mRNA_H-canaliculatus_F_contig1361.2910.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1361.2910.1
Unique NamemRNA_H-canaliculatus_F_contig1361.2910.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1361.2910.1 vs. uniprot
Match: D7FKG0_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG0_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 1.100e-20
Identity = 44/74 (59.46%), Postives = 54/74 (72.97%), Query Frame = 2 
Query:  179 ASASAVEYRIDPSKESGSGGDFEVDCLLLVEPGDSCYLMSGDHKHDGLTRVHGTADKRITITGDSDACIKGSNT 400
            A A+A  Y I P      G D+E  CL +V+PGD+CY +SGDHK DG+T+VHGT   RIT+TGDSDAC+KGSNT
Sbjct:    6 APATATTYEISP------GDDYEETCLKMVQPGDTCYFLSGDHKFDGMTQVHGTEKNRITLTGDSDACLKGSNT 73
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BLAST of mRNA_H-canaliculatus_F_contig1361.2910.1 vs. uniprot
Match: A0A6H5KRG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRG5_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 9.580e-20
Identity = 41/57 (71.93%), Postives = 46/57 (80.70%), Query Frame = 2 
Query:  230 SGGDFEVDCLLLVEPGDSCYLMSGDHKHDGLTRVHGTADKRITITGDSDACIKGSNT 400
            +G DFE  CL +VEPGD+C+L  GD+ HDGLT  HGT DKRITITGD DACIKGSNT
Sbjct:   10 AGDDFEASCLKVVEPGDTCHLEKGDYVHDGLTVTHGTEDKRITITGDPDACIKGSNT 66
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BLAST of mRNA_H-canaliculatus_F_contig1361.2910.1 vs. uniprot
Match: D7FRK8_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRK8_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 1.310e-19
Identity = 48/76 (63.16%), Postives = 53/76 (69.74%), Query Frame = 2 
Query:  173 LAASASAVEYRIDPSKESGSGGDFEVDCLLLVEPGDSCYLMSGDHKHDGLTRVHGTADKRITITGDSDACIKGSNT 400
            LAASA A E  +       +G DFE  CL +VEPGDSCYL  GD+ HDG+T  HGTAD  ITITGDS ACIKGSNT
Sbjct:   10 LAASAKAREIAV------AAGEDFEAVCLKVVEPGDSCYLAKGDYYHDGITSTHGTADAPITITGDSAACIKGSNT 79
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BLAST of mRNA_H-canaliculatus_F_contig1361.2910.1 vs. uniprot
Match: A0A6H5KWV6_9PHAE (F5/8 type C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWV6_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 3.460e-17
Identity = 44/76 (57.89%), Postives = 52/76 (68.42%), Query Frame = 2 
Query:  173 LAASASAVEYRIDPSKESGSGGDFEVDCLLLVEPGDSCYLMSGDHKHDGLTRVHGTADKRITITGDSDACIKGSNT 400
            LAASA A   +++      +G DFE  CL +VEPGD C L  GD+ HDG+T VHGT D  ITITG S+ACIKGSNT
Sbjct:    5 LAASAEAKTIQVE------AGEDFEAVCLKVVEPGDKCNLAKGDYYHDGITAVHGTEDAPITITGHSEACIKGSNT 74
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1361.2910.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FKG0_ECTSI1.100e-2059.46FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5KRG5_9PHAE9.580e-2071.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRK8_ECTSI1.310e-1963.16FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5KWV6_9PHAE3.460e-1757.89F5/8 type C domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1361contigH-canaliculatus_F_contig1361:266..2730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size405
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929103.2600725-CDS-H-canaliculatus_F_contig1361:267..4971622929103.2600725-CDS-H-canaliculatus_F_contig1361:267..497Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1361 268..497 -
1696845679.9241774-CDS-H-canaliculatus_F_contig1361:267..4971696845679.9241774-CDS-H-canaliculatus_F_contig1361:267..497Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1361 268..497 -
1622929103.2758117-CDS-H-canaliculatus_F_contig1361:2558..27301622929103.2758117-CDS-H-canaliculatus_F_contig1361:2558..2730Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1361 2559..2730 -
1696845679.9325883-CDS-H-canaliculatus_F_contig1361:2558..27301696845679.9325883-CDS-H-canaliculatus_F_contig1361:2558..2730Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1361 2559..2730 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1361.2910.1prot_H-canaliculatus_F_contig1361.2910.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1361 268..2730 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1361.2910.1

>prot_H-canaliculatus_F_contig1361.2910.1 ID=prot_H-canaliculatus_F_contig1361.2910.1|Name=mRNA_H-canaliculatus_F_contig1361.2910.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=134bp
TDSLHTLSILATPTEDQQDTLTLCPQPLQPDCVRENFLVTPQQLKDHEEL
RGARGGFARRFGIGCRVQDRPIERVRLGGRLRGGLPAACGARRLLLPHEW
RPQARWTHPRPRDGRQAHHHHRRQRRVHQGQQHA
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mRNA from alignment at H-canaliculatus_F_contig1361:266..2730-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1361.2910.1 ID=mRNA_H-canaliculatus_F_contig1361.2910.1|Name=mRNA_H-canaliculatus_F_contig1361.2910.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=2465bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1361:266..2730- (Hapterophycus canaliculatus Oshoro5f female)
ACTGATTCTCTCCACACGTTGAGCATACTCGCGACGCCGACAGAAGATCA
GCAGGATACCCTGACTCTGTGTCCGCAGCCACTCCAGCCGGACTGCGTGC
GTGAGAACTTCCTCGTCACGCCCCAACAGCTCAAGGATCATGAAGAGCTT
CGCGGCGCTCGCGGCGGTTTCGGTAAGTTCCAGGTGGTTGCTTGTTACCC
GCCTCGCTCACCCTGTCTCTCCCTCTCACAACCTTGTAAATCTTCCATCC
CGTCACCTTTCGGGTCTCTACTTCCGCGCCGCGGTCGTCTCCTTCACAGA
GACGTGACACACTGCTGTACGGCTACTGGGTGGCCATGGACCCGTGATTG
TGACTCGTTGTTGTGCCCTGCTCTACACAGTTTTGAAAGATTCTCGGATG
TGTAAAAGTAGATCTGTAGAAGTCAACCGCTGTTTTCTTCTGTGATGGGT
GAGAGGATCTCGCCAAAAAATTATCGGTACAGATTCGGGAGAGGTGACTC
TCGTCACTGTTGAGCGTACAAAGCCGTCGAGAAAAGCTGACACGTAGGAT
CTGGGTCGCAGATGGATAGACTCTCAGCAAGCGTGAGGGACTTTCAAATG
GGTGCGATACCACGTTCGACCTCCCAGTTGAGATCCTTCAAACGAAAAAT
TGGGGATCTCCCCGGGCAAAATCCGTGGACCCGGGCCTCTTGCCGCACTG
TCACCGAACGAAGAATGTTTACAAGACGTGAAATGTCTAGCGTTTGCGAC
ACAAGCGGCTGCAGAGAGAAGGCTTCACCGCGCTGAAATCGTTGCGAATG
GATCCATGGGGATGAAGTCAAGTTGATTAGGTCGTACAAGTTTGATGTGT
CATTATTGTGGCGTCCTCGGACACTCTACGAATACTTGTCTTTGTTAGCG
CACTTTTCGACAAGCTGCTGACCGCAACAAGCAGTGGGTCCGACCAAGAT
TGCAGCCACGATCTCCACTGAAGATGAAGCTCCTAGGTTGTTTTACACAT
TGGAACCCTGGCTGTGTGAAAGCAATATCCTTCCGGGAATCAACCTCCTG
TTCGACTCTCCTAGTAGTGGCCCCATTCCTCCGAAGCTGTAGGTTTAGGC
GGCGAACTTGCCGCAGTCTCCTCCTTCACAGCGAGGCGTCGTCGCCCTTT
TAATCAGTGTTTGGCTTTATTGTCCGTTCGACATTTCGCTCCCGTCGAGT
TCATTTCTTGGTTTACTACCTTTCGGAACAGAAAGAGCCCATCTTGAGCC
TTGCCAGCACGCCAGATGAGCTTCGATTCACAGCGCTCAACGAATACGAG
ATGACATACAGCCGGTCCGGGTGGGGGACCGTGACGAACGCCACACATAG
ACAGACGCTCGCCTGGAAGTGCTGCCCTTGGGCTCTCGAAGTTCAAACTA
CCGTCGAGAGCGTAAATGAAATCGAGATGAGTTATCAATCATGCGCGGCT
CCAGAAATATTCTGCAAGCGTTGTGCATCGATCCCGCGTCGACTGTGCCT
GATTCGCCTGCTATTTCATCGAGGAATTTTCCCACGAGAAAGCATCCAGC
AGGATGAGCAGACCCTTCAGGTACGTCTCACACCTGGATGGGTGCCACGC
GTGTTGGGCGGGCGGAAACAGTTCTGTTTTCACACCTCTTGGATCTTGGT
TGTCTCAGCTCCGTTGTTAAGATGTTCATCCTACACGTCTATCCTCTCTT
CCTGTTAACGAACAGACCATCGACGTCACCTGAGATAGTAGCCGAACGTG
TTCTGACACGGAAAAGTCCCGGTCTTGATCGAAATTACTGTGAGTGGCGG
CTTTCATGTCCTCTCTTCTTCAGGAGATCCAGGAGACGGGCTTCAAACAT
GCAGCGCTCAACTAACCCGGGGTCCATCCCAAAATATTTTCATAAGGATG
CCCGATTTGGGGGTGGGACGGTGTTTCCATTGCGACTCCTTTTTTTACCC
TGGCCGATTGTAAAAAAATATCGTATACCCCCATTTTTCATGTGTTTCGA
AGTGGTATCAAAGAAAAATAAAGTGCGCGTAGTTGCTGGGTGCCGCCCGG
CCTGCAGATGCCGCCCTCGCCATTCTATCCGACACAGTAAGGATTTCAAG
CAACACCCGGTTCTGCGCACGAGGTCCGTGCTAATCTTGACTTGTTCAGC
GTGCAACCTAACCTTTCAAGTGTCTATCGCCAATCCTTACCCGTCTGTCG
CTTTTTCGCGCCCCTATGCTCTATGGACCGCAGCTCGCCGCTTCGGCATC
GGCTGTAGAGTACAGGATCGACCCATCGAAAGAGTCCGGCTCGGGGGGAG
ACTTCGAGGTGGACTGCCTGCTGCTTGTGGAGCCCGGAGACTCCTGCTAC
CTCATGAGTGGCGACCACAAGCACGATGGACTCACCCGCGTCCACGGGAC
GGCAGACAAGCGCATCACCATCACCGGCGACAGCGACGCGTGCATCAAGG
GCAGCAACACGCAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1361:266..2730-

>mRNA_H-canaliculatus_F_contig1361.2910.1 ID=mRNA_H-canaliculatus_F_contig1361.2910.1|Name=mRNA_H-canaliculatus_F_contig1361.2910.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=804bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1361:266..2730- (Hapterophycus canaliculatus Oshoro5f female)
ACTGATTCTCTCCACACGTTGAGCATACTCGCGACGCCGACAGAAGATCA
GCAGGATACCCTGACTCTGTGTCCGCAGCCACTCCAGCCGGACTGCGTGC
GTGAGAACTTCCTCGTCACGCCCCAACAGCTCAAGGATCATGAAGAGCTT
CGCGGCGCTCGCGGCGGTTTCGACTGATTCTCTCCACACGTTGAGCATAC
TCGCGACGCCGACAGAAGATCAGCAGGATACCCTGACTCTGTGTCCGCAG
CCACTCCAGCCGGACTGCGTGCGTGAGAACTTCCTCGTCACGCCCCAACA
GCTCAAGGATCATGAAGAGCTTCGCGGCGCTCGCGGCGGTTTCGCTCGCC
GCTTCGGCATCGGCTGTAGAGTACAGGATCGACCCATCGAAAGAGTCCGG
CTCGGGGGGAGACTTCGAGGTGGACTGCCTGCTGCTTGTGGAGCCCGGAG
ACTCCTGCTACCTCATGAGTGGCGACCACAAGCACGATGGACTCACCCGC
GTCCACGGGACGGCAGACAAGCGCATCACCATCACCGGCGACAGCGACGC
GTGCATCAAGGGCAGCAACACGCACTCGCCGCTTCGGCATCGGCTGTAGA
GTACAGGATCGACCCATCGAAAGAGTCCGGCTCGGGGGGAGACTTCGAGG
TGGACTGCCTGCTGCTTGTGGAGCCCGGAGACTCCTGCTACCTCATGAGT
GGCGACCACAAGCACGATGGACTCACCCGCGTCCACGGGACGGCAGACAA
GCGCATCACCATCACCGGCGACAGCGACGCGTGCATCAAGGGCAGCAACA
CGCA
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