mRNA_H-canaliculatus_F_contig13670.2952.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13670.2952.1
Unique NamemRNA_H-canaliculatus_F_contig13670.2952.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13670.2952.1 vs. uniprot
Match: A0A6H5KD18_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD18_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 2.030e-31
Identity = 71/99 (71.72%), Postives = 77/99 (77.78%), Query Frame = 2 
Query:  215 SLPGAETARLWGLGGGGTGRQQRAFVGQSNEPDDGDMDEVFAKLQQEQFWEGVEHAGMGVLEEEVKEKKSKVIFADVAKACSIGAQMTLIMGGGALLFR 511
            S PGAE A  WGLGGG  GR    F   S+ PDD DM EVFAK Q+EQFWE VE+AGM VLEEEV EKK+K IFA VA+ACS+GAQMTLIMGGGALLFR
Sbjct:   64 SSPGAEAAGSWGLGGGRAGR---GFPVGSDGPDDDDMAEVFAKFQEEQFWEDVEYAGMEVLEEEVAEKKTKEIFAQVARACSVGAQMTLIMGGGALLFR 159
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13670.2952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KD18_9PHAE2.030e-3171.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13670contigH-canaliculatus_F_contig13670:1562..2928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_003320.1
Exons2
Model size792
Cds size591
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13670.2952.1prot_H-canaliculatus_F_contig13670.2952.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13670 1596..2761 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929108.264126-UTR-H-canaliculatus_F_contig13670:1561..15951622929108.264126-UTR-H-canaliculatus_F_contig13670:1561..1595Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13670 1562..1595 +
1696845681.9439797-UTR-H-canaliculatus_F_contig13670:1561..15951696845681.9439797-UTR-H-canaliculatus_F_contig13670:1561..1595Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13670 1562..1595 +
1622929108.339686-UTR-H-canaliculatus_F_contig13670:2761..29281622929108.339686-UTR-H-canaliculatus_F_contig13670:2761..2928Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13670 2762..2928 +
1696845681.9696991-UTR-H-canaliculatus_F_contig13670:2761..29281696845681.9696991-UTR-H-canaliculatus_F_contig13670:2761..2928Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13670 2762..2928 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929108.3084571-CDS-H-canaliculatus_F_contig13670:1595..19191622929108.3084571-CDS-H-canaliculatus_F_contig13670:1595..1919Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13670 1596..1919 +
1696845681.9526136-CDS-H-canaliculatus_F_contig13670:1595..19191696845681.9526136-CDS-H-canaliculatus_F_contig13670:1595..1919Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13670 1596..1919 +
1622929108.3250008-CDS-H-canaliculatus_F_contig13670:2494..27611622929108.3250008-CDS-H-canaliculatus_F_contig13670:2494..2761Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13670 2495..2761 +
1696845681.961149-CDS-H-canaliculatus_F_contig13670:2494..27611696845681.961149-CDS-H-canaliculatus_F_contig13670:2494..2761Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13670 2495..2761 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13670.2952.1

>prot_H-canaliculatus_F_contig13670.2952.1 ID=prot_H-canaliculatus_F_contig13670.2952.1|Name=mRNA_H-canaliculatus_F_contig13670.2952.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=197bp
MLVHLTADTTTRRPPVLQPYVAGHSTVNTRRCCCGRRGGFGRASTWSHPP
IGSLLLLIALSLPGAETARLWGLGGGGTGRQQRAFVGQSNEPDDGDMDEV
FAKLQQEQFWEGVEHAGMGVLEEEVKEKKSKVIFADVAKACSIGAQMTLI
MGGGALLFRSETLDGSHRQSHVARKKGCVSLGDANFLCRRCVMRVA*
back to top

mRNA from alignment at H-canaliculatus_F_contig13670:1562..2928+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13670.2952.1 ID=mRNA_H-canaliculatus_F_contig13670.2952.1|Name=mRNA_H-canaliculatus_F_contig13670.2952.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1367bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13670:1562..2928+ (Hapterophycus canaliculatus Oshoro5f female)
CAACGGTTGAACACACCGAAACAGCGAAAGAGCGATGTTAGTCCACCTCA
CCGCAGATACGACCACCAGACGGCCGCCTGTATTGCAACCATACGTCGCC
GGCCACTCGACGGTCAACACTCGAAGATGCTGTTGCGGCCGTCGAGGAGG
ATTTGGCCGAGCCTCCACGTGGTCACATCCTCCGATCGGCTCACTGCTGC
TCTTGATTGCGCTGTCCTTGCCGGGAGCGGAGACTGCGAGACTGTGGGGT
TTGGGGGGCGGAGGAACGGGTCGGCAGCAGCGAGCTTTTGTTGGACAGTC
CAATGAACCTGATGATGGAGATATGGATGAAGTTTTCGCCAAGTTGCAGC
AAGAGCAGGTATGATAGCAGCAGCCCTGTTCGAAACCAGTGAACAAAGTC
TATCGAGCTCTGCCCGTCGCTATCGCGCAGTCCTTAGCCGTCTTCTCCCT
GGCGGCGGATGTACTCTTTGCCTGAGCAAGGCTCGTCTCCATCCGTTGGT
CTCAGCAGTTGAAAAGCGCTGCTGCTGTTGACGTTCGATCTTTTGATCCT
CCCCAAAACATCCCCATAGACACAAACGGCGCTCACAGGACACATGTACG
GCGAACGCCGTACAGCAGTACTTGCACCCGCAGGACTTGTGCTCAACTAG
CTTACAAGTACAAGGCCGCCAGTAGTCTACGGATACTCAAAGTCCCCACG
AAGGAGGCCGGGACGACAGAACCGGTGTTTCTGTGAATGGAGCGTTCGCA
GCCATCATTTCATTGTACACCATGTGAGACGATCAAATCGCTCGACTTCT
AAACCGGGGCATGCCGCGATTCCATTACTACTGCTGTGAATGCGCCAGTT
TGGACTTTGAACGCGTCTTTCCAACCCCTGTCTTTATTTCTCTACCGCCG
TGTACGTCTGTTTCCCGCTGCTGGCGTCTCCAGTTCTGGGAGGGGGTCGA
GCACGCGGGGATGGGTGTGCTCGAGGAAGAGGTCAAGGAAAAGAAGAGCA
AGGTGATATTCGCCGATGTCGCCAAGGCTTGCTCGATCGGGGCGCAGATG
ACCCTCATCATGGGCGGCGGGGCTCTCCTGTTCAGGTCTGAGACGCTTGA
TGGATCGCATCGACAGAGTCATGTGGCCAGAAAAAAAGGTTGCGTGTCCC
TGGGGGATGCCAATTTTCTCTGTCGTAGGTGCGTGATGCGCGTGGCGTGA
CTGCGCGCTCAAGGGGTAGCGAAAGAGGAAAGGGCCAACCGTTGTGTCAT
GTGTCGACACACGCACGCGAAAGTTTTGGAAATGGACGGCGGTAAGGATG
AACCATGAACCTTGCTTTTTGCTGTCCAGACACACACACGCCCAGCGGTA
CTCGACAGCAATCGCAG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13670:1562..2928+

>mRNA_H-canaliculatus_F_contig13670.2952.1 ID=mRNA_H-canaliculatus_F_contig13670.2952.1|Name=mRNA_H-canaliculatus_F_contig13670.2952.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1182bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13670:1562..2928+ (Hapterophycus canaliculatus Oshoro5f female)
ATGTTAGTCCACCTCACCGCAGATACGACCACCAGACGGCCGCCTGTATT
GCAACCATACGTCGCCGGCCACTCGACGGTCAACACTCGAAGATGCTGTT
GCGGCCGTCGAGGAGGATTTGGCCGAGCCTCCACGTGGTCACATCCTCCG
ATCGGCTCACTGCTGCTCTTGATTGCGCTGTCCTTGCCGGGAGCGGAGAC
TGCGAGACTGTGGGGTTTGGGGGGCGGAGGAACGGGTCGGCAGCAGCGAG
CTTTTGTTGGACAGTCCAATGAACCTGATGATGGAGATATGGATGAAGTT
TTCGCCAAGTTGCAGCAAGAGCAGATGTTAGTCCACCTCACCGCAGATAC
GACCACCAGACGGCCGCCTGTATTGCAACCATACGTCGCCGGCCACTCGA
CGGTCAACACTCGAAGATGCTGTTGCGGCCGTCGAGGAGGATTTGGCCGA
GCCTCCACGTGGTCACATCCTCCGATCGGCTCACTGCTGCTCTTGATTGC
GCTGTCCTTGCCGGGAGCGGAGACTGCGAGACTGTGGGGTTTGGGGGGCG
GAGGAACGGGTCGGCAGCAGCGAGCTTTTGTTGGACAGTCCAATGAACCT
GATGATGGAGATATGGATGAAGTTTTCGCCAAGTTGCAGCAAGAGCAGTT
CTGGGAGGGGGTCGAGCACGCGGGGATGGGTGTGCTCGAGGAAGAGGTCA
AGGAAAAGAAGAGCAAGGTGATATTCGCCGATGTCGCCAAGGCTTGCTCG
ATCGGGGCGCAGATGACCCTCATCATGGGCGGCGGGGCTCTCCTGTTCAG
GTCTGAGACGCTTGATGGATCGCATCGACAGAGTCATGTGGCCAGAAAAA
AAGGTTGCGTGTCCCTGGGGGATGCCAATTTTCTCTGTCGTAGGTGCGTG
ATGCGCGTGGCGTGATTCTGGGAGGGGGTCGAGCACGCGGGGATGGGTGT
GCTCGAGGAAGAGGTCAAGGAAAAGAAGAGCAAGGTGATATTCGCCGATG
TCGCCAAGGCTTGCTCGATCGGGGCGCAGATGACCCTCATCATGGGCGGC
GGGGCTCTCCTGTTCAGGTCTGAGACGCTTGATGGATCGCATCGACAGAG
TCATGTGGCCAGAAAAAAAGGTTGCGTGTCCCTGGGGGATGCCAATTTTC
TCTGTCGTAGGTGCGTGATGCGCGTGGCGTGA
back to top