mRNA_H-canaliculatus_F_contig13635.2928.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13635.2928.1
Unique NamemRNA_H-canaliculatus_F_contig13635.2928.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13635.2928.1 vs. uniprot
Match: A0A6H5LNR6_9PHAE (UBX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNR6_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 3.190e-33
Identity = 66/80 (82.50%), Postives = 70/80 (87.50%), Query Frame = 1 
Query:    1 QVQFPDRVVLQATFASTEAVKDLLEVVQSSLGDHSQGRALELYVSPPRTVLKAASSLSDAGLVPAALVYVSWREVPPAGE 240
            +VQFPDRVVLQ+TFASTE VKDLL+VV+SSL D    R  ELYVSPPR VLKAASSLSDAGLVPAALVYVSWREVPP GE
Sbjct:  298 KVQFPDRVVLQSTFASTEGVKDLLDVVKSSLEDDVAARPFELYVSPPRVVLKAASSLSDAGLVPAALVYVSWREVPPTGE 377
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13635.2928.1 vs. uniprot
Match: A0A7S2V2I9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2I9_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 6.370e-16
Identity = 40/81 (49.38%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:    1 QVQFPDRVVLQATFASTEAVKDLLEVVQSSLGDHSQGRALELYVSPPRTVLKAASSLSDAGLVPAALVYVSWREVPPAGEQ 243
            +VQFPDRVV+QA F   E+V  ++++V+ +L      R   LYVSPP+T L A   L+  GLVPAALVY+SW   PP G +
Sbjct:  284 RVQFPDRVVIQAHFHPRESVGTVIDLVRQNLSPDHANRPFHLYVSPPKTKLAAEDLLTAQGLVPAALVYLSWESTPPEGPE 364
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13635.2928.1 vs. uniprot
Match: H3GCB5_PHYRM (UBX domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GCB5_PHYRM)

HSP 1 Score: 79.7 bits (195), Expect = 1.370e-15
Identity = 38/82 (46.34%), Postives = 53/82 (64.63%), Query Frame = 1 
Query:    1 QVQFPDRVVLQATFASTEAVKDLLEVVQSSLGDHSQGRALELYVSPPRTVLKAASSLSDAGLVPAALVYVSWREVPPAGEQA 246
            +VQFPDR V+QA+F   E ++D++  V   LGD  +G    LYV+PP   L A  +L++  L+PAAL Y+SW EVPP  + A
Sbjct:  411 RVQFPDRAVMQASFHPNETIQDVMNHVTECLGDQYKGNKFYLYVTPPTQKLAATKTLAELNLIPAALSYLSWLEVPPQTDAA 492
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13635.2928.1 vs. uniprot
Match: A0A6A4ACN2_9STRA (UBX domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A4ACN2_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.580e-15
Identity = 37/82 (45.12%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:    1 QVQFPDRVVLQATFASTEAVKDLLEVVQSSLGDHSQGRALELYVSPPRTVLKAASSLSDAGLVPAALVYVSWREVPPAGEQA 246
            +VQFPDR V+QA+F   E ++D+++ V   LG+  +G    LYV+PP   L  A++L++  LVPAAL Y+SW E+PP  + A
Sbjct:  474 RVQFPDRAVMQASFHPNETIQDVMDHVTECLGEQYKGGKFYLYVTPPTQKLVPANTLAELNLVPAALTYLSWLELPPQADMA 555
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13635.2928.1 vs. uniprot
Match: D7FT67_ECTSI (PUB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT67_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 4.020e-15
Identity = 38/40 (95.00%), Postives = 38/40 (95.00%), Query Frame = 1 
Query:  121 ELYVSPPRTVLKAASSLSDAGLVPAALVYVSWREVPPAGE 240
            ELYVSPPR VLKAASSLSDAGLVPAALVYVSWREVPP GE
Sbjct:  223 ELYVSPPRVVLKAASSLSDAGLVPAALVYVSWREVPPTGE 262
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13635.2928.1 vs. uniprot
Match: G4YTH0_PHYSP (UBX domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YTH0_PHYSP)

HSP 1 Score: 78.2 bits (191), Expect = 4.760e-15
Identity = 37/80 (46.25%), Postives = 52/80 (65.00%), Query Frame = 1 
Query:    1 QVQFPDRVVLQATFASTEAVKDLLEVVQSSLGDHSQGRALELYVSPPRTVLKAASSLSDAGLVPAALVYVSWREVPPAGE 240
            +VQFPDR V+QA+F   E ++D+++ V   L +  +G    LYV+PP   L  A +L+D  LVPAAL Y+SW E+PP  E
Sbjct:  444 RVQFPDRAVMQASFHPNETIQDVMDHVTECLAEQFKGGKFYLYVTPPTQKLAPAKTLADLNLVPAALTYLSWSEMPPQAE 523
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13635.2928.1 vs. uniprot
Match: A0A3M6VAR4_9STRA (UBX domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VAR4_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.670e-14
Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 1 
Query:    1 QVQFPDRVVLQATFASTEAVKDLLEVVQSSLGDHSQGRALELYVSPPRTVLKAASSLSDAGLVPAALVYVSWREVPPAGEQA 246
            +VQFPDR V+QA+F   E ++D+++ V   L D  +     LYV+PP   L A+ +L +  LVPAAL Y+SW EVPP  E A
Sbjct:  463 RVQFPDRAVMQASFHPNETIQDVMDHVTKCLDDQYKASKFYLYVTPPTQRLAASKTLVELNLVPAALTYLSWLEVPPQAEVA 544
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13635.2928.1 vs. uniprot
Match: A0A3F2S2E0_9STRA (UBX domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S2E0_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 7.720e-14
Identity = 36/77 (46.75%), Postives = 49/77 (63.64%), Query Frame = 1 
Query:    1 QVQFPDRVVLQATFASTEAVKDLLEVVQSSLGDHSQGRALELYVSPPRTVLKAASSLSDAGLVPAALVYVSWREVPP 231
            +VQFPDR V+QATF   E ++D+++ V   L    +G    LYV+PP   L    +L++  LVPAAL Y+SW EVPP
Sbjct:  330 RVQFPDRAVVQATFHPNETIRDVMDHVAECLDSLYKGNKFYLYVTPPTQKLAEGKTLAELNLVPAALTYLSWLEVPP 406
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13635.2928.1 vs. uniprot
Match: A0A0P1AS46_PLAHL (Predicted ubiquitin regulatory protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AS46_PLAHL)

HSP 1 Score: 71.6 bits (174), Expect = 9.630e-13
Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:    1 QVQFPDRVVLQATFASTEAVKDLLEVVQSSLGDHSQGRALELYVSPPRTVLKAASSLSDAGLVPAALVYVSWREVPPA 234
            +VQF D  VLQA+F  +E +KD++E V   L +        LYVSPP   L  + +L++  LVPAAL+Y+SW EVP A
Sbjct:  474 RVQFSDGAVLQASFQPSETIKDVMEHVTECLAEQYSASKFYLYVSPPTQKLNNSKTLTELNLVPAALIYLSWLEVPQA 551
[Close]
BLAST of mRNA_H-canaliculatus_F_contig13635.2928.1 vs. uniprot
Match: D0N3G4_PHYIT (UBX domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0N3G4_PHYIT)

HSP 1 Score: 69.3 bits (168), Expect = 6.210e-12
Identity = 33/78 (42.31%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:    1 QVQFPDRVVLQATFASTEAVKDLLEVVQSSLGDHSQGRALELYVSPPRTVLKAASSLSDAGLVPAALVYVSWREVPPA 234
            +VQFPDR V+QA+F   E ++D+++ V   L D  +     LYV+PP   L    +L++  LVPAAL Y+SW ++P A
Sbjct:  445 RVQFPDRAVVQASFHPNETIQDVMDHVAECLTDQCKPNRFYLYVTPPTQKLATTKTLAELNLVPAALTYLSWLDMPQA 522
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13635.2928.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LNR6_9PHAE3.190e-3382.50UBX domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2V2I9_9STRA6.370e-1649.38Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
H3GCB5_PHYRM1.370e-1546.34UBX domain-containing protein n=1 Tax=Phytophthora... [more]
A0A6A4ACN2_9STRA2.580e-1545.12UBX domain-containing protein n=4 Tax=Phytophthora... [more]
D7FT67_ECTSI4.020e-1595.00PUB domain-containing protein n=1 Tax=Ectocarpus s... [more]
G4YTH0_PHYSP4.760e-1546.25UBX domain-containing protein n=1 Tax=Phytophthora... [more]
A0A3M6VAR4_9STRA1.670e-1446.34UBX domain-containing protein n=1 Tax=Peronospora ... [more]
A0A3F2S2E0_9STRA7.720e-1446.75UBX domain-containing protein n=3 Tax=Phytophthora... [more]
A0A0P1AS46_PLAHL9.630e-1346.15Predicted ubiquitin regulatory protein n=1 Tax=Pla... [more]
D0N3G4_PHYIT6.210e-1242.31UBX domain-containing protein n=2 Tax=Phytophthora... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13635contigH-canaliculatus_F_contig13635:114..728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue9e-13
Seed eggNOG ortholog164328.Phyra73050
Preferred nameASPSCR1
KEGG koko:K15627
KEGG Pathwayko05202,map05202
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009653,GO:0009893,GO:0009898,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010604,GO:0010827,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0019222,GO:0019538,GO:0019898,GO:0019899,GO:0019941,GO:0022411,GO:0030154,GO:0030163,GO:0030433,GO:0030435,GO:0030659,GO:0031090,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032879,GO:0032984,GO:0033036,GO:0033500,GO:0033554,GO:0034613,GO:0034762,GO:0034976,GO:0035265,GO:0036503,GO:0040007,GO:0042221,GO:0042592,GO:0042593,GO:0042886,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043632,GO:0043933,GO:0043934,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045184,GO:0046324,GO:0046907,GO:0048471,GO:0048518,GO:0048522,GO:0048589,GO:0048646,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051117,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0097708,GO:0098552,GO:0098562,GO:1901564,GO:1901565,GO:1901575,GO:1901698
EggNOG free text desc.TUG ubiquitin-like domain
EggNOG OGs3QBTX@4776,KOG2699@1,KOG2699@2759
COG Functional cat.O
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons2
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929105.5872602-CDS-H-canaliculatus_F_contig13635:113..2301622929105.5872602-CDS-H-canaliculatus_F_contig13635:113..230Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13635 114..230 +
1696845680.9643645-CDS-H-canaliculatus_F_contig13635:113..2301696845680.9643645-CDS-H-canaliculatus_F_contig13635:113..230Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13635 114..230 +
1622929105.6028-CDS-H-canaliculatus_F_contig13635:599..7281622929105.6028-CDS-H-canaliculatus_F_contig13635:599..728Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13635 600..728 +
1696845680.9756866-CDS-H-canaliculatus_F_contig13635:599..7281696845680.9756866-CDS-H-canaliculatus_F_contig13635:599..728Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13635 600..728 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13635.2928.1prot_H-canaliculatus_F_contig13635.2928.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13635 114..728 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13635.2928.1

>prot_H-canaliculatus_F_contig13635.2928.1 ID=prot_H-canaliculatus_F_contig13635.2928.1|Name=mRNA_H-canaliculatus_F_contig13635.2928.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=82bp
QVQFPDRVVLQATFASTEAVKDLLEVVQSSLGDHSQGRALELYVSPPRTV
LKAASSLSDAGLVPAALVYVSWREVPPAGEQA
back to top

mRNA from alignment at H-canaliculatus_F_contig13635:114..728+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13635.2928.1 ID=mRNA_H-canaliculatus_F_contig13635.2928.1|Name=mRNA_H-canaliculatus_F_contig13635.2928.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=615bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13635:114..728+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGTTCAGTTCCCCGACCGCGTGGTGCTCCAAGCCACTTTCGCTTCCAC
CGAAGCCGTCAAGGACCTGCTGGAGGTTGTACAAAGCAGCCTCGGGGACC
ACAGCCAGGGACGAGCGGTGAGCGAGCGGCTCGCGACCCACAGGCCCGCT
GTAGCAGCCACGGGGTCCCGCAAGTAGGTACGGCCGTGGTGAGCACCAGT
CCACCCCATGTCGGCACATCGTGCTTTAAAATTTACCCCCCCCGAGGGTT
TGCGCGTCGAATCTTGAGCTTTCGCTCGCCCCCCCCCCCCTCCATATCAC
TGCCCCCCACAGCTGCCATAGCGTCTTTCACTCCACGCCTGAAACGAGAA
AAACATACTGGGAACAAGGTCTCGTGTCTTGAGTTTGCCGCCACCGGTAG
GTCCGCCCGCCGCATCGCTCTCTGATTTTCAGTCCCGCCGTTCCACTTCC
CCTGCGAATGAAAACAAAAACGTTTTTTGCGAGCAGCTGGAGCTTTACGT
GAGCCCTCCACGGACAGTCCTGAAGGCGGCCTCGTCCCTGTCGGACGCCG
GGCTCGTCCCCGCGGCGCTGGTCTACGTCTCCTGGAGAGAGGTTCCCCCG
GCGGGTGAGCAAGCG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13635:114..728+

>mRNA_H-canaliculatus_F_contig13635.2928.1 ID=mRNA_H-canaliculatus_F_contig13635.2928.1|Name=mRNA_H-canaliculatus_F_contig13635.2928.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=492bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13635:114..728+ (Hapterophycus canaliculatus Oshoro5f female)
CAGGTTCAGTTCCCCGACCGCGTGGTGCTCCAAGCCACTTTCGCTTCCAC
CGAAGCCGTCAAGGACCTGCTGGAGGTTGTACAAAGCAGCCTCGGGGACC
ACAGCCAGGGACGAGCGCAGGTTCAGTTCCCCGACCGCGTGGTGCTCCAA
GCCACTTTCGCTTCCACCGAAGCCGTCAAGGACCTGCTGGAGGTTGTACA
AAGCAGCCTCGGGGACCACAGCCAGGGACGAGCGCTGGAGCTTTACGTGA
GCCCTCCACGGACAGTCCTGAAGGCGGCCTCGTCCCTGTCGGACGCCGGG
CTCGTCCCCGCGGCGCTGGTCTACGTCTCCTGGAGAGAGGTTCCCCCGGC
GGGTGAGCAAGCGCTGGAGCTTTACGTGAGCCCTCCACGGACAGTCCTGA
AGGCGGCCTCGTCCCTGTCGGACGCCGGGCTCGTCCCCGCGGCGCTGGTC
TACGTCTCCTGGAGAGAGGTTCCCCCGGCGGGTGAGCAAGCG
back to top