mRNA_H-canaliculatus_F_contig13677.2953.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13677.2953.1
Unique NamemRNA_H-canaliculatus_F_contig13677.2953.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13677.2953.1 vs. uniprot
Match: A0A6H5JMF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF6_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 5.910e-28
Identity = 76/168 (45.24%), Postives = 91/168 (54.17%), Query Frame = 1 
Query:   49 IPNLFTVTPAPTYEEMLQWAEETDKRIAAGQLPPLGSRRHASGAXXXXXXXXXXXXXXXQSSGATFLSDEEHAQMATLAELLGKRRKQGSPLSEEEESSLRQARGPTAMAGLSASIENDQETERVSSSASGTLGSDPSPSYPSHPSAADDDDGRADDLVHNQIYGSRE 552
            + N   VTP PTYEEML WAEETD+RIA GQLPPLGSRR  SG                Q +GA  LSD E AQMATL+ELL              ES+LR      AMAGLSAS+E D + + +  +A  + G D S         A   +  A+D++ N IYGSRE
Sbjct:   31 VCNAIRVTPVPTYEEMLVWAEETDRRIATGQLPPLGSRRPPSG-----DAAVTVTAAEQQGAGACLLSDHEQAQMATLSELLSXXXXXXXXXXXXXESALR-----AAMAGLSASVEKDTDAKALDVAADTSSGPDTSDGD----ITAAGHEAEAEDIIPNHIYGSRE 184
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13677.2953.1 vs. uniprot
Match: D7G7I8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7I8_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 2.920e-21
Identity = 67/156 (42.95%), Postives = 85/156 (54.49%), Query Frame = 1 
Query:   94 MLQWAEETDKRIAAGQLPPLGSRRHASGAXXXXXXXXXXXXXXXQSSGATFLSDEEHAQMATLAELLGKRRKQGSPLSEEEESSLRQARGPTAMAGLSASIENDQETERVSSSASGTLGSDPSPSYPSHPSAADDDDGRADDLVHNQIYGSREVRN 561
            ML WAEETD+RIA GQLPPLGSRR  SG                Q +GA+ LSD+E AQMATL+ELL              ES+LR      A+AGLSAS+E D + + +  +A  + G D S    +           A+D++ N IYGSREVR+
Sbjct:    1 MLVWAEETDRRIATGQLPPLGSRRPPSG-----DGAVTVTAAEQQGAGASLLSDQEQAQMATLSELLSXXXXXXXXXXXXXESALR-----AAIAGLSASVEKDTDAKALDVAADTSSGPDTSDGDVTAAGHV----AEAEDIIPNHIYGSREVRD 142
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13677.2953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMF6_9PHAE5.910e-2845.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7I8_ECTSI2.920e-2142.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13677contigH-canaliculatus_F_contig13677:83..2381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_000450.1
Exons4
Model size585
Cds size585
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13677.2953.1prot_H-canaliculatus_F_contig13677.2953.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13677 83..2381 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929108.411441-CDS-H-canaliculatus_F_contig13677:82..3021622929108.411441-CDS-H-canaliculatus_F_contig13677:82..302Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13677 83..302 -
1696845681.9784057-CDS-H-canaliculatus_F_contig13677:82..3021696845681.9784057-CDS-H-canaliculatus_F_contig13677:82..302Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13677 83..302 -
1622929108.4271262-CDS-H-canaliculatus_F_contig13677:707..8021622929108.4271262-CDS-H-canaliculatus_F_contig13677:707..802Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13677 708..802 -
1696845681.987418-CDS-H-canaliculatus_F_contig13677:707..8021696845681.987418-CDS-H-canaliculatus_F_contig13677:707..802Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13677 708..802 -
1622929108.4469643-CDS-H-canaliculatus_F_contig13677:1813..20171622929108.4469643-CDS-H-canaliculatus_F_contig13677:1813..2017Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13677 1814..2017 -
1696845681.9960122-CDS-H-canaliculatus_F_contig13677:1813..20171696845681.9960122-CDS-H-canaliculatus_F_contig13677:1813..2017Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13677 1814..2017 -
1622929108.4629235-CDS-H-canaliculatus_F_contig13677:2315..23811622929108.4629235-CDS-H-canaliculatus_F_contig13677:2315..2381Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13677 2316..2381 -
1696845682.0039337-CDS-H-canaliculatus_F_contig13677:2315..23811696845682.0039337-CDS-H-canaliculatus_F_contig13677:2315..2381Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13677 2316..2381 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13677.2953.1

>prot_H-canaliculatus_F_contig13677.2953.1 ID=prot_H-canaliculatus_F_contig13677.2953.1|Name=mRNA_H-canaliculatus_F_contig13677.2953.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=195bp
EQGRDEGHAKQDRGEDIPNLFTVTPAPTYEEMLQWAEETDKRIAAGQLPP
LGSRRHASGAAGAAAAAAAATATAQQSSGATFLSDEEHAQMATLAELLGK
RRKQGSPLSEEEESSLRQARGPTAMAGLSASIENDQETERVSSSASGTLG
SDPSPSYPSHPSAADDDDGRADDLVHNQIYGSREVRNCSCSGSL*
back to top

mRNA from alignment at H-canaliculatus_F_contig13677:83..2381-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13677.2953.1 ID=mRNA_H-canaliculatus_F_contig13677.2953.1|Name=mRNA_H-canaliculatus_F_contig13677.2953.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2299bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13677:83..2381- (Hapterophycus canaliculatus Oshoro5f female)
GAACAGGGGCGCGACGAAGGTCATGCCAAACAGGACAGAGGCGAGGACAT
CCCCAACCTCTTCACGGTATGTCGAACCCGAGCGGACACCGCACGCATGC
GTGCGAAGGCACTTGCGCAGGCACGCCGAGCCCGCAAGCCCCGCCGGCCC
CTCGGCCCGCGGGAACGCCACCCCTTTCTCCAAAACTTTTCACCGTGCCT
TCTCATACGAGTCGACGAGTCCCATGGAGAATCCTTTGGAAGGAAACGCA
CGAAGAGTCCCGTCACTCAGCGGCGAAAGATCTAGAGGGAGTTACCTCGA
GCAGCTGGTGCTGGGCATGGTGGATGAAGTTAAGTCTGTCTAACGTAAGT
TTCCGTTTGTTCAGGTAACCCCTGCCCCTACCTACGAGGAAATGCTCCAG
TGGGCAGAGGAAACCGACAAGCGAATAGCTGCGGGGCAGCTCCCTCCGCT
AGGCTCGCGCAGGCATGCTTCGGGGGCGGCAGGAGCAGCGGCGGCGGCTG
CGGCGGCGACGGCGACGGCGCAGCAATCATCAGGGGCGACCTTTCTCAGC
GATGAGGAGCACGCGCAGGTGTGCTCTCGCGTTTGTGTTCTCGGCGATCA
ACGTTTTTGCCGGTGGTTCGAAAGGAGGCGGTGGTTGGAAAGGAGGCAAT
TGTTGGGGTTGACTTGGCTGGATCCTTGACTAGTCCAGCTGTCTTCTAGG
ACAACACCGTTTCAAGATGGTTGCTGAGTTCGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCCACTGAGCCCCTGTTATACGTTAGCCGGCGCGCC
TCTCTCGACAAGCCAAACCGGCCACCGTATGAGATGTGGGTTTTGCTTCT
TTCCTAACTGTATGGCATTTCGCGGAGTGTGCTTGAAGGCTCTCTGCGTA
ATCGTTTCGTATCTTCGTATCGCCGTGGAAGCGCCGAGCACGACGTAAGC
GCGCGCATCGTGTTGAACGCGCACAGTTACCGTTTACCATTGGGCACATC
TGCGCGGGTCGACGTGGACCGCAAGATTTCAAACACAAAAGCAAGACCAG
GGCTCAAGGTCAAGAACATGGCTCGGGGCGCGACTGAAAGCGTCCTTTGG
ATGAGATCCCGAACCCGAAGGGAGTTCGCGGTTTCTTCCTGCCGCTGTCT
CGAGGGCATCATTGTTTGTGGTGCTGTCGTCGACTTCCTGTCGCTTTCTC
AATGGGATTGTTGCTTTGGTGTCGTCGTCGAGCCTTCTTCGGTGCCTGAC
CTTTCGTCGTCGTATCTGCCGAGTCGATCTTGCCCGTGCTGGACAACGAA
AGTCCGCGCAAAGGGGAAGGACCTGGTAGGCACTGACGGGGCTCGTCTCC
AATGAGATTGTTTCGGAATCGTACATGGTGAAAAAGAGGCGCAGAGAGAG
CAAACTTGTCTTCCCGGAGCAGTGGGTGGTCTTGGAGATGGGGATGTCGC
TGCGAGATGGGGATGTCGCCGCTCGCAGCAACACTGCTGACCCCATGTTC
CAAGTGCTCCTGCATCCCGCCACCTTGACTACTGCTGTATGCTTGTTGTC
TGGGTCACCTTCGGATTGTCTTCGTGCAGATGGCGACCCTGGCTGAGCTC
CTCGGCAAGCGACGAAAACAGGGCTCTCCCCTGTCTGAAGAAGAAGAGTC
CTCCCTTAGGCAAGCGCGTGGCCCGTTCTTCGAGTATGATATTTTGCAAT
CAAGACGCTGTGTATCGCGCCTTTTCGAAGCCGAGGTGTTGTCCCTGCTT
GGTTGTGCATGCATCTATCTTCCGGACTCTGTTGGAAGACACGGAAACAT
AATCGACGCTCTCAGCAACACTGTCTTCAAATATCGTTCATCGTTTGTCG
CCATGTCCGCTCGCGCACAAGGGGGACCCTTAGCCACAGATTTCGTTCCC
TTCTATAACGATATAACTCCGTCGCATACTACACTTTTTTTTAAAGGAAA
AGAGTAAGCGATACGTAAGAAACGCTGTCTGAGGTCAAGACTCGGGAGGA
TTCGCAGCGTATTTCTGATTGACGTTCAGCGCGTCGGCCGGCGACAACAG
CATCGATTTTGATTTGAATGTTGGCGCAGGACTGCCATGGCCGGCCTTTC
TGCCTCAATAGAAAACGACCAAGAAACGGAGCGCGTGAGCAGCAGTGCTA
GCGGTACGCTTGGCAGCGATCCCAGCCCGAGCTATCCCTCCCACCCGTCT
GCTGCTGATGACGACGACGGGCGGGCGGACGACTTGGTCCACAACCAAAT
CTACGGGTCGCGGGAGGTGAGAAACTGCTCGTGCTCTGGCTCCTTGTGA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13677:83..2381-

>mRNA_H-canaliculatus_F_contig13677.2953.1 ID=mRNA_H-canaliculatus_F_contig13677.2953.1|Name=mRNA_H-canaliculatus_F_contig13677.2953.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1170bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13677:83..2381- (Hapterophycus canaliculatus Oshoro5f female)
GAACAGGGGCGCGACGAAGGTCATGCCAAACAGGACAGAGGCGAGGACAT
CCCCAACCTCTTCACGGAACAGGGGCGCGACGAAGGTCATGCCAAACAGG
ACAGAGGCGAGGACATCCCCAACCTCTTCACGGTAACCCCTGCCCCTACC
TACGAGGAAATGCTCCAGTGGGCAGAGGAAACCGACAAGCGAATAGCTGC
GGGGCAGCTCCCTCCGCTAGGCTCGCGCAGGCATGCTTCGGGGGCGGCAG
GAGCAGCGGCGGCGGCTGCGGCGGCGACGGCGACGGCGCAGCAATCATCA
GGGGCGACCTTTCTCAGCGATGAGGAGCACGCGCAGGTAACCCCTGCCCC
TACCTACGAGGAAATGCTCCAGTGGGCAGAGGAAACCGACAAGCGAATAG
CTGCGGGGCAGCTCCCTCCGCTAGGCTCGCGCAGGCATGCTTCGGGGGCG
GCAGGAGCAGCGGCGGCGGCTGCGGCGGCGACGGCGACGGCGCAGCAATC
ATCAGGGGCGACCTTTCTCAGCGATGAGGAGCACGCGCAGATGGCGACCC
TGGCTGAGCTCCTCGGCAAGCGACGAAAACAGGGCTCTCCCCTGTCTGAA
GAAGAAGAGTCCTCCCTTAGGCAAGCGCGTGGCCCATGGCGACCCTGGCT
GAGCTCCTCGGCAAGCGACGAAAACAGGGCTCTCCCCTGTCTGAAGAAGA
AGAGTCCTCCCTTAGGCAAGCGCGTGGCCCGACTGCCATGGCCGGCCTTT
CTGCCTCAATAGAAAACGACCAAGAAACGGAGCGCGTGAGCAGCAGTGCT
AGCGGTACGCTTGGCAGCGATCCCAGCCCGAGCTATCCCTCCCACCCGTC
TGCTGCTGATGACGACGACGGGCGGGCGGACGACTTGGTCCACAACCAAA
TCTACGGGTCGCGGGAGGTGAGAAACTGCTCGTGCTCTGGCTCCTTGTGA
GACTGCCATGGCCGGCCTTTCTGCCTCAATAGAAAACGACCAAGAAACGG
AGCGCGTGAGCAGCAGTGCTAGCGGTACGCTTGGCAGCGATCCCAGCCCG
AGCTATCCCTCCCACCCGTCTGCTGCTGATGACGACGACGGGCGGGCGGA
CGACTTGGTCCACAACCAAATCTACGGGTCGCGGGAGGTGAGAAACTGCT
CGTGCTCTGGCTCCTTGTGA
back to top