mRNA_H-canaliculatus_F_contig1361.2913.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig1361.2913.1 vs. uniprot
Match: A0A6H5L0Q2_9PHAE (VASt domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Q2_9PHAE) HSP 1 Score: 124 bits (310), Expect = 2.780e-26 Identity = 75/103 (72.82%), Postives = 81/103 (78.64%), Query Frame = 2
Query: 143 GEQ---SPRRSRSPSSETSFRTPPPSGFMERVQARV-RSD---AEDREDIVHSIFGEVGTPVEDFSCAVESRILLHGRMYVTSTFVCFYSNLFGFEKIIKIPF 430
GEQ SPR S + S +S + P MERVQA+V RSD A+ REDIV SIFGEVG PVEDFSCAVESRILLHGRMYVT+TFVCFYSNLFGFEKIIKIPF
Sbjct: 14 GEQRDLSPRGSPADSDCSSGKLTP--SIMERVQAKVVRSDSATADYREDIVRSIFGEVGKPVEDFSCAVESRILLHGRMYVTNTFVCFYSNLFGFEKIIKIPF 114
BLAST of mRNA_H-canaliculatus_F_contig1361.2913.1 vs. uniprot
Match: D7FKF6_ECTSI (VASt domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKF6_ECTSI) HSP 1 Score: 122 bits (307), Expect = 6.060e-26 Identity = 65/75 (86.67%), Postives = 68/75 (90.67%), Query Frame = 2
Query: 218 MERVQARV-RSD---AEDREDIVHSIFGEVGTPVEDFSCAVESRILLHGRMYVTSTFVCFYSNLFGFEKIIKIPF 430
MERVQA+V RSD A+ REDIV SIFGEVG PVEDFSCAVESRILLHGRMYVT+TFVCFYSNLFGFEKIIKIPF
Sbjct: 1 MERVQAKVVRSDSATADYREDIVRSIFGEVGKPVEDFSCAVESRILLHGRMYVTNTFVCFYSNLFGFEKIIKIPF 75
BLAST of mRNA_H-canaliculatus_F_contig1361.2913.1 vs. uniprot
Match: A0A7S2STC3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STC3_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 3.800e-16 Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = 2
Query: 260 REDIVHSIFGEVGTPVEDFSCAVESRILLHGRMYVTSTFVCFYSNLFGFEKIIKIPF 430
R +IV +IFG+VGT +DFSCAVE +ILLHGRMYVT F+CFYSNLFGFEK IKIP+
Sbjct: 27 RNEIVRTIFGDVGTIKKDFSCAVERKILLHGRMYVTDKFICFYSNLFGFEKKIKIPY 83
BLAST of mRNA_H-canaliculatus_F_contig1361.2913.1 vs. uniprot
Match: A0A8J2ST97_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2ST97_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 7.330e-16 Identity = 44/85 (51.76%), Postives = 58/85 (68.24%), Query Frame = 2
Query: 188 SFRTPPPSGFMERVQARVRSDAED----REDIVHSIFGEVGTPVEDFSCAVESRILLHGRMYVTSTFVCFYSNLFGFEKIIKIPF 430
S +TP + ++ D +D R++IV +IFG+VG DFSCA+E +ILLHGR+YVT F+CFYSNLFGFEK IKIP+
Sbjct: 18 SIKTPACRASSKEIEIDTEEDKQDPAAWRDEIVRTIFGDVGAIRRDFSCAIERKILLHGRLYVTERFICFYSNLFGFEKKIKIPY 102
BLAST of mRNA_H-canaliculatus_F_contig1361.2913.1 vs. uniprot
Match: A0A7S3NLX8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NLX8_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 7.190e-15 Identity = 39/57 (68.42%), Postives = 48/57 (84.21%), Query Frame = 2
Query: 260 REDIVHSIFGEVGTPVEDFSCAVESRILLHGRMYVTSTFVCFYSNLFGFEKIIKIPF 430
R++IV +IFG+VG DFSCA+E +ILLHGR+YVT F+CFYSNLFGFEK IKIP+
Sbjct: 150 RDEIVRTIFGDVGAIRRDFSCAIERKILLHGRLYVTERFICFYSNLFGFEKKIKIPY 206
BLAST of mRNA_H-canaliculatus_F_contig1361.2913.1 vs. uniprot
Match: W7TDU9_9STRA (Gram domain-containing protein 1a n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TDU9_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 2.540e-13 Identity = 41/61 (67.21%), Postives = 49/61 (80.33%), Query Frame = 2
Query: 260 REDIVHSIFGE-VGTPVEDFSCAVESRILLHGRMYVTSTFVCFYSNLFGFEKIIKIPFWRV 439
R++IV IFGE +G +D SCAVES+ILLHGR+Y+T FVCFYSN FGFEK IKIPF +V
Sbjct: 101 RDEIVRQIFGENLGCIRDDASCAVESKILLHGRIYITDKFVCFYSNFFGFEKKIKIPFSQV 161
BLAST of mRNA_H-canaliculatus_F_contig1361.2913.1 vs. uniprot
Match: A0A7S1U683_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U683_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 1.450e-12 Identity = 32/57 (56.14%), Postives = 43/57 (75.44%), Query Frame = 2
Query: 260 REDIVHSIFGEVGTPVEDFSCAVESRILLHGRMYVTSTFVCFYSNLFGFEKIIKIPF 430
R ++V IFG G + DFSC+VES++ LHG MYVT+ F+CFYSN FG+EK I +P+
Sbjct: 26 RREVVKLIFGNAGLILSDFSCSVESKMTLHGHMYVTTRFICFYSNFFGYEKKILLPY 82
BLAST of mRNA_H-canaliculatus_F_contig1361.2913.1 vs. uniprot
Match: F0Y4G3_AURAN (GRAM domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4G3_AURAN) HSP 1 Score: 73.2 bits (178), Expect = 1.770e-12 Identity = 31/40 (77.50%), Postives = 36/40 (90.00%), Query Frame = 2
Query: 311 DFSCAVESRILLHGRMYVTSTFVCFYSNLFGFEKIIKIPF 430
DFSCA+E +ILLHGR+YVT F+CFYSNLFGFEK IKIP+
Sbjct: 2 DFSCAIERKILLHGRLYVTERFICFYSNLFGFEKKIKIPY 41
BLAST of mRNA_H-canaliculatus_F_contig1361.2913.1 vs. uniprot
Match: A0A482S830_9ARCH (GRAM domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S830_9ARCH) HSP 1 Score: 70.1 bits (170), Expect = 1.440e-11 Identity = 29/40 (72.50%), Postives = 36/40 (90.00%), Query Frame = 2
Query: 311 DFSCAVESRILLHGRMYVTSTFVCFYSNLFGFEKIIKIPF 430
DFSCAVES +LLHGRMY+++ F+CFYSNLFG EK I+IP+
Sbjct: 6 DFSCAVESTVLLHGRMYISTRFICFYSNLFGLEKKIRIPY 45
BLAST of mRNA_H-canaliculatus_F_contig1361.2913.1 vs. uniprot
Match: A0A836CDE2_9STRA (GRAM domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDE2_9STRA) HSP 1 Score: 68.9 bits (167), Expect = 4.540e-11 Identity = 29/44 (65.91%), Postives = 38/44 (86.36%), Query Frame = 2
Query: 308 EDFSCAVESRILLHGRMYVTSTFVCFYSNLFGFEKIIKIPFWRV 439
+DFSCAV+SR+L+HGR+Y+T + FYSN+FGFEKII+IPF V
Sbjct: 1 QDFSCAVQSRVLMHGRLYITPGHLLFYSNIFGFEKIIRIPFTHV 44 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1361.2913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig1361.2913.1 >prot_H-canaliculatus_F_contig1361.2913.1 ID=prot_H-canaliculatus_F_contig1361.2913.1|Name=mRNA_H-canaliculatus_F_contig1361.2913.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=131bp MILEQVDTWQECARALNKKKTVWLCLSTKRNRKTHVGSPSTFCKCTMQRQback to top mRNA from alignment at H-canaliculatus_F_contig1361:23931..26703+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig1361.2913.1 ID=mRNA_H-canaliculatus_F_contig1361.2913.1|Name=mRNA_H-canaliculatus_F_contig1361.2913.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2773bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1361:23931..26703+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1361:23931..26703+ >mRNA_H-canaliculatus_F_contig1361.2913.1 ID=mRNA_H-canaliculatus_F_contig1361.2913.1|Name=mRNA_H-canaliculatus_F_contig1361.2913.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=786bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1361:23931..26703+ (Hapterophycus canaliculatus Oshoro5f female)back to top |