mRNA_H-canaliculatus_F_contig13666.2948.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13666.2948.1
Unique NamemRNA_H-canaliculatus_F_contig13666.2948.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13666.2948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13666contigH-canaliculatus_F_contig13666:2597..3010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size414
Cds size309
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929107.6875737-CDS-H-canaliculatus_F_contig13666:2596..29051622929107.6875737-CDS-H-canaliculatus_F_contig13666:2596..2905Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13666 2597..2905 +
1696845681.6955998-CDS-H-canaliculatus_F_contig13666:2596..29051696845681.6955998-CDS-H-canaliculatus_F_contig13666:2596..2905Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13666 2597..2905 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929107.7023828-UTR-H-canaliculatus_F_contig13666:2905..30101622929107.7023828-UTR-H-canaliculatus_F_contig13666:2905..3010Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13666 2906..3010 +
1696845681.7067797-UTR-H-canaliculatus_F_contig13666:2905..30101696845681.7067797-UTR-H-canaliculatus_F_contig13666:2905..3010Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13666 2906..3010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13666.2948.1prot_H-canaliculatus_F_contig13666.2948.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13666 2597..2905 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13666.2948.1

>prot_H-canaliculatus_F_contig13666.2948.1 ID=prot_H-canaliculatus_F_contig13666.2948.1|Name=mRNA_H-canaliculatus_F_contig13666.2948.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=103bp
AVQRKDGRGCDLQQLRRGRRERLPGVRRRVRAGGCGGERARRLLRGVRRR
PPRILRQEFGRGSRGGGVGPGGPLGVRCLWTSPQQLDVVRVCGFRRRACV
SG*
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mRNA from alignment at H-canaliculatus_F_contig13666:2597..3010+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13666.2948.1 ID=mRNA_H-canaliculatus_F_contig13666.2948.1|Name=mRNA_H-canaliculatus_F_contig13666.2948.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=414bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13666:2597..3010+ (Hapterophycus canaliculatus Oshoro5f female)
GCCGTCCAGAGGAAGGATGGGCGGGGGTGCGATCTACAGCAGCTACGGAG
GGGGCGCCGAGAACGTCTGCCCGGCGTGCGGCGTAGAGTTCGAGCGGGGG
GGTGCGGAGGGGAGCGTGCCCGTCGTCTCCTGCGAGGCGTGCGGCGCCGC
CCACCACGAATTTTGCGTCAAGAGTTTGGGCGGGGGAGCCGGGGTGGGGG
AGTGGGGCCTGGAGGCCCCTTGGGTGTGCGTTGCCTGTGGACGAGCCCAC
AGCAACTAGACGTGGTGAGGGTGTGTGGTTTTAGAAGGCGCGCGTGCGTG
AGCGGCTAGCCAGGGAGAGAGAGAGAGAGAGGGAGAGAGAGAGAGAGAAA
GCGCGGAGCACGGGCAGGGGCTAATTTGATGTTGTCATAGTCGTCTGCTG
GTGTTTGGTCGGGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13666:2597..3010+

>mRNA_H-canaliculatus_F_contig13666.2948.1 ID=mRNA_H-canaliculatus_F_contig13666.2948.1|Name=mRNA_H-canaliculatus_F_contig13666.2948.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=618bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13666:2597..3010+ (Hapterophycus canaliculatus Oshoro5f female)
GCCGTCCAGAGGAAGGATGGGCGGGGGTGCGATCTACAGCAGCTACGGAG
GGGGCGCCGAGAACGTCTGCCCGGCGTGCGGCGTAGAGTTCGAGCGGGGG
GGTGCGGAGGGGAGCGTGCCCGTCGTCTCCTGCGAGGCGTGCGGCGCCGC
CCACCACGAATTTTGCGTCAAGAGTTTGGGCGGGGGAGCCGGGGTGGGGG
AGTGGGGCCTGGAGGCCCCTTGGGTGTGCGTTGCCTGTGGACGAGCCCAC
AGCAACTAGACGTGGTGAGGGTGTGTGGTTTTAGAAGGCGCGCGTGCGTG
AGCGGCTAGGCCGTCCAGAGGAAGGATGGGCGGGGGTGCGATCTACAGCA
GCTACGGAGGGGGCGCCGAGAACGTCTGCCCGGCGTGCGGCGTAGAGTTC
GAGCGGGGGGGTGCGGAGGGGAGCGTGCCCGTCGTCTCCTGCGAGGCGTG
CGGCGCCGCCCACCACGAATTTTGCGTCAAGAGTTTGGGCGGGGGAGCCG
GGGTGGGGGAGTGGGGCCTGGAGGCCCCTTGGGTGTGCGTTGCCTGTGGA
CGAGCCCACAGCAACTAGACGTGGTGAGGGTGTGTGGTTTTAGAAGGCGC
GCGTGCGTGAGCGGCTAG
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