mRNA_H-canaliculatus_F_contig1360.2902.1 (mRNA) Hapterophycus canaliculatus Oshoro5f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_F_contig1360.2902.1
Unique NamemRNA_H-canaliculatus_F_contig1360.2902.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro5f female (Hapterophycus canaliculatus Oshoro5f female)
Homology
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BLAST of mRNA_H-canaliculatus_F_contig1360.2902.1 vs. uniprot
Match: A0A6H5JRN5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JRN5_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 2.820e-25
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:   22 QVGWKLRVSILTDAARALEFLHRKSLIHRDIKSPNFLLDSQHRCKIADFGMARQL 186
            QVGWKLRVSIL DAARAL+FLHRKSLIHRDIKSPN LLDS+HRCK+ADFGMARQL
Sbjct:  137 QVGWKLRVSILMDAARALDFLHRKSLIHRDIKSPNILLDSRHRCKLADFGMARQL 191
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BLAST of mRNA_H-canaliculatus_F_contig1360.2902.1 vs. uniprot
Match: A0A835ZKA0_9STRA (LISK family protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKA0_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.520e-20
Identity = 44/54 (81.48%), Postives = 47/54 (87.04%), Query Frame = 1 
Query:   25 VGWKLRVSILTDAARALEFLHRKSLIHRDIKSPNFLLDSQHRCKIADFGMARQL 186
            +GWKLRVS+L DAARALEFLH KSLIHRDIKSPN LLD    CKIADFGMARQ+
Sbjct:  142 LGWKLRVSMLLDAARALEFLHSKSLIHRDIKSPNMLLDLNFNCKIADFGMARQI 195
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BLAST of mRNA_H-canaliculatus_F_contig1360.2902.1 vs. uniprot
Match: A0A835YUS4_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUS4_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.380e-14
Identity = 31/55 (56.36%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   22 QVGWKLRVSILTDAARALEFLHRKSLIHRDIKSPNFLLDSQHRCKIADFGMARQL 186
            ++GWK R+ +  +   ALE+LH + LIHRDIKS NFLLD+  RCK++DFGMAR++
Sbjct:  199 ELGWKFRIRVAKEGLEALEYLHSQELIHRDIKSSNFLLDADWRCKLSDFGMAREV 253
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BLAST of mRNA_H-canaliculatus_F_contig1360.2902.1 vs. uniprot
Match: A0A836CNH5_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNH5_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.290e-14
Identity = 37/59 (62.71%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   25 VGWKLRVSILTDAARALEFLHRKSLIHRDIKSPNFLLDSQHRCKIAD-----FGMARQL 186
            +GW+LR SIL DA RALE+LH K LIHRDIKS N LLD    CK+A      FGMAR L
Sbjct:  113 IGWRLRASILLDATRALEYLHGKRLIHRDIKSANLLLDRNFNCKLAGEFVSYFGMARPL 171
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BLAST of mRNA_H-canaliculatus_F_contig1360.2902.1 vs. uniprot
Match: A0A6H5L3U3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3U3_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 4.690e-14
Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:   25 VGWKLRVSILTDAARALEFLHRKSLIHRDIKSPNFLLDSQHRCKIADFGMARQL 186
            +GW+ R+ I  + A ALE+LH + LIHRDIKS NFLLD    CK++DFGMAR++
Sbjct:   51 LGWRFRIQIAKEGAEALEYLHSQQLIHRDIKSSNFLLDGDWHCKLSDFGMAREV 104
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BLAST of mRNA_H-canaliculatus_F_contig1360.2902.1 vs. uniprot
Match: D7G911_ECTSI (LISK family protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G911_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 4.790e-14
Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:   25 VGWKLRVSILTDAARALEFLHRKSLIHRDIKSPNFLLDSQHRCKIADFGMARQL 186
            +GW+ R+ I  + A ALE+LH + LIHRDIKS NFLLD    CK++DFGMAR++
Sbjct:  122 LGWRFRIQIAKEGAEALEYLHSQQLIHRDIKSSNFLLDGDWHCKLSDFGMAREV 175
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BLAST of mRNA_H-canaliculatus_F_contig1360.2902.1 vs. uniprot
Match: A0A0W8BMG5_PHYNI (Serine/threonine-protein kinase drkD n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8BMG5_PHYNI)

HSP 1 Score: 70.5 bits (171), Expect = 1.080e-12
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:   16 FDQVGWKLRVSILTDAARALEFLHRKSLIHRDIKSPNFLLDSQHRCKIADFGMARQL 186
            F+ + WK +V ++ DAAR +++LH K +IHRDIKS NFL+D   R K+ADFG+++ L
Sbjct:  449 FETIPWKFKVRMMLDAARGIQYLHSKRIIHRDIKSHNFLVDDDWRVKVADFGISKVL 505
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BLAST of mRNA_H-canaliculatus_F_contig1360.2902.1 vs. uniprot
Match: D0N3C7_PHYIT (Protein kinase, putative n=20 Tax=Peronosporaceae TaxID=4777 RepID=D0N3C7_PHYIT)

HSP 1 Score: 70.5 bits (171), Expect = 1.090e-12
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:   16 FDQVGWKLRVSILTDAARALEFLHRKSLIHRDIKSPNFLLDSQHRCKIADFGMARQL 186
            F+ + WK +V ++ DAAR +++LH K +IHRDIKS NFL+D   R K+ADFG+++ L
Sbjct:  682 FETIPWKFKVRMMLDAARGIQYLHSKRIIHRDIKSHNFLVDDDWRVKVADFGISKVL 738
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BLAST of mRNA_H-canaliculatus_F_contig1360.2902.1 vs. uniprot
Match: K3WK92_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WK92_GLOUD)

HSP 1 Score: 70.5 bits (171), Expect = 1.090e-12
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:   16 FDQVGWKLRVSILTDAARALEFLHRKSLIHRDIKSPNFLLDSQHRCKIADFGMARQL 186
            F+ + WK +V ++ DAAR +++LH K +IHRDIKS NFL+D   R K+ADFG+++ L
Sbjct:  690 FETIPWKFKVRMMLDAARGIQYLHSKRIIHRDIKSHNFLVDDDWRVKVADFGISKVL 746
[Close]
BLAST of mRNA_H-canaliculatus_F_contig1360.2902.1 vs. uniprot
Match: A0A8J5JAK7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JAK7_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.100e-12
Identity = 29/57 (50.88%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:   16 FDQVGWKLRVSILTDAARALEFLHRKSLIHRDIKSPNFLLDSQHRCKIADFGMARQL 186
            F+ + WK +V ++ DAAR +++LH K +IHRDIKS NFL+D   R K+ADFG+++ L
Sbjct:  525 FETIPWKFKVRMMLDAARGIQYLHSKRIIHRDIKSHNFLVDDDWRVKVADFGISKVL 581
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_F_contig1360.2902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JRN5_9PHAE2.820e-2590.91Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZKA0_9STRA1.520e-2081.48LISK family protein kinase n=1 Tax=Tribonema minus... [more]
A0A835YUS4_9STRA1.380e-1456.36Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A836CNH5_9STRA2.290e-1462.71Kinase-like domain-containing protein (Fragment) n... [more]
A0A6H5L3U3_9PHAE4.690e-1457.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G911_ECTSI4.790e-1457.41LISK family protein kinase n=1 Tax=Ectocarpus sili... [more]
A0A0W8BMG5_PHYNI1.080e-1250.88Serine/threonine-protein kinase drkD n=1 Tax=Phyto... [more]
D0N3C7_PHYIT1.090e-1250.88Protein kinase, putative n=20 Tax=Peronosporaceae ... [more]
K3WK92_GLOUD1.090e-1250.88Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8J5JAK7_9STRA1.100e-1250.88Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_F_contig1360contigH-canaliculatus_F_contig1360:179..364 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro5f female vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro5f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue1.7e-11
Seed eggNOG ortholog2880.D7G911
KEGG koko:K04427,ko:K20717,ko:K20718
KEGG Pathwayko04010,ko04013,ko04016,ko04064,ko04140,ko04152,ko04214,ko04310,ko04380,ko04520,ko04620,ko04621,ko04622,ko04624,ko04657,ko04660,ko04668,ko05140,ko05145,ko05162,ko05168,ko05169,ko05418,map04010,map04013,map04016,map04064,map04140,map04152,map04214,map04310,map04380,map04520,map04620,map04621,map04622,map04624,map04657,map04660,map04668,map05140,map05145,map05162,map05168,map05169,map05418
KEGG ModuleM00686,M00688,M00689
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
EC2.7.11.1,2.7.11.25
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRasGEF domain-containing protein
Ec32 orthologEc-11_002800.1
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929102.5580935-CDS-H-canaliculatus_F_contig1360:178..3641622929102.5580935-CDS-H-canaliculatus_F_contig1360:178..364Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1360 179..364 -
1696845679.621367-CDS-H-canaliculatus_F_contig1360:178..3641696845679.621367-CDS-H-canaliculatus_F_contig1360:178..364Hapterophycus canaliculatus Oshoro5f femaleCDSH-canaliculatus_F_contig1360 179..364 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_F_contig1360.2902.1prot_H-canaliculatus_F_contig1360.2902.1Hapterophycus canaliculatus Oshoro5f femalepolypeptideH-canaliculatus_F_contig1360 179..364 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_F_contig1360.2902.1

>prot_H-canaliculatus_F_contig1360.2902.1 ID=prot_H-canaliculatus_F_contig1360.2902.1|Name=mRNA_H-canaliculatus_F_contig1360.2902.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=polypeptide|length=62bp
FLESPFDQVGWKLRVSILTDAARALEFLHRKSLIHRDIKSPNFLLDSQHR
CKIADFGMARQL
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mRNA from alignment at H-canaliculatus_F_contig1360:179..364-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_F_contig1360.2902.1 ID=mRNA_H-canaliculatus_F_contig1360.2902.1|Name=mRNA_H-canaliculatus_F_contig1360.2902.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=mRNA|length=186bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1360:179..364- (Hapterophycus canaliculatus Oshoro5f female)
TTTCTCGAATCGCCGTTCGACCAGGTGGGATGGAAGCTGCGCGTGTCCAT
CCTGACAGATGCGGCGCGCGCCCTGGAGTTCCTCCACCGCAAGAGCCTCA
TCCACCGGGACATCAAGAGCCCCAACTTCCTGCTGGACTCGCAGCACCGC
TGCAAGATCGCCGACTTCGGCATGGCGAGGCAGCTC
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Coding sequence (CDS) from alignment at H-canaliculatus_F_contig1360:179..364-

>mRNA_H-canaliculatus_F_contig1360.2902.1 ID=mRNA_H-canaliculatus_F_contig1360.2902.1|Name=mRNA_H-canaliculatus_F_contig1360.2902.1|organism=Hapterophycus canaliculatus Oshoro5f female|type=CDS|length=372bp|location=Sequence derived from alignment at H-canaliculatus_F_contig1360:179..364- (Hapterophycus canaliculatus Oshoro5f female)
TTTCTCGAATCGCCGTTCGACCAGGTGGGATGGAAGCTGCGCGTGTCCAT
CCTGACAGATGCGGCGCGCGCCCTGGAGTTCCTCCACCGCAAGAGCCTCA
TCCACCGGGACATCAAGAGCCCCAACTTCCTGCTGGACTCGCAGCACCGC
TGCAAGATCGCCGACTTCGGCATGGCGAGGCAGCTCTTTCTCGAATCGCC
GTTCGACCAGGTGGGATGGAAGCTGCGCGTGTCCATCCTGACAGATGCGG
CGCGCGCCCTGGAGTTCCTCCACCGCAAGAGCCTCATCCACCGGGACATC
AAGAGCCCCAACTTCCTGCTGGACTCGCAGCACCGCTGCAAGATCGCCGA
CTTCGGCATGGCGAGGCAGCTC
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