCESRGQEAGM-------------EEPSVNSGAKEEERRKRMMATQLSKLAPEPDEGNGDWIALVVRKPDGSMISRRFLRSQPFQDVFRFVEATSVSSD----HDPLDMTYRLVTRFPRRVFTVGETAAQSVGEVLGSEAG---KRETLMYE 454
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BLAST of mRNA_H-canaliculatus_F_contig137.2963.1 vs. uniprot
Match: A0A7S2XVB4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVB4_9STRA)

HSP 1 Score: 152 bits (385), Expect = 1.110e-39
Identity = 80/109 (73.39%), Postives = 92/109 (84.40%), Query Frame = -1 
Query: 2458 AEPRHYAGLALLKLADNFENHIRIAEEGGIQALLRLGRARSTDEELQYKAALTVGHLASNAVKLLPKGKQKAS-----IGFGATVLQSNADSKARRAQKQTQEHLDQSL 2769
            A PRHYAGLALLKLADNFENHIRIAEEGGIQALLRLGRARSTDEELQYKAALTVGHLASNAVK+LPKGK K S     +GFG +V+QS A   +++ + QT++ + +SL
Sbjct:    3 AVPRHYAGLALLKLADNFENHIRIAEEGGIQALLRLGRARSTDEELQYKAALTVGHLASNAVKMLPKGKGKGSGLSEEVGFGISVMQSRAQEASKKGRDQTKDFIKRSL 111
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BLAST of mRNA_H-canaliculatus_F_contig137.2963.1 vs. uniprot
Match: A0A7S2WWV0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WWV0_9STRA)

HSP 1 Score: 149 bits (375), Expect = 2.720e-38
Identity = 73/87 (83.91%), Postives = 83/87 (95.40%), Query Frame = -1 
Query: 2566 VTLVELGALRPLVSMMAVEAEPRHYAGLALLKLADNFENHIRIAEEGGIQALLRLGRARSTDEELQYKAALTVGHLASNAVKLLPKG 2826
            V LVELGAL+PLVSMMAV+AEPRHYAGLALLKLADNFENH+ IA+EGGIQALLRLGR R+TD+ELQYKAALTVG+LASNAV ++P+G
Sbjct:   29 VRLVELGALKPLVSMMAVQAEPRHYAGLALLKLADNFENHVAIAKEGGIQALLRLGRTRTTDDELQYKAALTVGNLASNAVAMMPRG 115
[Close]
BLAST of mRNA_H-canaliculatus_F_contig137.2963.1 vs. uniprot
Match: A0A7S2HQA5_9STRA (Vacuolar protein 8 (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HQA5_9STRA)

HSP 1 Score: 151 bits (381), Expect = 6.280e-38
Identity = 84/125 (67.20%), Postives = 98/125 (78.40%), Query Frame = -1 
Query: 2467 VTLVELGALRPLVSMMAVEAEPRHYAGLALLKLADNFENHIRIAEEGGIQALLRLGRARSTDEELQYKAALTVGHLASNAVKLLPKGKQKAS-----IGFGATVLQSNADSKARRAQKQTQEHLD 2826
            V LVELGAL+PLVS+MAV AEPRHYAGLALLKLADNF NH+ IA+EGGIQALLRLGR R+TD+ELQYKAALTVG+LASNA KL+P   Q  S     IGF A  L  N  + A+R +++T+  LD
Sbjct:   68 VQLVELGALKPLVSLMAVHAEPRHYAGLALLKLADNFSNHVAIAKEGGIQALLRLGRTRTTDDELQYKAALTVGNLASNAAKLMPTTTQPQSMAGGKIGFAAQQLTRNQVA-AKRGRQRTENFLD 191
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BLAST of mRNA_H-canaliculatus_F_contig137.2963.1 vs. uniprot
Match: A0A835Z6R1_9STRA (Vacuolar protein 8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6R1_9STRA)

HSP 1 Score: 153 bits (387), Expect = 1.000e-33
Identity = 80/118 (67.80%), Postives = 97/118 (82.20%), Query Frame = -1 
Query: 2464 RPLVSMMAVEAEPRHYAGLALLKLADNFENHIRIAEEGGIQALLRLGRARSTDEELQYKAALTVGHLASNAVKLLPK----GKQ--KASIGFGATVLQSNADSKARRAQKQTQEHLDQ 2799
            RPLVSMM+  AEPRHYAGLALLKLADNF NH+ IA EGGIQALLRLGR+R TDEELQYKAAL+VGH+ASNAV+LLP+    G Q   A IG GA  +Q+  D+KARRAQ+ T++++++
Sbjct: 3904 RPLVSMMSTAAEPRHYAGLALLKLADNFNNHLAIANEGGIQALLRLGRSRETDEELQYKAALSVGHMASNAVRLLPRSGGGGAQGLSAEIGAGAAAMQARVDAKARRAQRSTRQYVEE 4021
[Close]
BLAST of mRNA_H-canaliculatus_F_contig137.2963.1 vs. uniprot
Match: A0A067C8H7_SAPPC (Vacuolar protein 8 n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C8H7_SAPPC)

HSP 1 Score: 150 bits (379), Expect = 5.290e-33
Identity = 75/127 (59.06%), Postives = 105/127 (82.68%), Query Frame = -1 
Query: 2452 VTLVELGALRPLVSMMAVEAEPRHYAGLALLKLADNFENHIRIAEEGGIQALLRLGRARSTDEELQYKAALTVGHLASNAVKLLPKGKQKAS-IGFGATVLQSNADS-KARRAQKQTQEHLDQSLRA 2826
            V  V +GALRPL+++M+V AEPRHYAGLALLKLADN+ENHI+IAEEGGIQALLR+ RARSTDEELQYKA++++G LA+NA K++PKG+     +G GA+ + +  +  +AR+A++ T E++++ +RA
Sbjct: 1187 VKFVNMGALRPLIAIMSVNAEPRHYAGLALLKLADNYENHIKIAEEGGIQALLRIARARSTDEELQYKASMSLGQLAANATKVMPKGRHSNDGVGAGASRMAATTEQLQARKARETTTEYIEKKIRA 1313
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BLAST of mRNA_H-canaliculatus_F_contig137.2963.1 vs. uniprot
Match: A0A7S0C944_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C944_9STRA)

HSP 1 Score: 134 bits (336), Expect = 1.500e-32
Identity = 67/83 (80.72%), Postives = 75/83 (90.36%), Query Frame = -1 
Query: 2578 VTLVELGALRPLVSMMAVEAEPRHYAGLALLKLADNFENHIRIAEEGGIQALLRLGRARSTDEELQYKAALTVGHLASNAVKL 2826
            V LV++GA+RPLVS+MA  +EP+HYAGLALLKLADNFENHI IAEEGGI+ALLRLGR R TDEELQYKAALTVG LASNAV +
Sbjct:   64 VKLVKIGAVRPLVSIMATNSEPKHYAGLALLKLADNFENHITIAEEGGIEALLRLGRNRVTDEELQYKAALTVGQLASNAVNI 146
[Close]
BLAST of mRNA_H-canaliculatus_F_contig137.2963.1 vs. uniprot
Match: A0A662YG13_9STRA (UBX domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YG13_9STRA)

HSP 1 Score: 141 bits (356), Expect = 2.990e-32
Identity = 125/316 (39.56%), Postives = 174/316 (55.06%), Query Frame = 1 
Query:   88 LNLDSRGSKLQKEQQKRRDAARLRLQRERRSKEAAARDQARIEEQIKAKKLEQXXXXXXXXXXXXXEQIRTAGIKYKESLLAVTADGEGDKILLPPSALESLSGQDAVGLGPMLFELTCTSCAPAPAPAGQXXXXSKKNAAPPAAIRTTHAGVLEFTADEGTVGLPRKVVLSLLGATAQQVPLPQNGEEGAGEGSEKAPAKRRPVAGLESVVVRYVRLAKATFARVVPETVGLSQVS-ELRAMLENNMRNHATLTVGDHLSVWRRGKE-FSLKVVELRPEPHVTVIDTDMEIELDLP-------EKAREQLEEKSA 1008
            L+L+SR +K  +EQ KRRD A+ +++ ERR + A A+ +  +E     K++E XXXXXXXX     EQ  T GIKY + L  V   G+GDKI LP SALE L+ Q+A+ LG   FEL+     P    + Q               R THAGVLEF ADEGTVGLP KV  SL    A+Q+P                          +++ VR+VRL K  FA + P   G  +   + + +LE +++ H TLTVGD L V R G+E F + V EL+PE  V +++TD+E+ + LP       ++A +QLEE++A
Sbjct:    3 LDLNSRSAKWNREQTKRRDQAKRKIEAERRKRVAVAKAREELEALQTQKRVEXXXXXXXXXQQALEEQRLTGGIKYLQQLRPVPTSGDGDKITLPVSALEELNPQNALELGVFTFELSYDE--PEATESWQ---------------RKTHAGVLEFVADEGTVGLPPKVAASLF-QNAKQLP--------------------------DNIRVRFVRLEKGKFASLQPRGDGFGERQIDFKHLLERSLKAHTTLTVGDVLFV-RHGRETFEVVVAELKPEEAVNILNTDLEVAI-LPSESAARAKEAEKQLEEEAA 272
[Close]
BLAST of mRNA_H-canaliculatus_F_contig137.2963.1 vs. uniprot
Match: A0A0W8CLD7_PHYNI (Ubiquitin fusion degradation protein 1 n=9 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CLD7_PHYNI)

HSP 1 Score: 141 bits (356), Expect = 1.120e-31
Identity = 114/316 (36.08%), Postives = 165/316 (52.22%), Query Frame = 1 
Query:   88 LNLDSRGSKLQKEQQKRRDAARLRLQRERRSKEAAARDQARIEEQIKAKKLEQXXXXXXXXXXXXXEQIRTAGIKYKESLLAVTADGEGDKILLPPSALESLSGQDAVGLGPMLFELTCTSCAPAPAPAGQXXXXSKKNAAPPAAIRTTHAGVLEFTADEGTVGLPRKVVLSLLGATAQQVPLPQNGEEGAGEGSEKAPAKRRPVAGLESVVVRYVRLAKATFARVVPETVGLSQVS-ELRAMLENNMRNHATLTVGDHLSVWRRGKE-FSLKVVELRPEPHVTVIDTDMEIELDLP-------EKAREQLEEKSA 1008
            L+L+SR +K  +EQ KRR+ A+ +++ ERR + AAA+    +E+    K++E+             EQ  T GI+Y + L  V   G+GDKI LP SALE L+ Q+A+ LG   FEL+                  ++      A R THAGVLEF ADEGTVGLP KV  SL   T +   LP                        +S+ VR+VRL K  FA + P   G      + + MLE +++ H TLT GD L V R G+E F + V EL+PE  + +++TD+E+++ +P       ++A  QLEE++A
Sbjct:    3 LDLNSRNAKWNREQNKRREQAKRKIETERRKRAAAAKASEELEKLQMQKRVERIAELERQEQQALEEQRLTGGIRYLKQLRPVPTTGDGDKIALPVSALEELNPQNALELGVFTFELSFDE--------------DQQGGEASIAKRQTHAGVLEFVADEGTVGLPPKVAASLFRHTKE---LP------------------------DSIQVRFVRLEKGKFASLQPRGEGFGDRQIDFKHMLERSLKAHTTLTEGDVLFV-RHGRETFEVLVAELKPERAINILNTDLEVDM-IPCEAVAKKKEAERQLEEEAA 275
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig137.2963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT74_ECTSI2.010e-20571.35UBX domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A4D9CT31_9STRA2.100e-4436.28UBX domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A7S2XVB4_9STRA1.110e-3973.39Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2WWV0_9STRA2.720e-3883.91Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2HQA5_9STRA6.280e-3867.20Vacuolar protein 8 (Fragment) n=1 Tax=Dictyocha sp... [more]
A0A835Z6R1_9STRA1.000e-3367.80Vacuolar protein 8 n=1 Tax=Tribonema minus TaxID=3... [more]
A0A067C8H7_SAPPC5.290e-3359.06Vacuolar protein 8 n=1 Tax=Saprolegnia parasitica ... [more]
A0A7S0C944_9STRA1.500e-3280.72Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A662YG13_9STRA2.990e-3239.56UBX domain-containing protein n=1 Tax=Nothophytoph... [more]
A0A0W8CLD7_PHYNI1.120e-3136.08Ubiquitin fusion degradation protein 1 n=9 Tax=Phy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig137contigH-canaliculatus_F_contig137:9948..15135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score618.2
Seed ortholog evalue3.3e-174
Seed eggNOG ortholog2880.D7FT74
Preferred nameubxn8
KEGG koko:K14016,ko:K18726
KEGG Pathwayko04141,map04141
KEGG ModuleM00400,M00403
EggNOG free text desc.ER-associated misfolded protein catabolic process
EggNOG OGsCOG5140@1,KOG1363@1,KOG1363@2759,KOG1816@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin fusion degradation protein UFD1
Ec32 orthologEc-06_003840.1
Exons4
Model size3414
Cds size1515
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig137.2963.1prot_H-canaliculatus_F_contig137.2963.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig137 10023..13311 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929110.345696-UTR-H-canaliculatus_F_contig137:9947..100221622929110.345696-UTR-H-canaliculatus_F_contig137:9947..10022Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig137 9948..10022 +
1696845682.5348234-UTR-H-canaliculatus_F_contig137:9947..100221696845682.5348234-UTR-H-canaliculatus_F_contig137:9947..10022Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig137 9948..10022 +
1622929110.4329224-UTR-H-canaliculatus_F_contig137:13311..151351622929110.4329224-UTR-H-canaliculatus_F_contig137:13311..15135Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig137 13312..15135 +
1696845682.591798-UTR-H-canaliculatus_F_contig137:13311..151351696845682.591798-UTR-H-canaliculatus_F_contig137:13311..15135Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig137 13312..15135 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929110.3629732-CDS-H-canaliculatus_F_contig137:10022..100511622929110.3629732-CDS-H-canaliculatus_F_contig137:10022..10051Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig137 10023..10051 +
1696845682.5503407-CDS-H-canaliculatus_F_contig137:10022..100511696845682.5503407-CDS-H-canaliculatus_F_contig137:10022..10051Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig137 10023..10051 +
1622929110.3806565-CDS-H-canaliculatus_F_contig137:10364..105241622929110.3806565-CDS-H-canaliculatus_F_contig137:10364..10524Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig137 10365..10524 +
1696845682.5611434-CDS-H-canaliculatus_F_contig137:10364..105241696845682.5611434-CDS-H-canaliculatus_F_contig137:10364..10524Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig137 10365..10524 +
1622929110.3974154-CDS-H-canaliculatus_F_contig137:11113..117491622929110.3974154-CDS-H-canaliculatus_F_contig137:11113..11749Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig137 11114..11749 +
1696845682.5714166-CDS-H-canaliculatus_F_contig137:11113..117491696845682.5714166-CDS-H-canaliculatus_F_contig137:11113..11749Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig137 11114..11749 +
1622929110.4150858-CDS-H-canaliculatus_F_contig137:12621..133111622929110.4150858-CDS-H-canaliculatus_F_contig137:12621..13311Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig137 12622..13311 +
1696845682.5815675-CDS-H-canaliculatus_F_contig137:12621..133111696845682.5815675-CDS-H-canaliculatus_F_contig137:12621..13311Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig137 12622..13311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig137.2963.1

>prot_H-canaliculatus_F_contig137.2963.1 ID=prot_H-canaliculatus_F_contig137.2963.1|Name=mRNA_H-canaliculatus_F_contig137.2963.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=505bp
MVDFLNLDSRGSKLQKEQQKRRDAARLRLQRERRSKEAAARDQARIEEQI
KAKKLEQRRKEEEARKQEEAEQIRTAGIKYKESLLAVTADGEGDKILLPP
SALESLSGQDAVGLGPMLFELTCTSCAPAPAPAGQQQQQSKKNAAPPAAI
RTTHAGVLEFTADEGTVGLPRKVVLSLLGATAQQVPLPQNGEEGAGEGSE
KAPAKRRPVAGLESVVVRYVRLAKATFARVVPETVGLSQVSELRAMLENN
MRNHATLTVGDHLSVWRRGKEFSLKVVELRPEPHVTVIDTDMEIELDLPE
KAREQLEEKSAQDRAKTMRAHMGVATTTSSAGSSPGQSLSPTRRAASAGG
GHVLGGEGAGVTGIGGTRAARSSLLPMDDSEDDDSDIDSDEERSKSGGKN
AFDPVKHRLAKFQELPEEPPTDEEDVFTCQLRSPQGRFKRRFRFGDAIGV
LLDFAEAQGGVPGQYRLVVPFPRRILTRDDGSTGTTLREAGLTSKQESVI
LEML*
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mRNA from alignment at H-canaliculatus_F_contig137:9948..15135+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig137.2963.1 ID=mRNA_H-canaliculatus_F_contig137.2963.1|Name=mRNA_H-canaliculatus_F_contig137.2963.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=5188bp|location=Sequence derived from alignment at H-canaliculatus_F_contig137:9948..15135+ (Hapterophycus canaliculatus Oshoro5f female)
GCGAGAGACAAACCTCTGTTGCAGCACACTCTCGACAGCACCTGTCAACG
TTTACTTCAGCGACATCAAGTGAAGATGGTGGATTTTCTCAACCTGGATT
CGAGGTACACACAGTTCAGCTTGTACAGTGATCCGGACTATTCTCCCTTT
CAAACCCCCAACGAGTTGATGAGCCGAGAGGACTACTGAGACTCCGAGCG
CCGAGTACCTAGTGTCGCACGAGACTGCAGCAGTCTCAAGCCAACCCAGT
AGGTAGCACGCCCCTCCTGCCTACCAGCTATCGGCGTTGGGTCATCTTTG
CTACCTTCGAGAACGCGATTTGTTCAGTTTGGTTGTCACGCGGGCGCTTA
TCTCCCCCCCCGCATTTCGTTTCGCATGTGGTTTCGAACGTTTGAACTTG
CCGTCAAACCTCGACAGGGGGAGCAAGCTCCAAAAAGAGCAACAGAAACG
ACGAGACGCCGCGAGGCTGAGACTCCAGAGAGAAAGGCGGTCTAAGGAAG
CGGCTGCGAGGGATCAGGCTAGAATCGAGGAGCAGATCAAGGCGAAGAAG
CTCGAGCAGCGGCGGAAAGAGGAAGAGGTGGGTCTCTTGACTCGGGAGTA
AAGATGAAATAGTCCCGCGCGCCAAGGTCTCATGGCGGAGGCTCTGCGGG
GTGTTGCCAGGCAACAGGATACATATATGATAGCGGAAGGCGGTATGCAC
CGTCCAGCTTTTCTCACCAGGAAACCGCTACGGACGTACGCGTGTCGCGC
GTATCGCACGTGCAGTTGTCCAATTTCTGTGCCTTGGTACGGTGTTTTGA
ATTTCAGGCCCGTCACAAGCGCCCGCCTTGCTCCCCAGTCCTCTAGGCGA
ACGCCTCGTCGCTGGCGGGCCGACTAGAGCGGAGGATGCCACACAGGTTA
TCGCAAGAACACCTTTTCCTCCGGGTGAACATCATCAGTATCTCGCCAGG
GTAGAGACGCTCTTCGACGAATCAGCTCCCTTTCCGAACGGTTTCATCTC
GCGCGCAAATCTACCCCCGGCAAGATGCGCAGGCGCACACACGACGGGAA
TGCCTTGCGATTTAATCGCGCCAAGAGGTTCCCTCAGCGTCGCTGTGTAC
TTCAGTCTGCCGCCGTTCTGACGAACGAAGCGCCGTGCCCCTTCGCAATA
TGAACCCCACAAACAGGCGCGGAAGCAGGAAGAAGCGGAACAGATCCGAA
CCGCGGGCATTAAGTACAAGGAGTCCCTCCTGGCGGTCACGGCGGACGGC
GAGGGAGACAAGATCCTCTTGCCGCCTTCCGCCCTGGAATCTCTCTCCGG
GCAGGACGCCGTTGGCCTGGGACCCATGCTGTTCGAGCTGACGTGCACCT
CCTGCGCTCCCGCTCCCGCTCCCGCTGGCCAGCAACAACAACAATCGAAG
AAAAATGCGGCGCCGCCAGCCGCAATTCGAACAACACACGCAGGCGTTCT
GGAGTTCACGGCGGACGAGGGCACCGTTGGCCTCCCGAGAAAAGTGGTGC
TGAGCCTCCTTGGGGCCACTGCCCAACAGGTGCCGCTCCCACAGAACGGC
GAGGAGGGAGCGGGCGAGGGATCGGAAAAAGCACCGGCCAAGAGGCGGCC
CGTGGCGGGGCTAGAGAGCGTGGTCGTGAGGTACGTCCGGCTGGCCAAGG
CGACCTTCGCGAGAGTGGTGCCCGAGACGGTTGGGTTATCGCAGGTTTCG
GAGCTGAGGGCGATGCTGGAGAACAATATGCGAAACCACGCGACGCTCAC
GGTCGGGGATCACCTGAGCGTGTGGCGGCGAGGAAAAGAGTTCAGTCTAA
AGGTGAGCGGGGCGATCGACCAAGCGCAAGTAGGCTTCTCACGGGGATGG
GGGAAAGCGTACATGTTGCAAAGGGGTTTCCATTCAGGCTTTGCCGTTCG
GTTCACATAATTCGAGAACGCTCAACATCGCGTGAAAAACGCCCATCGAC
GATATTCGCGCGTAGTGAAATAGCTGAACTGGAGTTCACGGAGCAGGTAA
GCTGGACTCTATTGTAAAATGTCGGCAGTTGGTTTGAATGCCGGGGCAGG
TTTCCCCCTGACTGCTTTTTCACATAATCGCAAGTTGATTTTTTGTCGTT
AGTTTTTCCCTGAAGAAAATGAGACTGATATATAGATTTTCAACGTTATA
CAGATGCTAACACGTGCGGGTTTCGGATTCCCTCCCACAGCGTTACTCAT
CATGACCGTCTTCCCCGACCCAAGCACGTGGTCGTAGCCTACTTTTTAAA
TCAAGGTTGAGAAACTGTTGTTGCATGTCGTGCCTGGCCCCTGTTTGGAA
CAGGGCATGGATATCAAATGCGTCTTATTTGTTTCTGGATCAGGGCATTT
ACGACGTTGAGGGGCGACGTCGCTCGCATGAAGTGCGTGCCCAATTCTCC
CTCTCGTTACGCCCCGGCTTTTGGAGGTGTTGGAACGGTGTGTCCACAAA
ATCTGTCTGTCCTCGTGTACACTTCGGCAGCGAGTGGAAAGTTCTGAACA
TTCGGCGGCAGGTGTCTTGTTGGTAACGTACGAACGACGCCAAAGAAGAT
ACCTCTCCCCGCCTCTTTCGGTGCGCGCATCTGGAGTCCTTTGCTTTCTG
TCGGTAACGTTCTAGGAGTTATACCCCTCGCTCGCCCCTCGCCCGGCCGA
ACCCTTTGTGTCGTGGAAATGCAGGTGGTTGAGCTACGCCCGGAGCCTCA
CGTTACAGTGATCGATACCGACATGGAAATCGAATTAGACTTGCCGGAAA
AGGCGAGAGAGCAGCTCGAGGAAAAGAGCGCGCAAGACCGAGCAAAAACG
ATGCGTGCGCACATGGGTGTCGCGACTACAACGTCCTCCGCCGGCTCTTC
TCCTGGTCAGAGCTTGTCCCCAACGCGGAGAGCGGCGTCGGCGGGAGGAG
GACATGTATTGGGGGGGGAGGGCGCAGGGGTGACAGGGATAGGTGGTACG
AGAGCTGCAAGAAGTAGCTTGTTACCCATGGACGACAGCGAAGATGACGA
TTCAGATATCGACTCCGACGAAGAGCGATCGAAGAGTGGTGGGAAAAACG
CCTTCGATCCCGTTAAACACCGCCTCGCGAAGTTCCAGGAACTCCCGGAG
GAACCCCCAACAGACGAAGAGGACGTGTTTACCTGCCAACTGCGCAGTCC
GCAGGGGAGGTTCAAGCGGCGTTTTCGTTTCGGGGATGCGATTGGGGTGC
TGTTAGATTTTGCCGAAGCTCAAGGCGGCGTACCGGGACAGTACAGACTG
GTCGTGCCGTTCCCCAGACGAATTTTGACGAGGGATGACGGGTCGACGGG
TACGACCTTGCGAGAAGCGGGGCTCACCTCCAAGCAAGAATCGGTGATTT
TGGAGATGCTCTAGGCACCCCAACGTTCAGTTTTGTAGAAAAAATGTGAC
AGGTGTTGTTATTTGGTGGTCCCTGATCAAGGAGCCCCGATGGTCGGATT
GGCTTCGTGATTCTTGACGAAGTCTTCCGTCGTTGGGTTCGTGATCACTC
GACCTGTACATGTGTTTTATTCAAGAGGTTTGGTGTCTAGCTATCACTGC
TGTGTTTCGTGTTTCGAGGCAAAATAAGCTTGGGGTAGATACGAAGCAGA
TAGGGGTGCTCCTGACGACGTAAAAGGTGATAGTCGTGGAGTGCTTGAGA
GACGAAGCAGCGTTAAAGCATCGGCACCCAGCGAACGTCAAGTCTGTGGC
TTTTGGAATTCCGGAAAGTGTGAGTGAGCGTATTTTGGTCGTTTCACGTC
TACTTCCACGGAGAGCAGGGAAAGCAGACACCACTGAAAACTTTTCAGTG
CTGAGGTTTGCGCGTTGTCTCGCCGCGTTCTGTTTCTCTGTCCTCTAGAG
CAACAGCGGTCTTGTTGTTTGTTCTACCTGATGTCATAGAAACTGTTAGT
TTGAGCTCAGATCGGCTTCGGTGGCTTTTTACTTCGTTCTTCTCGTCGTT
GTTGGAGGACCCTCCCATATTGAGGGACGGAAGAATTGATTTGAGACGTT
TGGGCGCAAGCTGCGCAACACCCCTGCAGCCGGCCGTTGATTGGTGCCTC
CTCTAGCTCTGCTATCGCACGTTGTCTAGGTTCCAATAGGGGCGAATCGA
AATAATTTAGACACCTGCGTGAGTGGATTCGAAGGCTTTGCAGTCTGTGC
GGCACTTTTTTTTTTGAGAAAATTCCGAGGAGTATCATGCCGTCAAAATG
ACTTAAGATTTCCTCTACGCTATCCCGCTCTCAGAGACTGATCCAAGTGC
TCCTGCGTCTGCTTCTGCGCTCGCCGCGCCTTGCTGTCTGCGTTGCTTTG
GAGCACGGTGGCCCCGAATCCTATGCTGGCCTTCTGCTTGCCCTTCGGGA
GAAGTTTGACCGCATTGGACGCCAGGTGGCCCACGGTCAGGGCAGCCTTG
TACTGCAGCTCTTCGTCCGTGGATCGCGCACGCCCAAGCCTCAGGAGGGC
CTGGATCCCACCCTCTTCGGCAATGCGGATGTGGTTCTCGAAGTTGTCGG
CCAGCTTCAGTAGGGCAAGCCCGGCGTAGTGGCGAGGCTCGGCCTCCACC
GCCATCATGCTCACCAAGGGGCGCAGGGCACCTAGCTCAACCAGCGTGAC
CTAAATTCAGTTGTGTCGAAGTGCGGACGGAGGAACGAAGGCAAACCGAA
TGGCGGTTGGTCGCACTAGCCAAGCAAACCTCCATGGACCGTGCTGAAAG
TTAAGCTTGCCCTACTGAAGCTGTGGCCATCAAGGGACCAGGCTTTTTCG
AAGGCAGGATGCAAGAGGATGTGATGGATCTGTATTTGAGGACTCCACGC
GTGTTCCGATATCTCCGAGCGTATATACGGTAGAACCATGAGAGCACTTC
GATTTTTGGCCAGAGCTGAGCTCGGTTCTTTGTTGCTGAACTGTTGCGTG
GTAAATGGAACACGATTTCGACTTTCCTGGTCGACGGCATGATGGCAGGA
AAAGCGTAGTGCCTGCTGTTACGGCGTGAGTATCAGCGATACGCACTTGT
CCCAAGGAGGTTGAGCACCATGGATGCACGAATCGCAAGTACGGAAAAGA
GCCGTTCGTTTAAGGTACCTCGTGTGTTTTCCGGAAGCGTAACAATTGAC
AAAGGAGATGCGACCCATTCTACCGTCCCTTCGACTATGCCGTAAAAGGG
GGAGAGGAAAGGAAGCAAAGCTCATCTCTTGTAAAAAC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig137:9948..15135+

>mRNA_H-canaliculatus_F_contig137.2963.1 ID=mRNA_H-canaliculatus_F_contig137.2963.1|Name=mRNA_H-canaliculatus_F_contig137.2963.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=3030bp|location=Sequence derived from alignment at H-canaliculatus_F_contig137:9948..15135+ (Hapterophycus canaliculatus Oshoro5f female)
ATGGTGGATTTTCTCAACCTGGATTCGAGATGGTGGATTTTCTCAACCTG
GATTCGAGGGGGAGCAAGCTCCAAAAAGAGCAACAGAAACGACGAGACGC
CGCGAGGCTGAGACTCCAGAGAGAAAGGCGGTCTAAGGAAGCGGCTGCGA
GGGATCAGGCTAGAATCGAGGAGCAGATCAAGGCGAAGAAGCTCGAGCAG
CGGCGGAAAGAGGAAGAGGGGGAGCAAGCTCCAAAAAGAGCAACAGAAAC
GACGAGACGCCGCGAGGCTGAGACTCCAGAGAGAAAGGCGGTCTAAGGAA
GCGGCTGCGAGGGATCAGGCTAGAATCGAGGAGCAGATCAAGGCGAAGAA
GCTCGAGCAGCGGCGGAAAGAGGAAGAGGCGCGGAAGCAGGAAGAAGCGG
AACAGATCCGAACCGCGGGCATTAAGTACAAGGAGTCCCTCCTGGCGGTC
ACGGCGGACGGCGAGGGAGACAAGATCCTCTTGCCGCCTTCCGCCCTGGA
ATCTCTCTCCGGGCAGGACGCCGTTGGCCTGGGACCCATGCTGTTCGAGC
TGACGTGCACCTCCTGCGCTCCCGCTCCCGCTCCCGCTGGCCAGCAACAA
CAACAATCGAAGAAAAATGCGGCGCCGCCAGCCGCAATTCGAACAACACA
CGCAGGCGTTCTGGAGTTCACGGCGGACGAGGGCACCGTTGGCCTCCCGA
GAAAAGTGGTGCTGAGCCTCCTTGGGGCCACTGCCCAACAGGTGCCGCTC
CCACAGAACGGCGAGGAGGGAGCGGGCGAGGGATCGGAAAAAGCACCGGC
CAAGAGGCGGCCCGTGGCGGGGCTAGAGAGCGTGGTCGTGAGGTACGTCC
GGCTGGCCAAGGCGACCTTCGCGAGAGTGGTGCCCGAGACGGTTGGGTTA
TCGCAGGTTTCGGAGCTGAGGGCGATGCTGGAGAACAATATGCGAAACCA
CGCGACGCTCACGGTCGGGGATCACCTGAGCGTGTGGCGGCGAGGAAAAG
AGTTCAGTCTAAAGGCGCGGAAGCAGGAAGAAGCGGAACAGATCCGAACC
GCGGGCATTAAGTACAAGGAGTCCCTCCTGGCGGTCACGGCGGACGGCGA
GGGAGACAAGATCCTCTTGCCGCCTTCCGCCCTGGAATCTCTCTCCGGGC
AGGACGCCGTTGGCCTGGGACCCATGCTGTTCGAGCTGACGTGCACCTCC
TGCGCTCCCGCTCCCGCTCCCGCTGGCCAGCAACAACAACAATCGAAGAA
AAATGCGGCGCCGCCAGCCGCAATTCGAACAACACACGCAGGCGTTCTGG
AGTTCACGGCGGACGAGGGCACCGTTGGCCTCCCGAGAAAAGTGGTGCTG
AGCCTCCTTGGGGCCACTGCCCAACAGGTGCCGCTCCCACAGAACGGCGA
GGAGGGAGCGGGCGAGGGATCGGAAAAAGCACCGGCCAAGAGGCGGCCCG
TGGCGGGGCTAGAGAGCGTGGTCGTGAGGTACGTCCGGCTGGCCAAGGCG
ACCTTCGCGAGAGTGGTGCCCGAGACGGTTGGGTTATCGCAGGTTTCGGA
GCTGAGGGCGATGCTGGAGAACAATATGCGAAACCACGCGACGCTCACGG
TCGGGGATCACCTGAGCGTGTGGCGGCGAGGAAAAGAGTTCAGTCTAAAG
GTGGTTGAGCTACGCCCGGAGCCTCACGTTACAGTGATCGATACCGACAT
GGAAATCGAATTAGACTTGCCGGAAAAGGCGAGAGAGCAGCTCGAGGAAA
AGAGCGCGCAAGACCGAGCAAAAACGATGCGTGCGCACATGGGTGTCGCG
ACTACAACGTCCTCCGCCGGCTCTTCTCCTGGTCAGAGCTTGTCCCCAAC
GCGGAGAGCGGCGTCGGCGGGAGGAGGACATGTATTGGGGGGGGAGGGCG
CAGGGGTGACAGGGATAGGTGGTACGAGAGCTGCAAGAAGTAGCTTGTTA
CCCATGGACGACAGCGAAGATGACGATTCAGATATCGACTCCGACGAAGA
GCGATCGAAGAGTGGTGGGAAAAACGCCTTCGATCCCGTTAAACACCGCC
TCGCGAAGTTCCAGGAACTCCCGGAGGAACCCCCAACAGACGAAGAGGAC
GTGTTTACCTGCCAACTGCGCAGTCCGCAGGGGAGGTTCAAGCGGCGTTT
TCGTTTCGGGGATGCGATTGGGGTGCTGTTAGATTTTGCCGAAGCTCAAG
GCGGCGTACCGGGACAGTACAGACTGGTCGTGCCGTTCCCCAGACGAATT
TTGACGAGGGATGACGGGTCGACGGGTACGACCTTGCGAGAAGCGGGGCT
CACCTCCAAGCAAGAATCGGTGATTTTGGAGATGCTCTAGGTGGTTGAGC
TACGCCCGGAGCCTCACGTTACAGTGATCGATACCGACATGGAAATCGAA
TTAGACTTGCCGGAAAAGGCGAGAGAGCAGCTCGAGGAAAAGAGCGCGCA
AGACCGAGCAAAAACGATGCGTGCGCACATGGGTGTCGCGACTACAACGT
CCTCCGCCGGCTCTTCTCCTGGTCAGAGCTTGTCCCCAACGCGGAGAGCG
GCGTCGGCGGGAGGAGGACATGTATTGGGGGGGGAGGGCGCAGGGGTGAC
AGGGATAGGTGGTACGAGAGCTGCAAGAAGTAGCTTGTTACCCATGGACG
ACAGCGAAGATGACGATTCAGATATCGACTCCGACGAAGAGCGATCGAAG
AGTGGTGGGAAAAACGCCTTCGATCCCGTTAAACACCGCCTCGCGAAGTT
CCAGGAACTCCCGGAGGAACCCCCAACAGACGAAGAGGACGTGTTTACCT
GCCAACTGCGCAGTCCGCAGGGGAGGTTCAAGCGGCGTTTTCGTTTCGGG
GATGCGATTGGGGTGCTGTTAGATTTTGCCGAAGCTCAAGGCGGCGTACC
GGGACAGTACAGACTGGTCGTGCCGTTCCCCAGACGAATTTTGACGAGGG
ATGACGGGTCGACGGGTACGACCTTGCGAGAAGCGGGGCTCACCTCCAAG
CAAGAATCGGTGATTTTGGAGATGCTCTAG
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