mRNA_H-canaliculatus_F_contig13605.2908.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female
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Overview
Homology
BLAST of mRNA_H-canaliculatus_F_contig13605.2908.1 vs. uniprot
Match: A0A6H5KRY8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRY8_9PHAE) HSP 1 Score: 219 bits (558), Expect = 1.420e-66 Identity = 119/177 (67.23%), Postives = 133/177 (75.14%), Query Frame = 1
Query: 4 APAAXXXXXXXXXAPAHYRLDLDRVAKLRAHQILRAHEEDMAGGGN------NSHHGPSEDGPLTLDDFMERWAASMPGVDTPSQDLLKGIALLEKKGGKDQNGKVAASSSVTYVPASGLPLAPAERLAALFRIKPKWPMGELEPYISEGDRKAGFLLKNTRFSTDPATGQKLFSAR 516
APAA APA+ RLDL +VA+LRAHQILRAHE +M GG S HG GP++L +FM++WAASMPGVDTPSQDLLKGIAL+E + D GK +S V+YVPASGLP +PAERLAALFRIKPKWPM ELEPYISE DRKAGFLLKNTR STDP TGQKLFS R
Sbjct: 302 APAAADSVADQTVAPAYLRLDLAKVARLRAHQILRAHEAEMNGGXXXXXXXXGSLHGSG--GPISLGEFMDQWAASMPGVDTPSQDLLKGIALVETR---DSKGKDKNASLVSYVPASGLPFSPAERLAALFRIKPKWPMAELEPYISEADRKAGFLLKNTRASTDPGTGQKLFSTR 473
BLAST of mRNA_H-canaliculatus_F_contig13605.2908.1 vs. uniprot
Match: B4FIU9_MAIZE (Zinc ion binding n=2 Tax=Zea mays TaxID=4577 RepID=B4FIU9_MAIZE) HSP 1 Score: 74.3 bits (181), Expect = 1.940e-12 Identity = 48/121 (39.67%), Postives = 65/121 (53.72%), Query Frame = 1
Query: 169 GPLTLDDFMERWAASMP-GVDTPSQDLLKGIALLEKKGGKDQNGKVAASSSVTYVPASGLPLAPAERLAALFRIKPKWPMGELEPYISE----GDRKAGFLLKNTRFSTDPATGQKLFSAR 516
G + L +FME+W S+P G+ P +L+G L EK G A + V + LPLAPAER AALFR + KW +L+PYI + G G L+K TR S A + +F+AR
Sbjct: 292 GKMKLSNFMEKWKRSIPSGMCCPDLQMLEGEVLCEKLG---------AETWVHAFSVTDLPLAPAERFAALFRERAKWEWKDLQPYIRDLHVPGASSEGLLIKYTRRSQPNAEAEPIFTAR 403
BLAST of mRNA_H-canaliculatus_F_contig13605.2908.1 vs. uniprot
Match: A0A3L6FR04_MAIZE (Sister chromatid cohesion protein DCC1 n=1 Tax=Zea mays TaxID=4577 RepID=A0A3L6FR04_MAIZE) HSP 1 Score: 74.3 bits (181), Expect = 2.470e-12 Identity = 48/121 (39.67%), Postives = 65/121 (53.72%), Query Frame = 1
Query: 169 GPLTLDDFMERWAASMP-GVDTPSQDLLKGIALLEKKGGKDQNGKVAASSSVTYVPASGLPLAPAERLAALFRIKPKWPMGELEPYISE----GDRKAGFLLKNTRFSTDPATGQKLFSAR 516
G + L +FME+W S+P G+ P +L+G L EK G A + V + LPLAPAER AALFR + KW +L+PYI + G G L+K TR S A + +F+AR
Sbjct: 632 GKMKLSNFMEKWKRSIPSGMCCPDLQMLEGEVLCEKLG---------AETWVHAFSVTDLPLAPAERFAALFRERAKWEWKDLQPYIRDLHVPGASSEGLLIKYTRRSQPNAEAEPIFTAR 743
BLAST of mRNA_H-canaliculatus_F_contig13605.2908.1 vs. uniprot
Match: J3M3G3_ORYBR (Uncharacterized protein n=2 Tax=Oryza brachyantha TaxID=4533 RepID=J3M3G3_ORYBR) HSP 1 Score: 72.0 bits (175), Expect = 8.600e-12 Identity = 43/120 (35.83%), Postives = 64/120 (53.33%), Query Frame = 1
Query: 169 GPLTLDDFMERWAASMPGVDTPSQDLLKGIALLEKKGGKDQNGKVAASSSVTYVPASGLPLAPAERLAALFRIKPKWPMGELEPYISE----GDRKAGFLLKNTRFSTDPATGQKLFSAR 516
G + L++FM++W S+P +L+G L EK + A + V S LPLAPA+R AALFR +P+W +L+PYI + G G L+K TR + A + +F+AR
Sbjct: 208 GKMKLENFMDKWVRSIPSGMHVDLQMLQGEVLCEK---------IGAETWVHTFSVSDLPLAPADRFAALFRERPRWEWKDLQPYIRDLRVPGVSSEGLLIKYTRRTQPSADAEPIFTAR 318
BLAST of mRNA_H-canaliculatus_F_contig13605.2908.1 vs. uniprot
Match: A0A7R9Y8B8_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9Y8B8_MICPS) HSP 1 Score: 67.8 bits (164), Expect = 2.050e-11 Identity = 47/117 (40.17%), Postives = 62/117 (52.99%), Query Frame = 1
Query: 181 LDDFMERWAASMPGV--DTPSQDLLKGIALLEKKGGKDQNGKVAASSSVTYVPASGLPLAPAERLAALFRIKPKWPMGELEPYISEGDRKAGF---LLKNTRFSTDPATGQKLFSAR 516
L DF+ERW S+P D LL+G+AL++K G D + ++ V A LP P ER ALF +KP+W M ELEPY+ G R+ LLK TR S A ++S R
Sbjct: 20 LRDFVERWRESVPEELRDVVDASLLRGLALVDKTAGVDGS----ENAFVRPFRADRLPKTPKERFHALFTLKPRWTMDELEPYVV-GTREMTVEAQLLKFTRVSQPTADAMPVYSKR 131
BLAST of mRNA_H-canaliculatus_F_contig13605.2908.1 vs. uniprot
Match: C5WT05_SORBI (Uncharacterized protein n=11 Tax=Panicoideae TaxID=147369 RepID=C5WT05_SORBI) HSP 1 Score: 70.5 bits (171), Expect = 4.320e-11 Identity = 44/120 (36.67%), Postives = 63/120 (52.50%), Query Frame = 1
Query: 169 GPLTLDDFMERWAASMPGVDTPSQDLLKGIALLEKKGGKDQNGKVAASSSVTYVPASGLPLAPAERLAALFRIKPKWPMGELEPYISE----GDRKAGFLLKNTRFSTDPATGQKLFSAR 516
G + L +FM++W S+P +L+G L EK G A + V + LPLAPA+R AALFR +PKW +L+PYI + G G L+K TR + A + +F+AR
Sbjct: 290 GKMKLANFMDKWERSIPSGMHADLQMLEGEVLCEKLG---------AETWVHAFSVADLPLAPADRFAALFRERPKWEWKDLQPYIRDLRLPGVSSEGLLIKYTRRTQPSAEAEPIFTAR 400
BLAST of mRNA_H-canaliculatus_F_contig13605.2908.1 vs. uniprot
Match: A0A0P0WH84_ORYSJ (Os05g0119600 protein n=11 Tax=Oryzinae TaxID=1648021 RepID=A0A0P0WH84_ORYSJ) HSP 1 Score: 69.3 bits (168), Expect = 1.110e-10 Identity = 43/120 (35.83%), Postives = 63/120 (52.50%), Query Frame = 1
Query: 169 GPLTLDDFMERWAASMPGVDTPSQDLLKGIALLEKKGGKDQNGKVAASSSVTYVPASGLPLAPAERLAALFRIKPKWPMGELEPYISE----GDRKAGFLLKNTRFSTDPATGQKLFSAR 516
G + L++FM +W S+P +L+G L EK G A + V + LPLAPA+R AALF+ +PKW +L+PYI + G G L+K TR + A + +F+AR
Sbjct: 297 GKMKLENFMGKWERSIPSGMRADLQMLEGEVLCEKLG---------AETWVHAFSVADLPLAPADRFAALFQERPKWEWKDLQPYIRDLRVPGVSSEGLLIKYTRKTQPSADAEPIFTAR 407
BLAST of mRNA_H-canaliculatus_F_contig13605.2908.1 vs. uniprot
Match: C1N731_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1N731_MICPC) HSP 1 Score: 67.4 bits (163), Expect = 5.750e-10 Identity = 47/117 (40.17%), Postives = 62/117 (52.99%), Query Frame = 1
Query: 181 LDDFMERWAASMPGV--DTPSQDLLKGIALLEKKGGKDQNGKVAASSSVTYVPASGLPLAPAERLAALFRIKPKWPMGELEPYISEGDRKAGF---LLKNTRFSTDPATGQKLFSAR 516
L DF+ERW S+P D LL+G+AL++K G D + ++ V A LP P ER ALF +KP+W M ELEPY+ G R+ LLK TR S A ++S R
Sbjct: 403 LRDFVERWRESVPEELRDVVDASLLRGLALVDKTAGVDGS----ENAFVRPFRADRLPKTPKERFHALFTLKPRWTMDELEPYVV-GTREMTVEAQLLKFTRVSQPTADATPVYSKR 514
BLAST of mRNA_H-canaliculatus_F_contig13605.2908.1 vs. uniprot
Match: I0Z8H1_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z8H1_COCSC) HSP 1 Score: 58.9 bits (141), Expect = 1.970e-8 Identity = 36/95 (37.89%), Postives = 55/95 (57.89%), Query Frame = 1
Query: 244 LLKGIALLEKKGGKDQNGKVAASSSVTYVPASGLPLAPAERLAALFRIKPKWPMGELEPYISE---GDRKAGFLLKN-TRFSTDPATGQKLFSAR 516
+L+G AL E+ GG+D + ++PA+ +P PA R AALF +KP+W + +LEPY+++ R A FLL R S D + ++SAR
Sbjct: 7 MLRGEALREEIGGEDM---------LRHLPAAAMPTDPAARFAALFAVKPRWELPDLEPYLADLQVPGRSAEFLLLTYARASQDSPSAPLVYSAR 92
BLAST of mRNA_H-canaliculatus_F_contig13605.2908.1 vs. uniprot
Match: C1EF92_MICCC (Uncharacterized protein n=2 Tax=Micromonas TaxID=38832 RepID=C1EF92_MICCC) HSP 1 Score: 61.6 bits (148), Expect = 5.620e-8 Identity = 46/163 (28.22%), Postives = 76/163 (46.63%), Query Frame = 1
Query: 43 APAHYRLDLDRVAKLRAHQILRAHEEDMAGGGNNSHHGPSEDGPLTLDDFMERWAASMPGV--DTPSQDLLKGIALLEK-KGGKDQNGKVAASSSVTYVPASGLPLAPAERLAALFRIKPKWPMGELEPYIS--EGDRKAGFLLKNTRFSTDPATGQKLFSAR 516
+P +++D +V + +A ++L + AG L L +F+ W+ ++DLLKG+AL+EK G+D++ V V LP P +R A+F +KP+W M EL+ Y++ + LLK TR S A ++S R
Sbjct: 345 SPCVWKIDAKKVCRAKASRMLEGSKAAAAGR-------------LRLGEFLADWSGRCDEELRSACTRDLLKGLALIEKGASGRDEDALVRVFRDVD------LPKNPRDRFRAIFALKPRWQMDELDAYVAATSDETVEAQLLKYTRVSQPTADAVPIYSKR 488 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig13605.2908.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_F_contig13605.2908.1 >prot_H-canaliculatus_F_contig13605.2908.1 ID=prot_H-canaliculatus_F_contig13605.2908.1|Name=mRNA_H-canaliculatus_F_contig13605.2908.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=173bp TAPAAAAAAAASAGAPAHYRLDLDRVAKLRAHQILRAHEEDMAGGGNNSHback to top mRNA from alignment at H-canaliculatus_F_contig13605:139..1773+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_F_contig13605.2908.1 ID=mRNA_H-canaliculatus_F_contig13605.2908.1|Name=mRNA_H-canaliculatus_F_contig13605.2908.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=1635bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13605:139..1773+ (Hapterophycus canaliculatus Oshoro5f female)back to top Coding sequence (CDS) from alignment at H-canaliculatus_F_contig13605:139..1773+ >mRNA_H-canaliculatus_F_contig13605.2908.1 ID=mRNA_H-canaliculatus_F_contig13605.2908.1|Name=mRNA_H-canaliculatus_F_contig13605.2908.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=1038bp|location=Sequence derived from alignment at H-canaliculatus_F_contig13605:139..1773+ (Hapterophycus canaliculatus Oshoro5f female)back to top |