mRNA_H-canaliculatus_F_contig13631.2926.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig13631.2926.1
Unique NamemRNA_H-canaliculatus_F_contig13631.2926.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig13631.2926.1 vs. uniprot
Match: A0A6H5LCE7_9PHAE (V-ATPase_H_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCE7_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 5.780e-27
Identity = 52/53 (98.11%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 VLQRNSRDLSTFERYSQEVMSGQLKWGPVHTEKFWREQARKFEADEFFILKQV 159
            VLQRNSRDLSTFERYSQEVMSGQLKWGPVHTEKFWREQARKFEADEFFILKQ+
Sbjct:  396 VLQRNSRDLSTFERYSQEVMSGQLKWGPVHTEKFWREQARKFEADEFFILKQL 448
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BLAST of mRNA_H-canaliculatus_F_contig13631.2926.1 vs. uniprot
Match: D7FH73_ECTSI (V-ATPase_H_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH73_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 2.680e-16
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:   55 VMSGQLKWGPVHTEKFWREQARKFEADEFFILKQV 159
            VMSG LKWGPVHTEKFWREQARKFEADEFFILKQ+
Sbjct:    3 VMSGHLKWGPVHTEKFWREQARKFEADEFFILKQL 37
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BLAST of mRNA_H-canaliculatus_F_contig13631.2926.1 vs. uniprot
Match: I2CP76_NANGC (V-type proton ATPase subunit H n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP76_NANGC)

HSP 1 Score: 74.7 bits (182), Expect = 2.270e-14
Identity = 33/53 (62.26%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    1 VLQRNSRDLSTFERYSQEVMSGQLKWGPVHTEKFWREQARKFEADEFFILKQV 159
             LQ++SR+LSTFERY  EV SGQL+WG VH+EKFW+E  R  EAD+F +LK +
Sbjct:  318 ALQKDSRELSTFERYIAEVASGQLRWGIVHSEKFWKENVRSLEADDFKVLKSL 370
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BLAST of mRNA_H-canaliculatus_F_contig13631.2926.1 vs. uniprot
Match: A0A835Z9Q6_9STRA (V-type H+-transporting ATPase 54 kd subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Q6_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.110e-13
Identity = 32/50 (64.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:    4 LQRNSRDLSTFERYSQEVMSGQLKWGPVHTEKFWREQARKFEADEFFILK 153
            LQRN RDL+T E Y+QEV SG+L+WG VHTE+FWRE AR  EAD+F +++
Sbjct:  334 LQRNYRDLTTLEAYTQEVRSGRLRWGVVHTERFWRENARATEADDFALIR 383
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BLAST of mRNA_H-canaliculatus_F_contig13631.2926.1 vs. uniprot
Match: A0A7S2V6V1_9STRA (V-type proton ATPase subunit H n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6V1_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.360e-12
Identity = 32/52 (61.54%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    4 LQRNSRDLSTFERYSQEVMSGQLKWGPVHTEKFWREQARKFEADEFFILKQV 159
            L  +  +LSTFE Y QEV SGQLKWG  HTEKFWR   R  EAD+F +LKQ+
Sbjct:  337 LMSDYHELSTFEMYQQEVRSGQLKWGLCHTEKFWRNNVRSMEADDFALLKQL 388
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BLAST of mRNA_H-canaliculatus_F_contig13631.2926.1 vs. uniprot
Match: A0A7S2H8Z8_9STRA (V-type proton ATPase subunit H n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H8Z8_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.460e-12
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 1 
Query:    1 VLQRNSRDLSTFERYSQEVMSGQLKWGPVHTEKFWREQARKFEADEFFILKQV 159
             L  N R+LSTFER++ EV S QLKWG VH EKFWRE A++ E +EF +LK++
Sbjct:  324 ALMENYRELSTFERWAAEVKSKQLKWGLVHQEKFWRENAKELEVNEFALLKEL 376
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BLAST of mRNA_H-canaliculatus_F_contig13631.2926.1 vs. uniprot
Match: A0A0V0QS56_PSEPJ (V-type proton ATPase subunit H n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QS56_PSEPJ)

HSP 1 Score: 67.0 bits (162), Expect = 1.210e-11
Identity = 29/53 (54.72%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 VLQRNSRDLSTFERYSQEVMSGQLKWGPVHTEKFWREQARKFEADEFFILKQV 159
            VL+ N + LS+FE+Y +E+ S  L W PVHTEKFWRE  RKFE D+F ++K +
Sbjct:  323 VLEANLKILSSFEKYQKEIHSRHLDWSPVHTEKFWRENIRKFEDDDFKLIKML 375
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BLAST of mRNA_H-canaliculatus_F_contig13631.2926.1 vs. uniprot
Match: A0C6M7_PARTE (V-type proton ATPase subunit H n=2 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0C6M7_PARTE)

HSP 1 Score: 62.8 bits (151), Expect = 3.780e-10
Identity = 23/53 (43.40%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 VLQRNSRDLSTFERYSQEVMSGQLKWGPVHTEKFWREQARKFEADEFFILKQV 159
            +L++N + L++FE+Y +E+ +  L W PVHTEKFW+E  +KFE ++F +++Q+
Sbjct:  315 ILEKNMKILTSFEKYVKELNAQNLTWSPVHTEKFWKENVKKFEENDFLLIRQL 367
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BLAST of mRNA_H-canaliculatus_F_contig13631.2926.1 vs. uniprot
Match: F0XWY7_AURAN (V-ATPase_H_C domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWY7_AURAN)

HSP 1 Score: 59.7 bits (143), Expect = 3.870e-10
Identity = 26/42 (61.90%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:   28 STFERYSQEVMSGQLKWGPVHTEKFWREQARKFEADEFFILK 153
            +T ERY+ EV SG L WG VHT+KFWRE AR  EAD+F ++K
Sbjct:    1 TTLERYAAEVRSGDLAWGLVHTDKFWRENARAAEADDFALIK 42
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BLAST of mRNA_H-canaliculatus_F_contig13631.2926.1 vs. uniprot
Match: A0BYU7_PARTE (V-type proton ATPase subunit H n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0BYU7_PARTE)

HSP 1 Score: 61.2 bits (147), Expect = 1.320e-9
Identity = 22/53 (41.51%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    1 VLQRNSRDLSTFERYSQEVMSGQLKWGPVHTEKFWREQARKFEADEFFILKQV 159
            +L++N + L++FE+Y +E+ +  L W PVHTEKFW+E  +KFE ++F +++++
Sbjct:  315 ILEKNMKILTSFEKYVKELNAQNLTWSPVHTEKFWKENVKKFEENDFLLIRKL 367
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13631.2926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LCE7_9PHAE5.780e-2798.11V-ATPase_H_C domain-containing protein n=1 Tax=Ect... [more]
D7FH73_ECTSI2.680e-1694.29V-ATPase_H_C domain-containing protein n=1 Tax=Ect... [more]
I2CP76_NANGC2.270e-1462.26V-type proton ATPase subunit H n=1 Tax=Nannochloro... [more]
A0A835Z9Q6_9STRA1.110e-1364.00V-type H+-transporting ATPase 54 kd subunit n=1 Ta... [more]
A0A7S2V6V1_9STRA1.360e-1261.54V-type proton ATPase subunit H n=1 Tax=Fibrocapsa ... [more]
A0A7S2H8Z8_9STRA3.460e-1258.49V-type proton ATPase subunit H n=1 Tax=Dictyocha s... [more]
A0A0V0QS56_PSEPJ1.210e-1154.72V-type proton ATPase subunit H n=1 Tax=Pseudocohni... [more]
A0C6M7_PARTE3.780e-1043.40V-type proton ATPase subunit H n=2 Tax=Paramecium ... [more]
F0XWY7_AURAN3.870e-1061.90V-ATPase_H_C domain-containing protein (Fragment) ... [more]
A0BYU7_PARTE1.320e-941.51V-type proton ATPase subunit H n=1 Tax=Paramecium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig13631contigH-canaliculatus_F_contig13631:306..1300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue6.5e-12
Seed eggNOG ortholog2880.D7FH73
Preferred nameATP6V1H
KEGG koko:K02144
KEGG TC3.A.2.2
KEGG Pathwayko00190,ko01100,ko04142,ko04145,ko04150,ko04721,ko05110,ko05120,ko05152,ko05323,map00190,map01100,map04142,map04145,map04150,map04721,map05110,map05120,map05152,map05323
KEGG ModuleM00160
GOsGO:0000041,GO:0000221,GO:0000322,GO:0000323,GO:0000324,GO:0000325,GO:0000329,GO:0000331,GO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005773,GO:0005774,GO:0005794,GO:0005829,GO:0005886,GO:0006403,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006885,GO:0006897,GO:0007035,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007568,GO:0008104,GO:0008150,GO:0008286,GO:0008324,GO:0008340,GO:0009507,GO:0009536,GO:0009719,GO:0009725,GO:0009894,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010506,GO:0012505,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015682,GO:0015833,GO:0015931,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016032,GO:0016192,GO:0016241,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019725,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023052,GO:0030001,GO:0030003,GO:0030004,GO:0030234,GO:0030641,GO:0031090,GO:0031164,GO:0031224,GO:0031323,GO:0031329,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0033036,GO:0033176,GO:0033178,GO:0033180,GO:0033181,GO:0033227,GO:0033572,GO:0034220,GO:0036442,GO:0042221,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043492,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044769,GO:0045184,GO:0045851,GO:0046961,GO:0048856,GO:0048878,GO:0050657,GO:0050658,GO:0050690,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050896,GO:0051179,GO:0051234,GO:0051236,GO:0051452,GO:0051453,GO:0051704,GO:0051716,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071944,GO:0072512,GO:0090662,GO:0097708,GO:0098588,GO:0098655,GO:0098657,GO:0098660,GO:0098662,GO:0098771,GO:0098772,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099131,GO:0099132,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902600
EggNOG free text desc.proton-transporting ATPase activity, rotational mechanism
EggNOG OGsCOG5231@1,KOG2759@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929105.51087-CDS-H-canaliculatus_F_contig13631:305..4101622929105.51087-CDS-H-canaliculatus_F_contig13631:305..410Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13631 306..410 -
1696845680.943331-CDS-H-canaliculatus_F_contig13631:305..4101696845680.943331-CDS-H-canaliculatus_F_contig13631:305..410Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13631 306..410 -
1622929105.5271678-CDS-H-canaliculatus_F_contig13631:1246..13001622929105.5271678-CDS-H-canaliculatus_F_contig13631:1246..1300Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13631 1247..1300 -
1696845680.9546986-CDS-H-canaliculatus_F_contig13631:1246..13001696845680.9546986-CDS-H-canaliculatus_F_contig13631:1246..1300Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig13631 1247..1300 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig13631.2926.1prot_H-canaliculatus_F_contig13631.2926.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig13631 306..1300 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig13631.2926.1

>prot_H-canaliculatus_F_contig13631.2926.1 ID=prot_H-canaliculatus_F_contig13631.2926.1|Name=mRNA_H-canaliculatus_F_contig13631.2926.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=53bp
VLQRNSRDLSTFERYSQEVMSGQLKWGPVHTEKFWREQARKFEADEFFIL
KQV
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mRNA from alignment at H-canaliculatus_F_contig13631:306..1300-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig13631.2926.1 ID=mRNA_H-canaliculatus_F_contig13631.2926.1|Name=mRNA_H-canaliculatus_F_contig13631.2926.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=995bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13631:306..1300- (Hapterophycus canaliculatus Oshoro5f female)
GTTCTCCAGCGCAACTCCAGAGACCTGTCGACGTTCGAACGCTACTCCCA
GGAGGTGAGCAGCCAAGCGCCTGCCACCCCTCTTTGGATTGAAATAATTC
CCGTCTCTTGCGTTTTGCCTCGCTGTTTTTCGTTTCGCTTGTGTTCTCTT
CTTGCCCTAGGTGATTTATCTGACCCGGCAGATGAAGCGCTGAGGTGGGG
CAAAGTCGACAAACAAGCGAAATGAAAAGGAGCACTTTTTGTAGTGTGAG
CTTCCCAGCTTTTTCTGCTCATGCTTCTATCCCAACCATTCACACAGTGA
AAACTCATTGTTTGGAACTCAACAGAACCTCGAGATACGTCTTACACGAC
GTTACTCAGGAGGGGTTCCTACGGTGTTGTTCTGTCTTTCTTGAAAGATT
CACGGTCCTGATGTGTTCCTGACCCATTCGGTTGGAGCACGTTCCTGTTC
GGACCTGGTGCAGTCACAGCAACAGCGTGTATTGTGGTGCATGGATGTAC
GGTGACCTCTTGCCGAATGTGTTGTTGTACTTCTGTACCCGGCTGGTTGG
CCTCGATCGGCACATCGAGATCCTACGAATGTTTGACATGCTCTCTGCTT
TTTGGGTGTTCTGCATGTTCTGTGTCCTCTTGTTCTTTGTCGTCGCCGTC
GTCGCCGTCTTATATGATCGTCGCTTCCACCGCCCATTTCGCTCAAATGT
ACTTCGAACATCACCCCTAGCTACGAGAGCATCCCCGGGAAGAGTATCCC
AAACGCGTGTTCATGCACCCATACACCCTTCTCGATTTCAATTCCAGGGC
AATCCCCCTGTGCTCGGCTGTAATCGACGCTCTCGATGCGTTTGCCTCCG
TGCGTCATTCCCTCTTGCTTTCGTTCTCGTGTTGTCGCAGGTTATGTCCG
GCCAGTTGAAGTGGGGACCCGTGCACACGGAGAAGTTCTGGAGGGAGCAG
GCTAGGAAGTTCGAGGCCGACGAGTTCTTCATCCTGAAGCAGGTT
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13631:306..1300-

>mRNA_H-canaliculatus_F_contig13631.2926.1 ID=mRNA_H-canaliculatus_F_contig13631.2926.1|Name=mRNA_H-canaliculatus_F_contig13631.2926.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=318bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13631:306..1300- (Hapterophycus canaliculatus Oshoro5f female)
GTTCTCCAGCGCAACTCCAGAGACCTGTCGACGTTCGAACGCTACTCCCA
GGAGGTTCTCCAGCGCAACTCCAGAGACCTGTCGACGTTCGAACGCTACT
CCCAGGAGGTTATGTCCGGCCAGTTGAAGTGGGGACCCGTGCACACGGAG
AAGTTCTGGAGGGAGCAGGCTAGGAAGTTCGAGGCCGACGAGTTCTTCAT
CCTGAAGCAGGTTGTTATGTCCGGCCAGTTGAAGTGGGGACCCGTGCACA
CGGAGAAGTTCTGGAGGGAGCAGGCTAGGAAGTTCGAGGCCGACGAGTTC
TTCATCCTGAAGCAGGTT
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