mRNA_H-canaliculatus_F_contig13631.2927.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13631.2927.1
Unique NamemRNA_H-canaliculatus_F_contig13631.2927.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13631.2927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13631contigH-canaliculatus_F_contig13631:2310..2893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size584
Cds size300
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13631.2927.1prot_H-canaliculatus_F_contig13631.2927.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13631 2314..2613 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929105.4317744-UTR-H-canaliculatus_F_contig13631:2309..23131622929105.4317744-UTR-H-canaliculatus_F_contig13631:2309..2313Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13631 2310..2313 +
1696845680.9117684-UTR-H-canaliculatus_F_contig13631:2309..23131696845680.9117684-UTR-H-canaliculatus_F_contig13631:2309..2313Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13631 2310..2313 +
1622929105.4643407-UTR-H-canaliculatus_F_contig13631:2613..28931622929105.4643407-UTR-H-canaliculatus_F_contig13631:2613..2893Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13631 2614..2893 +
1696845680.933303-UTR-H-canaliculatus_F_contig13631:2613..28931696845680.933303-UTR-H-canaliculatus_F_contig13631:2613..2893Hapterophycus canaliculatus Oshoro5f femaleUTRH-canaliculatus_F_contig13631 2614..2893 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929105.4477768-CDS-H-canaliculatus_F_contig13631:2313..26131622929105.4477768-CDS-H-canaliculatus_F_contig13631:2313..2613Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13631 2314..2613 +
1696845680.9243443-CDS-H-canaliculatus_F_contig13631:2313..26131696845680.9243443-CDS-H-canaliculatus_F_contig13631:2313..2613Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13631 2314..2613 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13631.2927.1

>prot_H-canaliculatus_F_contig13631.2927.1 ID=prot_H-canaliculatus_F_contig13631.2927.1|Name=mRNA_H-canaliculatus_F_contig13631.2927.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=100bp
MTILMIPRSTHNSGKTNSKSNNESMSAVAATNAHEPACKTRLIMRCKAPT
TRLGNACTGMADKQTLPEGSLTGQVSNDTLLRTQLWVRSKARAARATVF*
back to top

mRNA from alignment at H-canaliculatus_F_contig13631:2310..2893+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13631.2927.1 ID=mRNA_H-canaliculatus_F_contig13631.2927.1|Name=mRNA_H-canaliculatus_F_contig13631.2927.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=584bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13631:2310..2893+ (Hapterophycus canaliculatus Oshoro5f female)
GACGATGACGATCCTTATGATACCACGATCCACCCACAACAGTGGCAAAA
CAAACAGCAAGAGTAACAACGAATCGATGTCGGCTGTTGCAGCGACCAAT
GCGCACGAACCAGCGTGCAAGACAAGGCTAATAATGCGATGTAAGGCACC
GACTACGCGGCTTGGAAACGCATGCACGGGCATGGCGGATAAGCAGACAT
TACCGGAAGGATCACTCACGGGACAGGTTTCAAACGATACGTTGTTGCGC
ACACAGCTGTGGGTGAGAAGCAAAGCAAGAGCAGCAAGAGCAACAGTCTT
TTAACCTGTCGTTCGAATCTACCTGCGCCTCCTCGAACAAACAATCTCCT
CCGTGGGCTTTTCACCGTCAATCCTTCTCCTAGAATCCACAAATCGCACC
CACGTATCCACGCACCTCCAAAGCCGCAACGCGCTCAAGCACCCAAGAAG
CACTCAACACCCATAACGTCGCGCTCAGAGCACCCAAAAGAGGCCCCGGC
GAACTACAACACCAGACTTCCGAGGCAGCGAAGGATCGAGCAGTCCAACC
CCCAAACCTACAAACACGACACCGCTTCTTCGGG
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13631:2310..2893+

>mRNA_H-canaliculatus_F_contig13631.2927.1 ID=mRNA_H-canaliculatus_F_contig13631.2927.1|Name=mRNA_H-canaliculatus_F_contig13631.2927.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=600bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13631:2310..2893+ (Hapterophycus canaliculatus Oshoro5f female)
ATGACGATCCTTATGATACCACGATCCACCCACAACAGTGGCAAAACAAA
CAGCAAGAGTAACAACGAATCGATGTCGGCTGTTGCAGCGACCAATGCGC
ACGAACCAGCGTGCAAGACAAGGCTAATAATGCGATGTAAGGCACCGACT
ACGCGGCTTGGAAACGCATGCACGGGCATGGCGGATAAGCAGACATTACC
GGAAGGATCACTCACGGGACAGGTTTCAAACGATACGTTGTTGCGCACAC
AGCTGTGGGTGAGAAGCAAAGCAAGAGCAGCAAGAGCAACAGTCTTTTAA
ATGACGATCCTTATGATACCACGATCCACCCACAACAGTGGCAAAACAAA
CAGCAAGAGTAACAACGAATCGATGTCGGCTGTTGCAGCGACCAATGCGC
ACGAACCAGCGTGCAAGACAAGGCTAATAATGCGATGTAAGGCACCGACT
ACGCGGCTTGGAAACGCATGCACGGGCATGGCGGATAAGCAGACATTACC
GGAAGGATCACTCACGGGACAGGTTTCAAACGATACGTTGTTGCGCACAC
AGCTGTGGGTGAGAAGCAAAGCAAGAGCAGCAAGAGCAACAGTCTTTTAA
back to top