mRNA_H-canaliculatus_F_contig1364.2932.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1364.2932.1
Unique NamemRNA_H-canaliculatus_F_contig1364.2932.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1364.2932.1 vs. uniprot
Match: D7G7K5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K5_ECTSI)

HSP 1 Score: 250 bits (638), Expect = 2.470e-83
Identity = 126/146 (86.30%), Postives = 132/146 (90.41%), Query Frame = 1 
Query:    1 AGKPRQAVVDAGVGVCLRPRVAAGFVRLSAAFEAQGRHADVVRACFLGMRCGDSSKNGELGRAMSRAREAGELPPLDWTPANRRERWTWAFLSFRGFLLRTAAGIAARLRLGGAGEGLALAACAKGEGFVQPPWPPGAMPPVLLVA 438
            AG PR+AVVDAGVGVCLRPRVAAGF RLSA+FEAQGRHADVVRACFLGMRCGDSSKNGELGR MS AREAG+LPPLDWTP +RRERWTWAFLSFRGFLLR AAGIA RLR+GGAG  LALAACA G+GF  PPWP GAMPPVLL A
Sbjct:    2 AGNPRKAVVDAGVGVCLRPRVAAGFARLSASFEAQGRHADVVRACFLGMRCGDSSKNGELGRRMSSAREAGQLPPLDWTPPDRRERWTWAFLSFRGFLLRLAAGIAGRLRVGGAG--LALAACAGGQGFSSPPWPRGAMPPVLLEA 145
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BLAST of mRNA_H-canaliculatus_F_contig1364.2932.1 vs. uniprot
Match: A0A6H5KG81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG81_9PHAE)

HSP 1 Score: 244 bits (622), Expect = 5.420e-80
Identity = 123/146 (84.25%), Postives = 128/146 (87.67%), Query Frame = 1 
Query:    1 AGKPRQAVVDAGVGVCLRPRVAAGFVRLSAAFEAQGRHADVVRACFLGMRCGDSSKNGELGRAMSRAREAGELPPLDWTPANRRERWTWAFLSFRGFLLRTAAGIAARLRLGGAGEGLALAACAKGEGFVQPPWPPGAMPPVLLVA 438
            AG PR+AVVDAGVGVCLRPRVAAGF RLSA FEAQGRHADVVRACFLGMRCGDSSKNGELGR MS AREAG+LPPLDWTP +RRERWTWAFLSFRGFLLR AAGIA RLR+GGAG  LAL AC  G+G   PPWP GAMPPVLL A
Sbjct:   64 AGNPRKAVVDAGVGVCLRPRVAAGFARLSATFEAQGRHADVVRACFLGMRCGDSSKNGELGRRMSSAREAGQLPPLDWTPPDRRERWTWAFLSFRGFLLRLAAGIAGRLRVGGAG--LALGACEGGQGLSSPPWPRGAMPPVLLEA 207
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1364.2932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7K5_ECTSI2.470e-8386.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KG81_9PHAE5.420e-8084.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1364contigH-canaliculatus_F_contig1364:18414..20095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_002070.1
Exons3
Model size450
Cds size450
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1364.2932.1prot_H-canaliculatus_F_contig1364.2932.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1364 18414..20095 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929105.9208837-CDS-H-canaliculatus_F_contig1364:18413..185541622929105.9208837-CDS-H-canaliculatus_F_contig1364:18413..18554Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1364 18414..18554 +
1696845681.1300066-CDS-H-canaliculatus_F_contig1364:18413..185541696845681.1300066-CDS-H-canaliculatus_F_contig1364:18413..18554Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1364 18414..18554 +
1622929105.934962-CDS-H-canaliculatus_F_contig1364:18920..190361622929105.934962-CDS-H-canaliculatus_F_contig1364:18920..19036Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1364 18921..19036 +
1696845681.1406827-CDS-H-canaliculatus_F_contig1364:18920..190361696845681.1406827-CDS-H-canaliculatus_F_contig1364:18920..19036Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1364 18921..19036 +
1622929105.950201-CDS-H-canaliculatus_F_contig1364:19902..200951622929105.950201-CDS-H-canaliculatus_F_contig1364:19902..20095Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1364 19903..20095 +
1696845681.1491568-CDS-H-canaliculatus_F_contig1364:19902..200951696845681.1491568-CDS-H-canaliculatus_F_contig1364:19902..20095Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1364 19903..20095 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1364.2932.1

>prot_H-canaliculatus_F_contig1364.2932.1 ID=prot_H-canaliculatus_F_contig1364.2932.1|Name=mRNA_H-canaliculatus_F_contig1364.2932.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=150bp
AGKPRQAVVDAGVGVCLRPRVAAGFVRLSAAFEAQGRHADVVRACFLGMR
CGDSSKNGELGRAMSRAREAGELPPLDWTPANRRERWTWAFLSFRGFLLR
TAAGIAARLRLGGAGEGLALAACAKGEGFVQPPWPPGAMPPVLLVASGD*
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mRNA from alignment at H-canaliculatus_F_contig1364:18414..20095+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1364.2932.1 ID=mRNA_H-canaliculatus_F_contig1364.2932.1|Name=mRNA_H-canaliculatus_F_contig1364.2932.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1682bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1364:18414..20095+ (Hapterophycus canaliculatus Oshoro5f female)
GCGGGGAAACCGCGCCAGGCGGTCGTGGACGCCGGGGTCGGGGTCTGCCT
GCGTCCGAGAGTGGCGGCGGGGTTCGTACGGCTCTCCGCAGCGTTCGAGG
CACAGGGACGGCACGCTGATGTCGTCCGGGCGTGCTTCCTGGTGAGCGTT
TGAACGCAAGACCGTTGTAGTATTTTTGACCATGCTGCTGATGCTGATGC
TGCTGCTCTGCGTGTGCATTCCGGTGTGCTGCTGCCAATAAGTAGTATTT
TTTAGCAATACATGACCACACCGTAGGAACACCTCCTGAGTTATGTCCTA
TGAGTTCCAAACAACGATGGTTGATTGGGACGAAAACATCAAGACAAAAA
CTAGGAAGCTCAGTGTAGTGTATGTATGGTGAACTACGTATGAAGTGTCG
ACTCTTTGTTCTACGCTGGTGGTGGTGGTGGTTATGATGATGATTGTGAT
ATCGCTGATGATGGCGTAAACGCTGATGATGCTCTTATCATCGTTGATCG
ATGTCAGGGGATGAGATGTGGCGACAGCAGCAAGAACGGGGAGCTAGGCC
GGGCAATGTCTAGAGCCAGGGAGGCCGGCGAACTCCCTCCTCTAGACTGG
ACCCCAGCGAATAGACGCGAAAGGTGTGCTGCCGATTTCCAACGTCGGCC
GCCGATGCGTCGACGCGATGGGCGACATACTATTTCGTGTAATCTTCGTT
GGTCCTGTTGCTGGTGATTTTGCTGCTGCCATGGCCGCTGCCGCCTCCAC
CGCTGTCGTGGTCGTTGATTTCCTCCTCGTCGTCGTCGTCGTCATTTTTG
TTGTTGTTGCTTTTGTCGCTTTTGTTACTCTTCTGCTTTTGTTCTTGCTT
ATGCTGCTGGTGCTGCTGATGCTGCTGGTGCTACTACTGATTATGTTGCT
GTCATCGTCGACGGTGGCGTTGTCGATTTTGGTTCTCATGGTCAGACACT
GAAAGCCAAACCCAAGACACAAGGCCTATCTTACTTCAATTGAAATTGTG
CCTCTTACTGGCTCATCGCTCGAGTCCAATAACCTTGATTTTTGACGCAC
GGGTATTGGCAAGCCAGACGCCGCAATGTAAAGAAGACAGGCGTACAAGA
ATACACGTCATGAGTCGTCCGGCGTGGAACATTGGGTGAAGGTGCTCATC
GATCCAAGAGCCTGGTCGGCACGACGTTGGGTTCGGACAAACACAACTAA
CCCCTGATTGGTGTCGTGCCCCGTAGCATTTTTGGTCCACTTCTGGAGAA
GCAAAGAAGAGTTCAGCATCGCAACGCACACAAATCACGGACAGAATCGA
GCGCACGCACCCTACCTGCCGTTTCCGAGGTGGGCGCCAAAGATCCGACG
CAAAAAGCAATGCCTGTGCACTTTGCGCCCTTTCCCGATTTGTTAATCTC
TCCAGAGCATCGTTTCGAGAAACGACACGTTGCCGTTAACACCTCTTTTC
TTTTTTCGTTTGTCGTCGGTGGCGTGTGTGCAACTCCAGGTGGACGTGGG
CGTTTCTATCCTTCCGCGGCTTCCTCTTGCGCACGGCGGCCGGGATCGCC
GCACGTCTTCGCCTGGGGGGAGCGGGAGAGGGCCTCGCGCTAGCAGCCTG
CGCGAAGGGGGAAGGCTTTGTGCAACCTCCCTGGCCGCCAGGGGCGATGC
CCCCGGTGCTTCTCGTGGCATCCGGAGATTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1364:18414..20095+

>mRNA_H-canaliculatus_F_contig1364.2932.1 ID=mRNA_H-canaliculatus_F_contig1364.2932.1|Name=mRNA_H-canaliculatus_F_contig1364.2932.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=900bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1364:18414..20095+ (Hapterophycus canaliculatus Oshoro5f female)
GCGGGGAAACCGCGCCAGGCGGTCGTGGACGCCGGGGTCGGGGTCTGCCT
GCGTCCGAGAGTGGCGGCGGGGTTCGTACGGCTCTCCGCAGCGTTCGAGG
CACAGGGACGGCACGCTGATGTCGTCCGGGCGTGCTTCCTGGCGGGGAAA
CCGCGCCAGGCGGTCGTGGACGCCGGGGTCGGGGTCTGCCTGCGTCCGAG
AGTGGCGGCGGGGTTCGTACGGCTCTCCGCAGCGTTCGAGGCACAGGGAC
GGCACGCTGATGTCGTCCGGGCGTGCTTCCTGGGGATGAGATGTGGCGAC
AGCAGCAAGAACGGGGAGCTAGGCCGGGCAATGTCTAGAGCCAGGGAGGC
CGGCGAACTCCCTCCTCTAGACTGGACCCCAGCGAATAGACGCGAAAGGG
GATGAGATGTGGCGACAGCAGCAAGAACGGGGAGCTAGGCCGGGCAATGT
CTAGAGCCAGGGAGGCCGGCGAACTCCCTCCTCTAGACTGGACCCCAGCG
AATAGACGCGAAAGGTGGACGTGGGCGTTTCTATCCTTCCGCGGCTTCCT
CTTGCGCACGGCGGCCGGGATCGCCGCACGTCTTCGCCTGGGGGGAGCGG
GAGAGGGCCTCGCGCTAGCAGCCTGCGCGAAGGGGGAAGGCTTTGTGCAA
CCTCCCTGGCCGCCAGGGGCGATGCCCCCGGTGCTTCTCGTGGCATCCGG
AGATTAGGTGGACGTGGGCGTTTCTATCCTTCCGCGGCTTCCTCTTGCGC
ACGGCGGCCGGGATCGCCGCACGTCTTCGCCTGGGGGGAGCGGGAGAGGG
CCTCGCGCTAGCAGCCTGCGCGAAGGGGGAAGGCTTTGTGCAACCTCCCT
GGCCGCCAGGGGCGATGCCCCCGGTGCTTCTCGTGGCATCCGGAGATTAG
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